pycom09g02770

Zinc finger protein CONSTANS-like

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
Physical Location & Seq
Reverse (-)
2044511 .. 2047378
2868 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g02770.1

Sequence Viewer

Length: 1377 bp
ATGGAGCCTCTATGTGAGTTTTGTGGGATGGCAATGGCAGTTGTCTACTGTAAATCAGATATGGCTCGCCTTTGCTTGTACTGTGATGGATGCGTGCACTCAGCTAACGCTTTGTCACGCCGGCACCCTCGTTTCCTTCTATGCGACAAGTGCAATGCTCAACCTGCTATCATCCGATGTATGGATGAGAAGACGTCCTTATGTCAGAGCTGTGATCACTGGAGTCATAACAATACTAGCATTAATGGAATTACTACTGCTTCAGCAGGAGGTGGGATGGGGGGACATAGGACACATGCATTGACTTGTTACACGGGTTGCCCTAGTTTGTCTGAGTTTTCGAGAATTTGGTCGGTTCTTGAAGGATCTTCTTCAGGTGGTAATTTTGAAAGTAGTAACTGGGATCAGTCACTTGGATCAGCTGTAGTGGCAACAAACCAGGATCAGACTAATTACATTAGTAATAATGGTTTGGAAGGTAGAGATAATAATGACAGATCATTTGGGGTGGTTGTCACTGCTGGCACGTTGAATGGAGGATCATCATTAGATCAGTCTTGTGGCCGCAAGTTTGATACTTGGATAGCCAGTAGTTCAACTTTGATTCCATCGAATCCGAATTGCACTCCTCACGGTAAAGATCAAACACCTTTCTTGCCTCAGGAGTCTAGCCTGCCAAAGGGTTGTACCAATTTTAAAGATCTTGCAATTCAGGATAGCAATGTTCTATGTGATGGCCTCAACGTTGATGATGTTCCATTGACCTTTGAAAATCCTGATGGGATATTCTGTCCACAAGTTCCTTCTCGATACCAGTTTGAGGATAGACTCGATAGAGAAATGGATTGCCTGTTAATGGAGAAAAGCTTATCAGTCACTGAATCTAATGGTCCTAATGAGAATGCTGCACAGGCATCATCATCAGGACAACAAGAACGTGCAGCATTTCAATCCTCTTGTGGATCAGATACTGTTATGCCAGGCATGAATGGTAGTGCAAACTGCTTACTCATGAATCCTACTTGCAGCAGAAGCATCAACCTTGGATTTCCTACCGTGCAACAAGTTCATCCGAGCATGTCACTTACACTGCCCAGCATCAGCAGGGAAAGCAATCCTGATTACCAAGATTGTGAATTGTCAACAGTCTTTCTAACCGGAGAGCCTTGGGAGTCAACTTTGGAGGCTAGCAGTCCACAAGCAAGGGACAAAGCTAAGATGAGATACAAGGAGAAAAAGAAAACTCGCACGTTTGGTAAACAAATAAGATATGCCTCTAGGAAGGCCAGAGCTGATACCAGAAAACGCGTCAAAGGAAGATTTGTTAAAGCTGGTGAAGAATATGATTACGATCCCCTTGTGACAACGAGCTTCTGA

Protein Analysis

459

Amino Acids

50.03

Weight (kDa)

5.7

Isoelectric Point (pI)

44.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCT PF06203 402 - 444 4.6e-17 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 197
Acc36I ACCTGC 1 cut(s) 172
AccB1I GGYRCC 1 cut(s) 123
AccI GTMKAC 1 cut(s) 45
AccII CGCG 1 cut(s) 1308
AciI CCGC 1 cut(s) 565
AclI AACGTT 1 cut(s) 744
AclWI GGATC 7 cut(s) 373, 411, 424, 450, 547, 970, 1346
AcoI YGGCCR 1 cut(s) 562
AcsI RAATTY 1 cut(s) 345
AcuI CTGAAG 2 cut(s) 246, 357
AcyI GRCGYC 1 cut(s) 194
AfaI GTAC 2 cut(s) 80, 688
AfiI CCNNNNNNNGG 4 cut(s) 181, 679, 820, 856
AflIII ACRYGT 1 cut(s) 1306
AgsI TTSAA 6 cut(s) 362, 389, 532, 597, 770, 950
AjnI CCWGG 2 cut(s) 438, 979
AluBI AGCT 8 cut(s) 104, 210, 422, 867, 1214, 1292, 1331, 1371
AluI AGCT 8 cut(s) 104, 210, 422, 867, 1214, 1292, 1331, 1371
Alw21I GWGCWC 1 cut(s) 99
Alw44I GTGCAC 1 cut(s) 95
AlwI GGATC 7 cut(s) 373, 411, 424, 450, 547, 970, 1346
AlwNI CAGNNNCTG 2 cut(s) 878, 971
AoxI GGCC 3 cut(s) 562, 736, 1284
ApaLI GTGCAC 1 cut(s) 95
ApeKI GCWGC 3 cut(s) 905, 941, 1026
ApoI RAATTY 1 cut(s) 345
ArsI GACNNNNNNTTYG 2 cut(s) 485, 517
AseI ATTAAT 1 cut(s) 243
AspS9I GGNCC 1 cut(s) 890
AsuHPI GGTGA 1 cut(s) 1346
AsuNHI GCTAGC 1 cut(s) 1187
AvaII GGWCC 1 cut(s) 890
AxyI CCTNAGG 1 cut(s) 660
BaeGI GKGCMC 1 cut(s) 99
BanI GGYRCC 1 cut(s) 123
BbsI GAAGAC 1 cut(s) 197
Bbv12I GWGCWC 1 cut(s) 99
BbvI GCAGC 3 cut(s) 892, 953, 1038
BccI CCATC 6 cut(s) 22, 80, 271, 616, 728, 773
BciT130I CCWGG 2 cut(s) 440, 981
BclI TGATCA 1 cut(s) 214
BfaI CTAG 5 cut(s) 237, 324, 669, 1188, 1278
BfmI CTRYAG 1 cut(s) 423
BfuAI ACCTGC 1 cut(s) 172
BglII AGATCT 1 cut(s) 700
BisI GCNGC 4 cut(s) 565, 906, 942, 1027
BlsI GCNGC 4 cut(s) 566, 907, 943, 1028
Bme1390I CCNGG 2 cut(s) 440, 981
Bme18I GGWCC 1 cut(s) 890
BmgT120I GGNCC 1 cut(s) 890
BmiI GGNNCC 2 cut(s) 6, 125
BmrFI CCNGG 2 cut(s) 440, 981
BmrI ACTGGG 1 cut(s) 409
BmsI GCATC 4 cut(s) 80, 923, 1044, 1107
BmtI GCTAGC 1 cut(s) 1191
BmuI ACTGGG 1 cut(s) 409
BpiI GAAGAC 1 cut(s) 197
BpmI CTGGAG 1 cut(s) 241
BsaBI GATNNNNATC 1 cut(s) 1350
BsaHI GRCGYC 1 cut(s) 194
BsaJI CCNNGG 2 cut(s) 1042, 1166
BsaWI WCCGGW 1 cut(s) 1157
Bsc4I CCNNNNNNNGG 4 cut(s) 181, 679, 820, 856
Bse118I RCCGGY 1 cut(s) 120
Bse1I ACTGG 4 cut(s) 224, 404, 588, 814
Bse21I CCTNAGG 1 cut(s) 660
Bse3DI GCAATG 3 cut(s) 39, 160, 727
Bse8I GATNNNNATC 1 cut(s) 1350
BseBI CCWGG 2 cut(s) 440, 981
BseDI CCNNGG 2 cut(s) 1042, 1166
BseGI GGATG 6 cut(s) 33, 95, 171, 190, 282, 1069
BseJI GATNNNNATC 1 cut(s) 1350
BseLI CCNNNNNNNGG 4 cut(s) 181, 679, 820, 856
BseMI GCAATG 3 cut(s) 39, 160, 727
BseMII CTCAG 3 cut(s) 114, 324, 674
BseNI ACTGG 4 cut(s) 224, 404, 588, 814
BseRI GAGGAG 1 cut(s) 618
BseSI GKGCMC 1 cut(s) 99
BseXI GCAGC 3 cut(s) 892, 953, 1038
BseYI CCCAGC 1 cut(s) 1094
BsgI GTGCAG 2 cut(s) 891, 960
Bsh1236I CGCG 1 cut(s) 1308
BshFI GGCC 3 cut(s) 564, 738, 1286
BshNI GGYRCC 1 cut(s) 123
BsiHKAI GWGCWC 1 cut(s) 99
BsiSI CCGG 2 cut(s) 121, 1158
BslFI GGGAC 2 cut(s) 297, 1220
BslI CCNNNNNNNGG 4 cut(s) 181, 679, 820, 856
BsmFI GGGAC 2 cut(s) 297, 1220
BsmI GAATGC 1 cut(s) 907
BsnI GGCC 3 cut(s) 564, 738, 1286
Bsp1286I GDGCHC 1 cut(s) 99
BspACI CCGC 1 cut(s) 565
BspANI GGCC 3 cut(s) 564, 738, 1286
BspCNI CTCAG 3 cut(s) 113, 325, 673
BspFNI CGCG 1 cut(s) 1308
BspHI TCATGA 1 cut(s) 1011
BspLI GGNNCC 2 cut(s) 6, 125
BspMI ACCTGC 1 cut(s) 172
BspOI GCTAGC 1 cut(s) 1191
BspPI GGATC 7 cut(s) 373, 411, 424, 450, 547, 970, 1346
BspT107I GGYRCC 1 cut(s) 123
BsrDI GCAATG 3 cut(s) 39, 160, 727
BsrFI RCCGGY 1 cut(s) 120
BsrI ACTGG 4 cut(s) 224, 404, 588, 814
BssAI RCCGGY 1 cut(s) 120
BssECI CCNNGG 2 cut(s) 1042, 1166
BssNI GRCGYC 1 cut(s) 194
BssT1I CCWWGG 2 cut(s) 1042, 1166
Bst2UI CCWGG 2 cut(s) 440, 981
Bst4CI ACNGT 6 cut(s) 50, 83, 635, 973, 1057, 1147
BstACI GRCGYC 1 cut(s) 194
BstC8I GCNNGC 6 cut(s) 67, 95, 122, 523, 674, 1189
BstDEI CTNAG 4 cut(s) 100, 333, 660, 1215
BstENI CCTNNNNNAGG 1 cut(s) 677
BstF5I GGATG 6 cut(s) 33, 95, 171, 190, 282, 1069
BstFNI CGCG 1 cut(s) 1308
BstMWI GCNNNNNNNGC 6 cut(s) 150, 164, 428, 911, 1032, 1110
BstNI CCWGG 2 cut(s) 440, 981
BstNSI RCATGY 2 cut(s) 299, 1081
BstSCI CCNGG 2 cut(s) 438, 979
BstSFI CTRYAG 1 cut(s) 423
BstSLI GKGCMC 1 cut(s) 99
BstUI CGCG 1 cut(s) 1308
BstV1I GCAGC 3 cut(s) 892, 953, 1038
BstV2I GAAGAC 1 cut(s) 197
BstX2I RGATCY 2 cut(s) 365, 700
BstYI RGATCY 2 cut(s) 365, 700
Bsu36I CCTNAGG 1 cut(s) 660
BsuRI GGCC 3 cut(s) 564, 738, 1286
BtsCI GGATG 6 cut(s) 33, 95, 171, 190, 282, 1069
BtsI GCAGTG 2 cut(s) 516, 1088
BtsIMutI CAGTG 4 cut(s) 217, 516, 876, 1088
BveI ACCTGC 1 cut(s) 172
Cac8I GCNNGC 6 cut(s) 67, 95, 122, 523, 674, 1189
CaiI CAGNNNCTG 2 cut(s) 878, 971
CciI TCATGA 1 cut(s) 1011
Cfr10I RCCGGY 1 cut(s) 120
Cfr13I GGNCC 1 cut(s) 890
CseI GACGC 1 cut(s) 1297
Csp6I GTAC 2 cut(s) 79, 687
CviAII CATG 4 cut(s) 296, 985, 1012, 1078
CviQI GTAC 2 cut(s) 79, 687
DdeI CTNAG 4 cut(s) 100, 333, 660, 1215
DraI TTTAAA 1 cut(s) 697
EaeI YGGCCR 1 cut(s) 562
Eco130I CCWWGG 2 cut(s) 1042, 1166
Eco47I GGWCC 1 cut(s) 890
Eco57I CTGAAG 2 cut(s) 246, 357
Eco81I CCTNAGG 1 cut(s) 660
EcoNI CCTNNNNNAGG 1 cut(s) 677
EcoRII CCWGG 2 cut(s) 438, 979
EcoT14I CCWWGG 2 cut(s) 1042, 1166
EcoT22I ATGCAT 1 cut(s) 301
ErhI CCWWGG 2 cut(s) 1042, 1166
FaeI CATG 4 cut(s) 299, 988, 1015, 1081
FalI AAGNNNNNCTT 2 cut(s) 182, 214
FaqI GGGAC 2 cut(s) 297, 1220
FatI CATG 4 cut(s) 295, 984, 1011, 1077
FbaI TGATCA 1 cut(s) 214
FblI GTMKAC 1 cut(s) 45
Fnu4HI GCNGC 4 cut(s) 565, 906, 942, 1027
FokI GGATG 6 cut(s) 40, 102, 158, 197, 289, 1056
Fsp4HI GCNGC 4 cut(s) 565, 906, 942, 1027
FspBI CTAG 5 cut(s) 237, 324, 669, 1188, 1278
GluI GCNGC 4 cut(s) 565, 906, 942, 1027
GsaI CCCAGC 1 cut(s) 1098
GsuI CTGGAG 1 cut(s) 241
HaeIII GGCC 3 cut(s) 564, 738, 1286
HapII CCGG 2 cut(s) 121, 1158
HgaI GACGC 1 cut(s) 1297
Hin1I GRCGYC 1 cut(s) 194
Hin1II CATG 4 cut(s) 299, 988, 1015, 1081
HincII GTYRAC 2 cut(s) 1143, 1176
HindII GTYRAC 2 cut(s) 1143, 1176
HindIII AAGCTT 1 cut(s) 865
HinfI GANTC 8 cut(s) 223, 604, 613, 665, 828, 881, 1015, 1172
HpaII CCGG 2 cut(s) 121, 1158
HphI GGTGA 1 cut(s) 1346
Hpy166II GTNNAC 7 cut(s) 46, 97, 794, 1143, 1176, 1196, 1259
Hpy188I TCNGA 9 cut(s) 58, 176, 207, 334, 447, 618, 967, 1074, 1376
Hpy188III TCNNGA 9 cut(s) 342, 359, 662, 713, 776, 807, 924, 1012, 1118
Hpy8I GTNNAC 7 cut(s) 46, 97, 794, 1143, 1176, 1196, 1259
HpyAV CCTTC 5 cut(s) 146, 356, 470, 813, 1276
HpyCH4III ACNGT 6 cut(s) 50, 83, 635, 973, 1057, 1147
HpyCH4IV ACGT 5 cut(s) 194, 527, 744, 937, 1250
HpyF10VI GCNNNNNNNGC 6 cut(s) 150, 164, 428, 911, 1032, 1110
HpyF3I CTNAG 4 cut(s) 100, 333, 660, 1215
HpySE526I ACGT 5 cut(s) 194, 527, 744, 937, 1250
Hsp92I GRCGYC 1 cut(s) 194
Hsp92II CATG 4 cut(s) 299, 988, 1015, 1081
KroI GCCGGC 1 cut(s) 120
KroNI GCCGGC 1 cut(s) 122
Ksp22I TGATCA 1 cut(s) 214
LmnI GCTCC 1 cut(s) 4
Lsp1109I GCAGC 3 cut(s) 892, 953, 1038
LweI GCATC 4 cut(s) 80, 923, 1044, 1107
MaeI CTAG 5 cut(s) 237, 324, 669, 1188, 1278
MaeII ACGT 5 cut(s) 194, 527, 744, 937, 1250
MaeIII GTNAC 8 cut(s) 114, 308, 395, 408, 514, 874, 1080, 1360
MboII GAAGA 5 cut(s) 202, 360, 363, 1329, 1349
MflI RGATCY 2 cut(s) 365, 700
MhlI GDGCHC 1 cut(s) 99
MluCI AATT 8 cut(s) 249, 345, 382, 451, 619, 691, 708, 1136
MluI ACGCGT 1 cut(s) 1306
MlyI GAGTC 4 cut(s) 232, 674, 822, 1181
Mph1103I ATGCAT 1 cut(s) 301
MroNI GCCGGC 1 cut(s) 120
MseI TTAA 4 cut(s) 243, 696, 854, 1326
MspA1I CMGCKG 1 cut(s) 422
MspI CCGG 2 cut(s) 121, 1158
MspR9I CCNGG 2 cut(s) 440, 981
Mva1269I GAATGC 1 cut(s) 907
MvaI CCWGG 2 cut(s) 440, 981
MvnI CGCG 1 cut(s) 1308
MwoI GCNNNNNNNGC 6 cut(s) 150, 164, 428, 911, 1032, 1110
NaeI GCCGGC 1 cut(s) 122
NgoMIV GCCGGC 1 cut(s) 120
NheI GCTAGC 1 cut(s) 1187
NlaIII CATG 4 cut(s) 299, 988, 1015, 1081
NlaIV GGNNCC 2 cut(s) 6, 125
NmuCI GTSAC 6 cut(s) 114, 408, 514, 874, 1080, 1360
NsiI ATGCAT 1 cut(s) 301
NspI RCATGY 2 cut(s) 299, 1081
PagI TCATGA 1 cut(s) 1011
PctI GAATGC 1 cut(s) 907
PdiI GCCGGC 1 cut(s) 122
PfeI GAWTC 4 cut(s) 604, 613, 881, 1015
PkrI GCNGC 4 cut(s) 566, 907, 943, 1028
PleI GAGTC 4 cut(s) 231, 673, 822, 1180
PpsI GAGTC 4 cut(s) 231, 673, 822, 1180
PshBI ATTAAT 1 cut(s) 243
Psp1406I AACGTT 1 cut(s) 744
Psp6I CCWGG 2 cut(s) 438, 979
PspFI CCCAGC 1 cut(s) 1094
PspGI CCWGG 2 cut(s) 438, 979
PspN4I GGNNCC 2 cut(s) 6, 125
PspPI GGNCC 1 cut(s) 890
PstNI CAGNNNCTG 2 cut(s) 878, 971
PsuI RGATCY 2 cut(s) 365, 700
PvuII CAGCTG 1 cut(s) 422
RsaI GTAC 2 cut(s) 80, 688
RsaNI GTAC 2 cut(s) 79, 687
SaqAI TTAA 4 cut(s) 243, 696, 854, 1326
SatI GCNGC 4 cut(s) 565, 906, 942, 1027
Sau96I GGNCC 1 cut(s) 890
SchI GAGTC 4 cut(s) 232, 674, 822, 1181
ScrFI CCNGG 2 cut(s) 440, 981
SduI GDGCHC 1 cut(s) 99
SfaNI GCATC 4 cut(s) 80, 923, 1044, 1107
SfcI CTRYAG 1 cut(s) 423
SinI GGWCC 1 cut(s) 890
Sse9I AATT 8 cut(s) 249, 345, 382, 451, 619, 691, 708, 1136
SsiI CCGC 1 cut(s) 565
SspMI CTAG 5 cut(s) 237, 324, 669, 1188, 1278
StyD4I CCNGG 2 cut(s) 438, 979
StyI CCWWGG 2 cut(s) 1042, 1166
TaaI ACNGT 6 cut(s) 50, 83, 635, 973, 1057, 1147
TaiI ACGT 5 cut(s) 197, 530, 747, 940, 1253
TaqI TCGA 4 cut(s) 341, 611, 808, 831
TasI AATT 8 cut(s) 249, 345, 382, 451, 619, 691, 708, 1136
TatI WGTACW 1 cut(s) 78
TauI GCSGC 1 cut(s) 567
TfiI GAWTC 4 cut(s) 604, 613, 881, 1015
Tru1I TTAA 4 cut(s) 243, 696, 854, 1326
Tru9I TTAA 4 cut(s) 243, 696, 854, 1326
TscAI CASTG 4 cut(s) 224, 523, 883, 1095
TseFI GTSAC 6 cut(s) 114, 408, 514, 874, 1080, 1360
TseI GCWGC 3 cut(s) 905, 941, 1026
Tsp45I GTSAC 6 cut(s) 114, 408, 514, 874, 1080, 1360
TspDTI ATGAA 3 cut(s) 1001, 1028, 1058
TspRI CASTG 4 cut(s) 224, 523, 883, 1095
VneI GTGCAC 1 cut(s) 95
VpaK11BI GGWCC 1 cut(s) 890
VspI ATTAAT 1 cut(s) 243
XagI CCTNNNNNAGG 1 cut(s) 677
XapI RAATTY 1 cut(s) 345
XceI RCATGY 2 cut(s) 299, 1081
XmiI GTMKAC 1 cut(s) 45
XspI CTAG 5 cut(s) 237, 324, 669, 1188, 1278
ZraI GACGTC 1 cut(s) 195
Zsp2I ATGCAT 1 cut(s) 301
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.