Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0006580

Physical Location & Seq

Genomic Coordinates Forward (+)

22156626 .. 22161189

Gene Structure 4564 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G220900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1323 bp

ATGGAGCCTCTATGTGAGTTTTGTGGGGTGGTAAGGGCAGTTGTCTACTGTAAATCGGACCTGGCTCGCCTTTGCTTGCACTGTGATGGTTGCGTGCACTCAGCGAACATTTTGTCACGCAGGCATCCTCGCTCACTTCTATGTGACAAGTGTAATGCTCAGCCTGCAATGGTCCGATGCATGGATGAGAAGTTGTCCTTATGTCAAAGCTGTGATCAATGGAATCATAACAATGGAGATACAACAACAGGGATGGTAGGGCATAGGACACATGCATTAACTTGTTACACGGGTTGCCCTTCTTTGTCTGAGTTTTCGAGAATTTGGTCTTCGGTTCTTGATGGATCTTCTTCAAGTGGTTTTGAGACTAATGGTGGTGGTGGTGGTGGCGGCGGAAATAATAATTGGGATCAGTCACTTGGATCAGCTCAAGTGCCAATAAATGATCAGACTAATTGCATTGGTAATGCTTTGGAACGTAGAGATAATAGTGAGAGATCATTTGGGGTTGTGACTAGCAAGTTGAGTGGATCACTAGATCAGTCTTCTTGTGCCAAGTTTGAGCCCTGGATGGCCAGATCTACTGTAATTTCAGCGAATCCGAATGGCATCCCTCAAGGTAATAAAGATCAAGCACCTTTCTTGCCACAGGAATCTAGCCTGTCAAAGGATAGCAATGATCTATGTGATGGCCTCAACATTGATGATGTTCCGTTGAACTTTGAAAATGCTGAAGGGATATTTAGCTGTCCACAAGGTCCTTCCAGATACCAGTTTGAGGATGGAGAAATGGATTGCCTATTGATGGAGAAAAACTTATCAGTTACAGAGTCTAATGGTCCTAATGACAATGCTGTACAGGCATCATCTTCAGGACCACAAGACTGCGTGGCTTTTCAATCCTCTTGTGGATCAGATAATGTGATGCCTGCCATGAACGGTAGTGCAAACTGCTTACTCATGAATCCTACTTGCAGCAGAAACATCAATCTGGGATTTCCTACCGGGCAAGTTCATTCGAGCATGTCGCTTTCGCTGTCCAGCATGAGCAGGGAAAGCAATCCTGATTATCAAGATTGTGGTTTGTCGCCCATATTTCTAACCGGAGAGCCTTGGGACTCAGCTATGGAGGCTAGCAGTCCACAAGCAAGGGACAAGGCAAAGATGAGATACAAGGAAAAAAAGAAAACTCGCATGTTTGGTAAACAAATAAGATATGCCTCTAGGAAGGCCAGAGCTGATACTAGAAAACGCGTCAAGGGGAGATTTGTAAAAGCTGGTGAAGAATATGACTATGATCCCCTAGTGACGAGGAACTTCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022603 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0060688 GO:0065007 GO:0080090 GO:0140110 GO:1900618 GO:1903506 GO:1905428 GO:2000026 GO:2000028 GO:2000032 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

441

Amino Acids

47.88

Weight (kDa)

5.74

Isoelectric Point (pI)

55.1

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21880 AT3G21880 AT3G21880 AT4G15250
fragaria_vesca	FvH4_6g43570
malus_domestica	MD09G1104700.v1.1
prunus_persica	Prupe.3G220900_v2.0.a1
pyrus_communis	pycom09g02770 pycom17g08960 pycom17g08970 pycom17g08990
rosa_chinensis	RchiOBHm_Chr2g0160151
rosa_laevigata	RLG00000021200
rosa_multiflora	Rmu_sc0000403.1_g000012
rosa_roxburghii	Rroxscaffold_2G00090010
rosa_rugosa	Rorug02G0481400.1 Rorug02G0481500.1 Rorug02G0481600 Rorug02G0481700 Rorug02G0481800 Rorug02G0481900
rosa_samantha	Rh2AG547400 Rh2BG560600 Rh2CG531000 Rh2DG569300
rosa_wichuraiana	Rw2G045260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	45
AccII	CGCG	1 cut(s)	1254
AciI	CCGC	2 cut(s)	390, 393
AclWI	GGATC	6 cut(s)	352, 417, 430, 538, 919, 1292
AcoI	YGGCCR	1 cut(s)	573
AcsI	RAATTY	1 cut(s)	321
AcuI	CTGAAG	2 cut(s)	753, 855
AfaI	GTAC	1 cut(s)	858
AfiI	CCNNNNNNNGG	4 cut(s)	181, 667, 778, 805
AflIII	ACRYGT	1 cut(s)	1252
AgsI	TTSAA	4 cut(s)	354, 718, 725, 899
AjnI	CCWGG	2 cut(s)	60, 566
AjuI	GAANNNNNNNTTGG	2 cut(s)	388, 420
AluBI	AGCT	6 cut(s)	210, 428, 747, 1124, 1238, 1277
AluI	AGCT	6 cut(s)	210, 428, 747, 1124, 1238, 1277
Alw21I	GWGCWC	1 cut(s)	99
Alw26I	GTCTC	1 cut(s)	359
Alw44I	GTGCAC	1 cut(s)	95
AlwI	GGATC	6 cut(s)	352, 417, 430, 538, 919, 1292
AoxI	GGCC	3 cut(s)	573, 691, 1230
ApaLI	GTGCAC	1 cut(s)	95
ApeKI	GCWGC	1 cut(s)	975
ApoI	RAATTY	1 cut(s)	321
ArsI	GACNNNNNNTTYG	2 cut(s)	98, 130
AspS9I	GGNCC	5 cut(s)	58, 172, 758, 839, 875
AsuC2I	CCSGG	1 cut(s)	1006
AsuHPI	GGTGA	1 cut(s)	1292
AsuNHI	GCTAGC	1 cut(s)	1133
AvaII	GGWCC	5 cut(s)	58, 172, 758, 839, 875
BaeGI	GKGCMC	1 cut(s)	99
BalI	TGGCCA	1 cut(s)	575
BanII	GRGCYC	1 cut(s)	567
BbsI	GAAGAC	2 cut(s)	321, 537
Bbv12I	GWGCWC	1 cut(s)	99
BbvI	GCAGC	1 cut(s)	987
BccI	CCATC	7 cut(s)	80, 247, 335, 565, 683, 776, 799
BciT130I	CCWGG	2 cut(s)	62, 568
BclI	TGATCA	2 cut(s)	214, 445
BcnI	CCSGG	1 cut(s)	1006
BcoDI	GTCTC	1 cut(s)	359
BfaI	CTAG	7 cut(s)	516, 536, 657, 1134, 1224, 1245, 1304
BglII	AGATCT	1 cut(s)	578
BisI	GCNGC	2 cut(s)	391, 976
BlpI	GCTNAGC	1 cut(s)	159
BlsI	GCNGC	2 cut(s)	392, 977
Bme1390I	CCNGG	3 cut(s)	62, 568, 1006
Bme18I	GGWCC	5 cut(s)	58, 172, 758, 839, 875
BmgT120I	GGNCC	5 cut(s)	58, 172, 758, 839, 875
BmiI	GGNNCC	1 cut(s)	6
BmrFI	CCNGG	3 cut(s)	62, 568, 1006
BmsI	GCATC	5 cut(s)	133, 167, 618, 872, 915
BmtI	GCTAGC	1 cut(s)	1137
BpiI	GAAGAC	2 cut(s)	321, 537
Bpu1102I	GCTNAGC	1 cut(s)	159
BpuEI	CTTGAG	2 cut(s)	414, 600
BpuMI	CCSGG	1 cut(s)	1006
BsaJI	CCNNGG	2 cut(s)	566, 1112
BsaWI	WCCGGW	1 cut(s)	1103
Bsc4I	CCNNNNNNNGG	4 cut(s)	181, 667, 778, 805
Bse1I	ACTGG	1 cut(s)	772
Bse3DI	GCAATG	2 cut(s)	174, 682
BseBI	CCWGG	2 cut(s)	62, 568
BseDI	CCNNGG	2 cut(s)	566, 1112
BseGI	GGATG	6 cut(s)	124, 190, 258, 576, 609, 787
BseLI	CCNNNNNNNGG	4 cut(s)	181, 667, 778, 805
BseMI	GCAATG	2 cut(s)	174, 682
BseMII	CTCAG	4 cut(s)	114, 173, 300, 1134
BseNI	ACTGG	1 cut(s)	772
BseSI	GKGCMC	1 cut(s)	99
BseXI	GCAGC	1 cut(s)	987
Bsh1236I	CGCG	1 cut(s)	1254
BshFI	GGCC	3 cut(s)	575, 693, 1232
BsiHKAI	GWGCWC	1 cut(s)	99
BsiSI	CCGG	2 cut(s)	1005, 1104
BslFI	GGGAC	2 cut(s)	1130, 1166
BslI	CCNNNNNNNGG	4 cut(s)	181, 667, 778, 805
BsmAI	GTCTC	1 cut(s)	359
BsmFI	GGGAC	2 cut(s)	1130, 1166
BsnI	GGCC	3 cut(s)	575, 693, 1232
Bsp1286I	GDGCHC	2 cut(s)	99, 567
Bsp1407I	TGTACA	1 cut(s)	856
Bsp1720I	GCTNAGC	1 cut(s)	159
BspACI	CCGC	2 cut(s)	390, 393
BspANI	GGCC	3 cut(s)	575, 693, 1232
BspCNI	CTCAG	4 cut(s)	113, 172, 301, 1133
BspFNI	CGCG	1 cut(s)	1254
BspHI	TCATGA	1 cut(s)	960
BspLI	GGNNCC	1 cut(s)	6
BspOI	GCTAGC	1 cut(s)	1137
BspPI	GGATC	6 cut(s)	352, 417, 430, 538, 919, 1292
BsrDI	GCAATG	2 cut(s)	174, 682
BsrGI	TGTACA	1 cut(s)	856
BsrI	ACTGG	1 cut(s)	772
BssECI	CCNNGG	2 cut(s)	566, 1112
BssT1I	CCWWGG	1 cut(s)	1112
Bst2UI	CCWGG	2 cut(s)	62, 568
Bst4CI	ACNGT	4 cut(s)	50, 83, 586, 941
BstAUI	TGTACA	1 cut(s)	856
BstC8I	GCNNGC	7 cut(s)	67, 77, 95, 122, 165, 930, 1135
BstDEI	CTNAG	4 cut(s)	100, 159, 309, 1120
BstENI	CCTNNNNNAGG	1 cut(s)	665
BstF5I	GGATG	6 cut(s)	124, 190, 258, 576, 609, 787
BstFNI	CGCG	1 cut(s)	1254
BstMAI	GTCTC	1 cut(s)	359
BstMWI	GCNNNNNNNGC	4 cut(s)	164, 860, 1056, 1130
BstNI	CCWGG	2 cut(s)	62, 568
BstNSI	RCATGY	3 cut(s)	275, 1027, 1198
BstSCI	CCNGG	3 cut(s)	60, 566, 1004
BstSLI	GKGCMC	1 cut(s)	99
BstUI	CGCG	1 cut(s)	1254
BstV1I	GCAGC	1 cut(s)	987
BstV2I	GAAGAC	2 cut(s)	321, 537
BstX2I	RGATCY	2 cut(s)	344, 578
BstYI	RGATCY	2 cut(s)	344, 578
BsuRI	GGCC	3 cut(s)	575, 693, 1232
BtsCI	GGATG	6 cut(s)	124, 190, 258, 576, 609, 787
BtsIMutI	CAGTG	1 cut(s)	79
Cac8I	GCNNGC	7 cut(s)	67, 77, 95, 122, 165, 930, 1135
CciI	TCATGA	1 cut(s)	960
Cfr13I	GGNCC	5 cut(s)	58, 172, 758, 839, 875
CseI	GACGC	1 cut(s)	1243
Csp6I	GTAC	1 cut(s)	857
CspCI	CAANNNNNGTGG	2 cut(s)	508, 543
CviAII	CATG	7 cut(s)	181, 272, 934, 961, 1024, 1045, 1195
CviQI	GTAC	1 cut(s)	857
DdeI	CTNAG	4 cut(s)	100, 159, 309, 1120
EaeI	YGGCCR	1 cut(s)	573
EciI	GGCGGA	1 cut(s)	408
Eco130I	CCWWGG	1 cut(s)	1112
Eco24I	GRGCYC	1 cut(s)	567
Eco47I	GGWCC	5 cut(s)	58, 172, 758, 839, 875
Eco57I	CTGAAG	2 cut(s)	753, 855
EcoNI	CCTNNNNNAGG	1 cut(s)	665
EcoO109I	RGGNCCY	1 cut(s)	758
EcoRII	CCWGG	2 cut(s)	60, 566
EcoT14I	CCWWGG	1 cut(s)	1112
EcoT22I	ATGCAT	2 cut(s)	182, 277
EcoT38I	GRGCYC	1 cut(s)	567
ErhI	CCWWGG	1 cut(s)	1112
FaeI	CATG	7 cut(s)	184, 275, 937, 964, 1027, 1048, 1198
FalI	AAGNNNNNCTT	2 cut(s)	182, 214
FaqI	GGGAC	2 cut(s)	1130, 1166
FatI	CATG	7 cut(s)	180, 271, 933, 960, 1023, 1044, 1194
FbaI	TGATCA	2 cut(s)	214, 445
FblI	GTMKAC	1 cut(s)	45
Fnu4HI	GCNGC	2 cut(s)	391, 976
FokI	GGATG	6 cut(s)	111, 197, 265, 583, 596, 794
FriOI	GRGCYC	1 cut(s)	567
Fsp4HI	GCNGC	2 cut(s)	391, 976
FspBI	CTAG	7 cut(s)	516, 536, 657, 1134, 1224, 1245, 1304
GluI	GCNGC	2 cut(s)	391, 976
HaeIII	GGCC	3 cut(s)	575, 693, 1232
HapII	CCGG	2 cut(s)	1005, 1104
HgaI	GACGC	1 cut(s)	1243
Hin1II	CATG	7 cut(s)	184, 275, 937, 964, 1027, 1048, 1198
HinfI	GANTC	6 cut(s)	223, 598, 653, 830, 964, 1118
HpaII	CCGG	2 cut(s)	1005, 1104
HphI	GGTGA	1 cut(s)	1292
Hpy166II	GTNNAC	5 cut(s)	46, 97, 752, 1142, 1205
Hpy188I	TCNGA	7 cut(s)	58, 176, 310, 450, 603, 916, 1322
Hpy188III	TCNNGA	7 cut(s)	318, 338, 765, 873, 961, 1064, 1073
Hpy8I	GTNNAC	5 cut(s)	46, 97, 752, 1142, 1205
HpyAV	CCTTC	4 cut(s)	309, 728, 771, 1222
HpyCH4III	ACNGT	4 cut(s)	50, 83, 586, 941
HpyCH4IV	ACGT	1 cut(s)	478
HpyCH4V	TGCA	8 cut(s)	79, 97, 167, 180, 275, 459, 947, 975
HpyF10VI	GCNNNNNNNGC	4 cut(s)	164, 860, 1056, 1130
HpyF3I	CTNAG	4 cut(s)	100, 159, 309, 1120
HpySE526I	ACGT	1 cut(s)	478
Hsp92II	CATG	7 cut(s)	184, 275, 937, 964, 1027, 1048, 1198
Ksp22I	TGATCA	2 cut(s)	214, 445
LmnI	GCTCC	1 cut(s)	4
Lsp1109I	GCAGC	1 cut(s)	987
LweI	GCATC	5 cut(s)	133, 167, 618, 872, 915
MaeI	CTAG	7 cut(s)	516, 536, 657, 1134, 1224, 1245, 1304
MaeII	ACGT	1 cut(s)	478
MaeIII	GTNAC	7 cut(s)	114, 143, 284, 414, 511, 823, 1306
MboII	GAAGA	6 cut(s)	321, 339, 342, 537, 861, 1295
MflI	RGATCY	2 cut(s)	344, 578
MhlI	GDGCHC	2 cut(s)	99, 567
MlsI	TGGCCA	1 cut(s)	575
MluCI	AATT	4 cut(s)	321, 403, 454, 588
MluI	ACGCGT	1 cut(s)	1252
MluNI	TGGCCA	1 cut(s)	575
MlyI	GAGTC	2 cut(s)	839, 1112
MnlI	CCTC	9 cut(s)	18, 138, 624, 704, 772, 913, 1123, 1231, 1305
Mox20I	TGGCCA	1 cut(s)	575
Mph1103I	ATGCAT	2 cut(s)	182, 277
MscI	TGGCCA	1 cut(s)	575
MseI	TTAA	1 cut(s)	278
MslI	CAYNNNNRTG	3 cut(s)	84, 139, 231
Msp20I	TGGCCA	1 cut(s)	575
MspI	CCGG	2 cut(s)	1005, 1104
MspR9I	CCNGG	3 cut(s)	62, 568, 1006
MvaI	CCWGG	2 cut(s)	62, 568
MvnI	CGCG	1 cut(s)	1254
MwoI	GCNNNNNNNGC	4 cut(s)	164, 860, 1056, 1130
NciI	CCSGG	1 cut(s)	1006
NheI	GCTAGC	1 cut(s)	1133
NlaIII	CATG	7 cut(s)	184, 275, 937, 964, 1027, 1048, 1198
NlaIV	GGNNCC	1 cut(s)	6
NmuCI	GTSAC	5 cut(s)	114, 143, 414, 511, 1306
NsiI	ATGCAT	2 cut(s)	182, 277
NspI	RCATGY	3 cut(s)	275, 1027, 1198
PagI	TCATGA	1 cut(s)	960
PfeI	GAWTC	4 cut(s)	223, 598, 653, 964
PkrI	GCNGC	2 cut(s)	392, 977
PleI	GAGTC	2 cut(s)	838, 1112
PpsI	GAGTC	2 cut(s)	838, 1112
PpuMI	RGGWCCY	1 cut(s)	758
Psp5II	RGGWCCY	1 cut(s)	758
Psp6I	CCWGG	2 cut(s)	60, 566
PspGI	CCWGG	2 cut(s)	60, 566
PspN4I	GGNNCC	1 cut(s)	6
PspPI	GGNCC	5 cut(s)	58, 172, 758, 839, 875
PspPPI	RGGWCCY	1 cut(s)	758
PsuI	RGATCY	2 cut(s)	344, 578
RsaI	GTAC	1 cut(s)	858
RsaNI	GTAC	1 cut(s)	857
RseI	CAYNNNNRTG	3 cut(s)	84, 139, 231
SaqAI	TTAA	1 cut(s)	278
SatI	GCNGC	2 cut(s)	391, 976
Sau96I	GGNCC	5 cut(s)	58, 172, 758, 839, 875
SchI	GAGTC	2 cut(s)	839, 1112
ScrFI	CCNGG	3 cut(s)	62, 568, 1006
SduI	GDGCHC	2 cut(s)	99, 567
SfaNI	GCATC	5 cut(s)	133, 167, 618, 872, 915
SinI	GGWCC	5 cut(s)	58, 172, 758, 839, 875
SmiMI	CAYNNNNRTG	3 cut(s)	84, 139, 231
SmlI	CTYRAG	2 cut(s)	429, 615
SmoI	CTYRAG	2 cut(s)	429, 615
Sse9I	AATT	4 cut(s)	321, 403, 454, 588
SsiI	CCGC	2 cut(s)	390, 393
SspMI	CTAG	7 cut(s)	516, 536, 657, 1134, 1224, 1245, 1304
StyD4I	CCNGG	3 cut(s)	60, 566, 1004
StyI	CCWWGG	1 cut(s)	1112
TaaI	ACNGT	4 cut(s)	50, 83, 586, 941
TaiI	ACGT	1 cut(s)	481
TaqI	TCGA	2 cut(s)	317, 1019
TasI	AATT	4 cut(s)	321, 403, 454, 588
TatI	WGTACW	1 cut(s)	856
TauI	GCSGC	1 cut(s)	393
TfiI	GAWTC	4 cut(s)	223, 598, 653, 964
Tru1I	TTAA	1 cut(s)	278
Tru9I	TTAA	1 cut(s)	278
TscAI	CASTG	1 cut(s)	86
TseFI	GTSAC	5 cut(s)	114, 143, 414, 511, 1306
TseI	GCWGC	1 cut(s)	975
Tsp45I	GTSAC	5 cut(s)	114, 143, 414, 511, 1306
TspDTI	ATGAA	3 cut(s)	950, 977, 1004
TspGWI	ACGGA	1 cut(s)	702
TspRI	CASTG	1 cut(s)	86
VneI	GTGCAC	1 cut(s)	95
VpaK11BI	GGWCC	5 cut(s)	58, 172, 758, 839, 875
XagI	CCTNNNNNAGG	1 cut(s)	665
XapI	RAATTY	1 cut(s)	321
XceI	RCATGY	3 cut(s)	275, 1027, 1198
XcmI	CCANNNNNNNNNTGG	1 cut(s)	779
XmiI	GTMKAC	1 cut(s)	45
XspI	CTAG	7 cut(s)	516, 536, 657, 1134, 1224, 1245, 1304
Zsp2I	ATGCAT	2 cut(s)	182, 277

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.