Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006580

Physical Location & Seq

Genomic Coordinates Forward (+)

61186989 .. 61189055

Gene Structure 2067 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0481800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1263 bp

ATGCCGTCACCCGAGCGCAGCTCGGAGTCGACATGGACGCGCAAGTCTCAGCGGGAGTTGAGTCTAGCTGATCGGGGAATGTCACCGGAGTGGTTCGAACTAGGCCTCGAAAATTGGGTTGATAACACTCGAAGCATGGAGAATATAAAGAGGAGCTATGAACATCTTGAGAGCGTTGAGTTAAAGATGTGCTGTCTATCTCTTTCAATATTCCCTCCTAATTCTGTCATAAAGAAGAGGCCTCTAATTTACTGGTGGATTGGCGAGTGTTTCGTCACAACCACTCAAGACAGGACAGCTGAAGAGACAGTGTTCAATGTGAACGAACAAAATCTTAGTTTGAAACGGGAATGGCTTAAGAAGCTGAAAAAAGTTGAGGTGATTCATGTAGGACGGTGGCAGAACTCGGCTTCAGATCACATTGAAGTCGAAGATGAAGGGTTTTTGAAAGGTTTAGGGGCTCAGAATAAGCTGTTGAAGAATCTTAGCCTCCGAGGGATATCAGGAATTACCAGACTCCCTTCTTCAATCTTGAAGCTTCTCAACCTTGAAATTCTTGATCTGAGGGCATGCCACAGCTTACAGACATTGCCTCCAGATATCTCACCATTGAGGAATCTCACGCATTTCGACATATCCGAGTGTTACTTGCTTGAAGCAATGCCGAAAGGAATTGAAAAGCTGCCTTCTCTTCAAGTGCTAAAAGGCTTTGTGATTGTAGATTTGGAAGGAACTCCGTGCAGAATTAGCGATCTTGCACAGCTGAGGCATCTAAAGCGGCTGAGTATACACATGGGCAATCAGGCTGAAGTTCAAAAGGGGGAGTTCCACAATTTGAAGAAAATCTTATCTCTTCGCCACCTCAAACTATCATGGGGAGTAGTTTCTCCAAACTTGAAAGCAAAAGTTGCCTTCCAGTCCTTGGAGTTGTTTTTTCCGCCGGATTTAGAAAAATTGGATCTTCAAGGCATCCCTATAGCATGTGTACCAGAATGGTTGAACCCTGACAAGCTCAAGAATTTAAAAAAGCTCTATATAAGGGGTGGGGAACTTGATAGCTTGGATCATGGAGAGACTGACAAGTGGACAGTTGAAGTCTTGCGGCTCAAGCACTTAAATAATTTGGAGATAGGTTTGCCAAAGTCGAAGGATGAGTTTCCTCGTCTGCACTATTTGGAGAAAATCAACTGTCATGAGATTGAAAACGATCGATACGATGAAGACATTGTTTGGAGTGAATATGCAGGGTACCCCTGTACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022603 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0060688 GO:0065007 GO:0080090 GO:0140110 GO:1900618 GO:1903506 GO:1905428 GO:2000026 GO:2000028 GO:2000032 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

420

Amino Acids

48.43

Weight (kDa)

6.52

Isoelectric Point (pI)

49.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
LRR_14	PF23598	158 - 352	1.2e-22	Leucine-rich repeat region
LRR_R13L1-DRL21	PF25019	249 - 354	1e-06	R13L1/DRL21 LRRs

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21880 AT3G21880 AT3G21880 AT4G15250
fragaria_vesca	FvH4_6g43570
malus_domestica	MD09G1104700.v1.1
prunus_persica	Prupe.3G220900_v2.0.a1
pyrus_communis	pycom09g02770 pycom17g08960 pycom17g08970 pycom17g08990
rosa_chinensis	RchiOBHm_Chr2g0160151
rosa_laevigata	RLG00000021200
rosa_multiflora	Rmu_sc0000403.1_g000012
rosa_roxburghii	Rroxscaffold_2G00090010
rosa_rugosa	Rorug02G0481400.1 Rorug02G0481500.1 Rorug02G0481600 Rorug02G0481700 Rorug02G0481800 Rorug02G0481900
rosa_samantha	Rh2AG547400 Rh2BG560600 Rh2CG531000 Rh2DG569300
rosa_wichuraiana	Rw2G045260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	43
Acc65I	GGTACC	1 cut(s)	1248
AccB1I	GGYRCC	1 cut(s)	1248
AccB7I	CCANNNNNTGG	1 cut(s)	922
AccI	GTMKAC	2 cut(s)	29, 787
AccII	CGCG	1 cut(s)	40
AciI	CCGC	4 cut(s)	52, 778, 938, 1102
AclWI	GGATC	2 cut(s)	966, 1071
AcsI	RAATTY	2 cut(s)	552, 1018
AcuI	CTGAAG	3 cut(s)	321, 396, 828
AfaI	GTAC	3 cut(s)	987, 1250, 1258
AfiI	CCNNNNNNNGG	1 cut(s)	922
AflII	CTTAAG	1 cut(s)	356
AleI	CACNNNNGTG	1 cut(s)	88
Alw26I	GTCTC	3 cut(s)	51, 299, 1067
AlwI	GGATC	2 cut(s)	966, 1071
Ama87I	CYCGRG	1 cut(s)	11
AoxI	GGCC	2 cut(s)	103, 239
ApeKI	GCWGC	2 cut(s)	18, 682
ApoI	RAATTY	2 cut(s)	552, 1018
Asp718I	GGTACC	1 cut(s)	1248
AspLEI	GCGC	2 cut(s)	18, 42
AsuHPI	GGTGA	3 cut(s)	75, 391, 597
AsuII	TTCGAA	1 cut(s)	96
AvaI	CYCGRG	1 cut(s)	11
BaeI	ACNNNNGTAYC	1 cut(s)	1240
BanI	GGYRCC	1 cut(s)	1248
BanII	GRGCYC	1 cut(s)	463
BbsI	GAAGAC	1 cut(s)	1227
BbvCI	CCTCAGC	1 cut(s)	764
BbvI	GCAGC	2 cut(s)	30, 669
BcoDI	GTCTC	3 cut(s)	51, 299, 1067
BfaI	CTAG	2 cut(s)	65, 101
BfmI	CTRYAG	1 cut(s)	975
BfrI	CTTAAG	1 cut(s)	356
BisI	GCNGC	4 cut(s)	19, 683, 779, 1103
BlsI	GCNGC	4 cut(s)	20, 684, 780, 1104
BmeT110I	CYCGRG	1 cut(s)	11
BmiI	GGNNCC	1 cut(s)	1250
BmsI	GCATC	2 cut(s)	778, 978
BpiI	GAAGAC	1 cut(s)	1227
BplI	GAGNNNNNCTC	1 cut(s)	37
BpmI	CTGGAG	1 cut(s)	579
Bpu10I	CCTNAGC	1 cut(s)	764
Bpu14I	TTCGAA	1 cut(s)	96
BpuEI	CTTGAG	4 cut(s)	188, 270, 998, 1091
Bsa29I	ATCGAT	1 cut(s)	1210
BsaJI	CCNNGG	2 cut(s)	493, 921
BsaWI	WCCGGW	1 cut(s)	85
BsaXI	ACNNNNNCTCC	2 cut(s)	577, 607
Bsc4I	CCNNNNNNNGG	1 cut(s)	922
Bse1I	ACTGG	2 cut(s)	257, 916
Bse3DI	GCAATG	2 cut(s)	587, 666
BseCI	ATCGAT	1 cut(s)	1210
BseDI	CCNNGG	2 cut(s)	493, 921
BseGI	GGATG	2 cut(s)	969, 1156
BseLI	CCNNNNNNNGG	1 cut(s)	922
BseMI	GCAATG	2 cut(s)	587, 666
BseMII	CTCAG	5 cut(s)	62, 476, 554, 755, 773
BseNI	ACTGG	2 cut(s)	257, 916
BseRI	GAGGAG	1 cut(s)	166
BseXI	GCAGC	2 cut(s)	30, 669
BsgI	GTGCAG	2 cut(s)	760, 1151
Bsh1236I	CGCG	1 cut(s)	40
Bsh1285I	CGRYCG	1 cut(s)	1210
BshFI	GGCC	2 cut(s)	105, 241
BshNI	GGYRCC	1 cut(s)	1248
BshVI	ATCGAT	1 cut(s)	1210
BsiEI	CGRYCG	1 cut(s)	1210
BsiHKCI	CYCGRG	1 cut(s)	11
BsiSI	CCGG	2 cut(s)	86, 941
BslI	CCNNNNNNNGG	1 cut(s)	922
BsmAI	GTCTC	3 cut(s)	51, 299, 1067
BsnI	GGCC	2 cut(s)	105, 241
BsoBI	CYCGRG	1 cut(s)	11
Bsp119I	TTCGAA	1 cut(s)	96
Bsp1286I	GDGCHC	1 cut(s)	463
Bsp1407I	TGTACA	1 cut(s)	1256
Bsp143I	GATC	7 cut(s)	70, 415, 559, 751, 958, 1063, 1207
BspACI	CCGC	4 cut(s)	52, 778, 938, 1102
BspANI	GGCC	2 cut(s)	105, 241
BspCNI	CTCAG	5 cut(s)	61, 475, 555, 756, 774
BspDI	ATCGAT	1 cut(s)	1210
BspFNI	CGCG	1 cut(s)	40
BspHI	TCATGA	1 cut(s)	1192
BspLI	GGNNCC	1 cut(s)	1250
BspPI	GGATC	2 cut(s)	966, 1071
BspT104I	TTCGAA	1 cut(s)	96
BspT107I	GGYRCC	1 cut(s)	1248
BspTI	CTTAAG	1 cut(s)	356
BsrDI	GCAATG	2 cut(s)	587, 666
BsrGI	TGTACA	1 cut(s)	1256
BsrI	ACTGG	2 cut(s)	257, 916
BssECI	CCNNGG	2 cut(s)	493, 921
BssMI	GATC	7 cut(s)	70, 415, 559, 751, 958, 1063, 1207
BssNAI	GTATAC	1 cut(s)	788
BssT1I	CCWWGG	1 cut(s)	921
Bst1107I	GTATAC	1 cut(s)	788
Bst4CI	ACNGT	4 cut(s)	310, 396, 1090, 1190
Bst6I	CTCTTC	4 cut(s)	230, 297, 696, 858
BstAFI	CTTAAG	1 cut(s)	356
BstAPI	GCANNNNNTGC	1 cut(s)	908
BstAUI	TGTACA	1 cut(s)	1256
BstBI	TTCGAA	1 cut(s)	96
BstC8I	GCNNGC	1 cut(s)	571
BstDEI	CTNAG	7 cut(s)	48, 335, 462, 485, 563, 764, 782
BstF5I	GGATG	2 cut(s)	969, 1156
BstFNI	CGCG	1 cut(s)	40
BstHHI	GCGC	2 cut(s)	18, 42
BstKTI	GATC	7 cut(s)	73, 418, 562, 754, 961, 1066, 1210
BstMAI	GTCTC	3 cut(s)	51, 299, 1067
BstMBI	GATC	7 cut(s)	70, 415, 559, 751, 958, 1063, 1207
BstMCI	CGRYCG	1 cut(s)	1210
BstMWI	GCNNNNNNNGC	5 cut(s)	361, 747, 775, 908, 1108
BstNSI	RCATGY	2 cut(s)	573, 984
BstSFI	CTRYAG	1 cut(s)	975
BstUI	CGCG	1 cut(s)	40
BstV1I	GCAGC	2 cut(s)	30, 669
BstV2I	GAAGAC	1 cut(s)	1227
BstX2I	RGATCY	1 cut(s)	958
BstYI	RGATCY	1 cut(s)	958
BstZ17I	GTATAC	1 cut(s)	788
Bsu15I	ATCGAT	1 cut(s)	1210
BsuRI	GGCC	2 cut(s)	105, 241
BsuTUI	ATCGAT	1 cut(s)	1210
BtsCI	GGATG	2 cut(s)	969, 1156
BtsIMutI	CAGTG	1 cut(s)	315
Cac8I	GCNNGC	1 cut(s)	571
CciI	TCATGA	1 cut(s)	1192
CfoI	GCGC	2 cut(s)	18, 42
ClaI	ATCGAT	1 cut(s)	1210
CseI	GACGC	1 cut(s)	46
Csp6I	GTAC	3 cut(s)	986, 1249, 1257
CviQI	GTAC	3 cut(s)	986, 1249, 1257
DdeI	CTNAG	7 cut(s)	48, 335, 462, 485, 563, 764, 782
DpnI	GATC	7 cut(s)	72, 417, 561, 753, 960, 1065, 1209
DpnII	GATC	7 cut(s)	70, 415, 559, 751, 958, 1063, 1207
DraI	TTTAAA	1 cut(s)	1023
DrdI	GACNNNNNNGTC	1 cut(s)	43
DseDI	GACNNNNNNGTC	1 cut(s)	43
Eam1104I	CTCTTC	4 cut(s)	230, 297, 696, 858
EarI	CTCTTC	4 cut(s)	230, 297, 696, 858
EciI	GGCGGA	1 cut(s)	927
Eco130I	CCWWGG	1 cut(s)	921
Eco147I	AGGCCT	2 cut(s)	105, 241
Eco24I	GRGCYC	1 cut(s)	463
Eco32I	GATATC	2 cut(s)	501, 601
Eco57I	CTGAAG	3 cut(s)	321, 396, 828
Eco88I	CYCGRG	1 cut(s)	11
EcoRV	GATATC	2 cut(s)	501, 601
EcoT14I	CCWWGG	1 cut(s)	921
EcoT38I	GRGCYC	1 cut(s)	463
ErhI	CCWWGG	1 cut(s)	921
FalI	AAGNNNNNCTT	2 cut(s)	830, 862
FauI	CCCGC	1 cut(s)	45
FblI	GTMKAC	2 cut(s)	29, 787
Fnu4HI	GCNGC	4 cut(s)	19, 683, 779, 1103
FokI	GGATG	2 cut(s)	956, 1163
FriOI	GRGCYC	1 cut(s)	463
Fsp4HI	GCNGC	4 cut(s)	19, 683, 779, 1103
FspBI	CTAG	2 cut(s)	65, 101
GlaI	GCGC	2 cut(s)	17, 41
GluI	GCNGC	4 cut(s)	19, 683, 779, 1103
GsuI	CTGGAG	1 cut(s)	579
HaeIII	GGCC	2 cut(s)	105, 241
HapII	CCGG	2 cut(s)	86, 941
HgaI	GACGC	1 cut(s)	46
HhaI	GCGC	2 cut(s)	18, 42
Hin6I	GCGC	2 cut(s)	16, 40
HinP1I	GCGC	2 cut(s)	16, 40
HincII	GTYRAC	1 cut(s)	30
HindII	GTYRAC	1 cut(s)	30
HindIII	AAGCTT	1 cut(s)	536
HinfI	GANTC	6 cut(s)	26, 61, 382, 481, 516, 616
HpaII	CCGG	2 cut(s)	86, 941
HphI	GGTGA	3 cut(s)	75, 391, 597
Hpy166II	GTNNAC	5 cut(s)	30, 322, 788, 986, 1086
Hpy188I	TCNGA	6 cut(s)	25, 415, 465, 494, 564, 640
Hpy188III	TCNNGA	8 cut(s)	167, 287, 504, 532, 557, 596, 1015, 1193
Hpy8I	GTNNAC	5 cut(s)	30, 322, 788, 986, 1086
HpyAV	CCTTC	6 cut(s)	431, 531, 696, 722, 922, 1141
HpyCH4III	ACNGT	4 cut(s)	310, 396, 1090, 1190
HpyCH4V	TGCA	4 cut(s)	741, 758, 1168, 1244
HpyF10VI	GCNNNNNNNGC	5 cut(s)	361, 747, 775, 908, 1108
HpyF3I	CTNAG	7 cut(s)	48, 335, 462, 485, 563, 764, 782
HspAI	GCGC	2 cut(s)	16, 40
KpnI	GGTACC	1 cut(s)	1252
Kzo9I	GATC	7 cut(s)	70, 415, 559, 751, 958, 1063, 1207
LmnI	GCTCC	1 cut(s)	153
Lsp1109I	GCAGC	2 cut(s)	30, 669
LweI	GCATC	2 cut(s)	778, 978
MaeI	CTAG	2 cut(s)	65, 101
MaeIII	GTNAC	4 cut(s)	6, 81, 274, 644
MalI	GATC	7 cut(s)	72, 417, 561, 753, 960, 1065, 1209
MboI	GATC	7 cut(s)	70, 415, 559, 751, 958, 1063, 1207
MflI	RGATCY	1 cut(s)	958
MhlI	GDGCHC	1 cut(s)	463
MlyI	GAGTC	3 cut(s)	35, 70, 510
MseI	TTAA	4 cut(s)	182, 357, 1022, 1115
MslI	CAYNNNNRTG	1 cut(s)	88
MspA1I	CMGCKG	3 cut(s)	52, 299, 763
MspCI	CTTAAG	1 cut(s)	356
MspI	CCGG	2 cut(s)	86, 941
MvnI	CGCG	1 cut(s)	40
MwoI	GCNNNNNNNGC	5 cut(s)	361, 747, 775, 908, 1108
NdeII	GATC	7 cut(s)	70, 415, 559, 751, 958, 1063, 1207
NlaIV	GGNNCC	1 cut(s)	1250
NmeAIII	GCCGAG	1 cut(s)	386
NmuCI	GTSAC	3 cut(s)	6, 81, 274
NspI	RCATGY	2 cut(s)	573, 984
NspV	TTCGAA	1 cut(s)	96
OliI	CACNNNNGTG	1 cut(s)	88
PaeI	GCATGC	1 cut(s)	573
PagI	TCATGA	1 cut(s)	1192
PceI	AGGCCT	2 cut(s)	105, 241
PcsI	WCGNNNNNNNCGW	2 cut(s)	636, 1212
PfeI	GAWTC	3 cut(s)	382, 481, 616
PflMI	CCANNNNNTGG	1 cut(s)	922
PkrI	GCNGC	4 cut(s)	20, 684, 780, 1104
Ple19I	CGATCG	1 cut(s)	1210
PleI	GAGTC	3 cut(s)	34, 69, 510
PpsI	GAGTC	3 cut(s)	34, 69, 510
PspN4I	GGNNCC	1 cut(s)	1250
PsuI	RGATCY	1 cut(s)	958
PvuI	CGATCG	1 cut(s)	1210
PvuII	CAGCTG	2 cut(s)	299, 763
RsaI	GTAC	3 cut(s)	987, 1250, 1258
RsaNI	GTAC	3 cut(s)	986, 1249, 1257
RseI	CAYNNNNRTG	1 cut(s)	88
SalI	GTCGAC	1 cut(s)	28
SaqAI	TTAA	4 cut(s)	182, 357, 1022, 1115
SatI	GCNGC	4 cut(s)	19, 683, 779, 1103
Sau3AI	GATC	7 cut(s)	70, 415, 559, 751, 958, 1063, 1207
SchI	GAGTC	3 cut(s)	35, 70, 510
SduI	GDGCHC	1 cut(s)	463
SfaNI	GCATC	2 cut(s)	778, 978
SfcI	CTRYAG	1 cut(s)	975
SfuI	TTCGAA	1 cut(s)	96
SmiMI	CAYNNNNRTG	1 cut(s)	88
SmlI	CTYRAG	5 cut(s)	167, 285, 356, 1013, 1106
SmoI	CTYRAG	5 cut(s)	167, 285, 356, 1013, 1106
SphI	GCATGC	1 cut(s)	573
SseBI	AGGCCT	2 cut(s)	105, 241
SsiI	CCGC	4 cut(s)	52, 778, 938, 1102
SspI	AATATT	1 cut(s)	210
SspMI	CTAG	2 cut(s)	65, 101
StuI	AGGCCT	2 cut(s)	105, 241
StyI	CCWWGG	1 cut(s)	921
TaaI	ACNGT	4 cut(s)	310, 396, 1090, 1190
TaqI	TCGA	8 cut(s)	29, 96, 108, 130, 429, 630, 1145, 1210
TatI	WGTACW	1 cut(s)	1256
TauI	GCSGC	2 cut(s)	781, 1105
TfiI	GAWTC	3 cut(s)	382, 481, 616
Tru1I	TTAA	4 cut(s)	182, 357, 1022, 1115
Tru9I	TTAA	4 cut(s)	182, 357, 1022, 1115
TscAI	CASTG	1 cut(s)	315
TseFI	GTSAC	3 cut(s)	6, 81, 274
TseI	GCWGC	2 cut(s)	18, 682
Tsp45I	GTSAC	3 cut(s)	6, 81, 274
TspDTI	ATGAA	4 cut(s)	174, 374, 450, 1233
TspGWI	ACGGA	1 cut(s)	726
TspRI	CASTG	1 cut(s)	315
Van91I	CCANNNNNTGG	1 cut(s)	922
Vha464I	CTTAAG	1 cut(s)	356
XapI	RAATTY	2 cut(s)	552, 1018
XceI	RCATGY	2 cut(s)	573, 984
XmiI	GTMKAC	2 cut(s)	29, 787
XspI	CTAG	2 cut(s)	65, 101

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.