FvH4_6g43570

Zinc finger protein CONSTANS-like

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb6
Physical Location & Seq
Forward (+)
33682838 .. 33686104
3267 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_6g43570.t1

Sequence Viewer

Length: 1335 bp
ATGAGGCCATGTGAGTTATGTTGGCGGGTGAGTGCAATTGTTTACTGCAAATCAGATATGGCTCGCCTTTGCTTGAACTGTGATGGATGTGTACACTCAGCCAATGCCTTAGCGCGGAGGCACGCACGTTGGTTTCTATGTGAAAAGTGCAATGATCAGCCTGCAACAGTACGATGCTTAGATGTGAACGTGTCCTTGTGCCAAAGTTGCGAGTGGAGTCACAATAATGGGGTTACAGGAATGGCGCACCGGAACCAAGCAATAAGTTTCTATACAGGTTGTCCGTCTTTGTCTGAGATTTCTAGAATATGGTCTGCGGTCCTTGAAGGCGGTTCAGCTTCTGGTGGTTTTGGTGGCAGTGGTTGGGAGTCGCTTGGGGGTACCATGGTGTCAAAGAATGAGAAAAATTGCATTAGTAGTTGTAGAGATAGTGAGGCATCTTCGTTTGGAGTAGTGAGTGCAGGCAATAAGTTTAATGAAGTACTAGCAGAGTCTAATTGTACTCCCGATTTTGAGCCTTGGATGGCCACATCTACTGTGATTCCATCAAATCCGAACTGCATCCAGCCACAATGCAAAGATCAAACACCGCTACCATTCTTGCCTCAGGAGTCGAGCCAGCTGCCAAAGCTACAGGGTTCTTCAAATCTTAAAGATCTAGGAATTCAGGATGGCAATGATCTATGTGAAGGTCTCAACATGGATGATGTTCCATTAGACGTTGAAAATGATGATGAGCTATTTAGTTGCTCCCAAGGTCCTTCCAGATACCCGTTTGAGGATGGAGAGTTTGATTGTCTATTAATGGACCAGAAAAATTTATCAGTCACTGAGTCTAATGGTCCTCACTGTGACAATGCTATACAACAGGCTTCACCATCAAGACAACAAGACTGTACCCTGGGATTTCAGTCGTCCTGTGATAGTGTGATGCCGCCTGTGATGAATGCTGGTTTGCTCATGAATCCAAGTTGCAGCAGGAACATCAATCTGGAGGGATTACTTAATCCTACTGGTCAAGTTCATTCAAGTATATCACTATCACTATCCAGCATCACAAGAGATACAACTCATCCAGATTATCAAGATTGCGGATTGTCGCCCGTCTTTCTATCAGCAGAACCTTGGGACTCTACTTTGGAGGCCGGCAGTCCACGAGCAAGGGACAAAGCTAAGATGAGATATGAGGAAAAAAAGAAAACTCGCACGTTCGGTAAACAAATAAGATATGCCTCTAGAAAGGCTAGAGCTGATACCAGAAAACGAGTCAAGGGAAGATTCGTAAAATCCGGTGAAGAATATGATTACGATCCTCTTACGAGAAGGAGCTTCTGA

Protein Analysis

445

Amino Acids

48.83

Weight (kDa)

5.43

Isoelectric Point (pI)

57.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
CCT PF06203 388 - 430 6.3e-17 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 380
AccB1I GGYRCC 1 cut(s) 380
AccII CGCG 1 cut(s) 115
AciI CCGC 7 cut(s) 25, 115, 317, 330, 590, 935, 1092
AclWI GGATC 1 cut(s) 1304
AcoI YGGCCR 1 cut(s) 525
AcsI RAATTY 2 cut(s) 663, 817
AfaI GTAC 6 cut(s) 93, 171, 382, 483, 502, 898
AfiI CCNNNNNNNGG 2 cut(s) 114, 778
AflIII ACRYGT 1 cut(s) 189
AgsI TTSAA 5 cut(s) 76, 326, 645, 725, 1029
AjnI CCWGG 1 cut(s) 900
AluBI AGCT 7 cut(s) 338, 622, 631, 739, 1172, 1250, 1329
AluI AGCT 7 cut(s) 338, 622, 631, 739, 1172, 1250, 1329
Alw26I GTCTC 1 cut(s) 698
AlwI GGATC 1 cut(s) 1304
AlwNI CAGNNNCTG 2 cut(s) 341, 830
AoxI GGCC 3 cut(s) 5, 525, 1143
ApeKI GCWGC 2 cut(s) 622, 975
ApoI RAATTY 2 cut(s) 663, 817
AseI ATTAAT 1 cut(s) 803
Asp718I GGTACC 1 cut(s) 380
AspLEI GCGC 2 cut(s) 115, 247
AspS9I GGNCC 4 cut(s) 319, 758, 808, 842
AsuHPI GGTGA 3 cut(s) 40, 867, 1304
AvaII GGWCC 4 cut(s) 319, 758, 808, 842
AxyI CCTNAGG 1 cut(s) 606
BaeI ACNNNNGTAYC 2 cut(s) 372, 405
BalI TGGCCA 1 cut(s) 527
BanI GGYRCC 1 cut(s) 380
BauI CACGAG 1 cut(s) 1155
BbvI GCAGC 2 cut(s) 609, 987
BccI CCATC 6 cut(s) 77, 517, 553, 665, 776, 886
BcgI CGANNNNNNTGC 2 cut(s) 604, 638
BciT130I CCWGG 1 cut(s) 902
BclI TGATCA 1 cut(s) 154
BcoDI GTCTC 1 cut(s) 698
BfaI CTAG 5 cut(s) 303, 485, 659, 1236, 1245
BfmI CTRYAG 1 cut(s) 632
BglII AGATCT 1 cut(s) 655
BisI GCNGC 3 cut(s) 623, 935, 976
BlsI GCNGC 3 cut(s) 624, 936, 977
BmcAI AGTACT 1 cut(s) 483
Bme1390I CCNGG 1 cut(s) 902
Bme18I GGWCC 4 cut(s) 319, 758, 808, 842
BmgT120I GGNCC 4 cut(s) 319, 758, 808, 842
BmiI GGNNCC 2 cut(s) 254, 382
BmrFI CCNGG 1 cut(s) 902
BmsI GCATC 5 cut(s) 164, 446, 570, 921, 1062
BpmI CTGGAG 1 cut(s) 1013
Bpu10I CCTNAGC 1 cut(s) 109
BsaBI GATNNNNATC 1 cut(s) 1308
BsaI GGTCTC 1 cut(s) 698
BsaJI CCNNGG 6 cut(s) 384, 518, 754, 900, 901, 1124
BsaWI WCCGGW 2 cut(s) 249, 1289
Bsc4I CCNNNNNNNGG 2 cut(s) 114, 778
Bse118I RCCGGY 1 cut(s) 1145
Bse1I ACTGG 1 cut(s) 1018
Bse21I CCTNAGG 1 cut(s) 606
Bse3DI GCAATG 2 cut(s) 157, 682
Bse8I GATNNNNATC 1 cut(s) 1308
BseBI CCWGG 1 cut(s) 902
BseDI CCNNGG 6 cut(s) 384, 518, 754, 900, 901, 1124
BseGI GGATG 7 cut(s) 92, 528, 561, 676, 709, 787, 1072
BseJI GATNNNNATC 1 cut(s) 1308
BseLI CCNNNNNNNGG 2 cut(s) 114, 778
BseMI GCAATG 2 cut(s) 157, 682
BseMII CTCAG 4 cut(s) 111, 285, 620, 822
BseNI ACTGG 1 cut(s) 1018
BseXI GCAGC 2 cut(s) 609, 987
BsgI GTGCAG 1 cut(s) 480
Bsh1236I CGCG 1 cut(s) 115
BshFI GGCC 3 cut(s) 7, 527, 1145
BshNI GGYRCC 1 cut(s) 380
BsiSI CCGG 3 cut(s) 250, 1146, 1290
BslFI GGGAC 2 cut(s) 1142, 1178
BslI CCNNNNNNNGG 2 cut(s) 114, 778
BsmAI GTCTC 1 cut(s) 698
BsmFI GGGAC 2 cut(s) 1142, 1178
BsmI GAATGC 1 cut(s) 952
BsnI GGCC 3 cut(s) 7, 527, 1145
Bso31I GGTCTC 1 cut(s) 698
Bsp1407I TGTACA 1 cut(s) 91
Bsp143I GATC 5 cut(s) 154, 580, 655, 679, 1309
Bsp19I CCATGG 1 cut(s) 384
BspACI CCGC 7 cut(s) 25, 115, 317, 330, 590, 935, 1092
BspANI GGCC 3 cut(s) 7, 527, 1145
BspCNI CTCAG 4 cut(s) 110, 286, 619, 823
BspFNI CGCG 1 cut(s) 115
BspHI TCATGA 1 cut(s) 960
BspLI GGNNCC 2 cut(s) 254, 382
BspPI GGATC 1 cut(s) 1304
BspT107I GGYRCC 1 cut(s) 380
BspTNI GGTCTC 1 cut(s) 698
BsrDI GCAATG 2 cut(s) 157, 682
BsrFI RCCGGY 1 cut(s) 1145
BsrGI TGTACA 1 cut(s) 91
BsrI ACTGG 1 cut(s) 1018
BssAI RCCGGY 1 cut(s) 1145
BssECI CCNNGG 6 cut(s) 384, 518, 754, 900, 901, 1124
BssMI GATC 5 cut(s) 154, 580, 655, 679, 1309
BssSI CACGAG 1 cut(s) 1155
BssT1I CCWWGG 4 cut(s) 384, 518, 754, 1124
Bst2BI CACGAG 1 cut(s) 1155
Bst2UI CCWGG 1 cut(s) 902
Bst4CI ACNGT 5 cut(s) 80, 169, 538, 851, 896
BstAUI TGTACA 1 cut(s) 91
BstC8I GCNNGC 6 cut(s) 64, 123, 162, 463, 620, 1147
BstDEI CTNAG 7 cut(s) 97, 109, 178, 294, 606, 831, 1173
BstDSI CCRYGG 1 cut(s) 384
BstF5I GGATG 7 cut(s) 92, 528, 561, 676, 709, 787, 1072
BstFNI CGCG 1 cut(s) 115
BstHHI GCGC 2 cut(s) 115, 247
BstKTI GATC 5 cut(s) 157, 583, 658, 682, 1312
BstMAI GTCTC 1 cut(s) 698
BstMBI GATC 5 cut(s) 154, 580, 655, 679, 1309
BstMWI GCNNNNNNNGC 2 cut(s) 207, 628
BstNI CCWGG 1 cut(s) 902
BstSCI CCNGG 1 cut(s) 900
BstSFI CTRYAG 1 cut(s) 632
BstUI CGCG 1 cut(s) 115
BstV1I GCAGC 2 cut(s) 609, 987
BstX2I RGATCY 1 cut(s) 655
BstYI RGATCY 1 cut(s) 655
Bsu36I CCTNAGG 1 cut(s) 606
BsuRI GGCC 3 cut(s) 7, 527, 1145
BtgI CCRYGG 1 cut(s) 384
BtsCI GGATG 7 cut(s) 92, 528, 561, 676, 709, 787, 1072
BtsI GCAGTG 1 cut(s) 364
BtsIMutI CAGTG 3 cut(s) 364, 828, 847
Cac8I GCNNGC 6 cut(s) 64, 123, 162, 463, 620, 1147
CaiI CAGNNNCTG 2 cut(s) 341, 830
CciI TCATGA 1 cut(s) 960
CfoI GCGC 2 cut(s) 115, 247
Cfr10I RCCGGY 1 cut(s) 1145
Cfr13I GGNCC 4 cut(s) 319, 758, 808, 842
Csp6I GTAC 6 cut(s) 92, 170, 381, 482, 501, 897
CviAII CATG 4 cut(s) 9, 385, 700, 961
CviQI GTAC 6 cut(s) 92, 170, 381, 482, 501, 897
DdeI CTNAG 7 cut(s) 97, 109, 178, 294, 606, 831, 1173
DpnI GATC 5 cut(s) 156, 582, 657, 681, 1311
DpnII GATC 5 cut(s) 154, 580, 655, 679, 1309
EaeI YGGCCR 1 cut(s) 525
Eco130I CCWWGG 4 cut(s) 384, 518, 754, 1124
Eco31I GGTCTC 1 cut(s) 698
Eco47I GGWCC 4 cut(s) 319, 758, 808, 842
Eco81I CCTNAGG 1 cut(s) 606
EcoO109I RGGNCCY 1 cut(s) 758
EcoRI GAATTC 1 cut(s) 663
EcoRII CCWGG 1 cut(s) 900
EcoT14I CCWWGG 4 cut(s) 384, 518, 754, 1124
ErhI CCWWGG 4 cut(s) 384, 518, 754, 1124
FaeI CATG 4 cut(s) 12, 388, 703, 964
FaqI GGGAC 2 cut(s) 1142, 1178
FatI CATG 4 cut(s) 8, 384, 699, 960
FauI CCCGC 1 cut(s) 18
FbaI TGATCA 1 cut(s) 154
Fnu4HI GCNGC 3 cut(s) 623, 935, 976
FokI GGATG 7 cut(s) 99, 535, 548, 683, 716, 794, 1059
Fsp4HI GCNGC 3 cut(s) 623, 935, 976
FspBI CTAG 5 cut(s) 303, 485, 659, 1236, 1245
GlaI GCGC 2 cut(s) 114, 246
GluI GCNGC 3 cut(s) 623, 935, 976
GsuI CTGGAG 1 cut(s) 1013
HaeIII GGCC 3 cut(s) 7, 527, 1145
HapII CCGG 3 cut(s) 250, 1146, 1290
HhaI GCGC 2 cut(s) 115, 247
Hin1II CATG 4 cut(s) 12, 388, 703, 964
Hin6I GCGC 2 cut(s) 113, 245
HinP1I GCGC 2 cut(s) 113, 245
HpaII CCGG 3 cut(s) 250, 1146, 1290
HphI GGTGA 3 cut(s) 40, 867, 1304
Hpy166II GTNNAC 6 cut(s) 43, 92, 94, 187, 1154, 1217
Hpy188I TCNGA 4 cut(s) 55, 295, 555, 1334
Hpy8I GTNNAC 6 cut(s) 43, 92, 94, 187, 1154, 1217
HpyAV CCTTC 4 cut(s) 320, 683, 771, 1317
HpyCH4III ACNGT 5 cut(s) 80, 169, 538, 851, 896
HpyCH4IV ACGT 4 cut(s) 127, 189, 720, 1208
HpyCH4V TGCA 9 cut(s) 35, 48, 150, 164, 411, 461, 561, 576, 975
HpyF10VI GCNNNNNNNGC 2 cut(s) 207, 628
HpyF3I CTNAG 7 cut(s) 97, 109, 178, 294, 606, 831, 1173
HpySE526I ACGT 4 cut(s) 127, 189, 720, 1208
Hsp92II CATG 4 cut(s) 12, 388, 703, 964
HspAI GCGC 2 cut(s) 113, 245
KpnI GGTACC 1 cut(s) 384
KroI GCCGGC 1 cut(s) 1145
KroNI GCCGGC 1 cut(s) 1147
Ksp22I TGATCA 1 cut(s) 154
Kzo9I GATC 5 cut(s) 154, 580, 655, 679, 1309
LmnI GCTCC 2 cut(s) 755, 1326
Lsp1109I GCAGC 2 cut(s) 609, 987
LweI GCATC 5 cut(s) 164, 446, 570, 921, 1062
MaeI CTAG 5 cut(s) 303, 485, 659, 1236, 1245
MaeII ACGT 4 cut(s) 127, 189, 720, 1208
MaeIII GTNAC 4 cut(s) 218, 232, 826, 851
MalI GATC 5 cut(s) 156, 582, 657, 681, 1311
MboI GATC 5 cut(s) 154, 580, 655, 679, 1309
MboII GAAGA 4 cut(s) 432, 633, 1287, 1307
MfeI CAATTG 1 cut(s) 36
MflI RGATCY 1 cut(s) 655
MlsI TGGCCA 1 cut(s) 527
MluCI AATT 5 cut(s) 36, 406, 496, 663, 817
MluNI TGGCCA 1 cut(s) 527
MlyI GAGTC 7 cut(s) 226, 377, 500, 620, 842, 1124, 1275
Mox20I TGGCCA 1 cut(s) 527
MroNI GCCGGC 1 cut(s) 1145
MscI TGGCCA 1 cut(s) 527
MseI TTAA 4 cut(s) 474, 651, 803, 1005
MslI CAYNNNNRTG 1 cut(s) 225
Msp20I TGGCCA 1 cut(s) 527
MspA1I CMGCKG 1 cut(s) 622
MspI CCGG 3 cut(s) 250, 1146, 1290
MspR9I CCNGG 1 cut(s) 902
MunI CAATTG 1 cut(s) 36
Mva1269I GAATGC 1 cut(s) 952
MvaI CCWGG 1 cut(s) 902
MvnI CGCG 1 cut(s) 115
MwoI GCNNNNNNNGC 2 cut(s) 207, 628
NaeI GCCGGC 1 cut(s) 1147
NcoI CCATGG 1 cut(s) 384
NdeII GATC 5 cut(s) 154, 580, 655, 679, 1309
NgoMIV GCCGGC 1 cut(s) 1145
NlaIII CATG 4 cut(s) 12, 388, 703, 964
NlaIV GGNNCC 2 cut(s) 254, 382
NmuCI GTSAC 3 cut(s) 218, 826, 851
PagI TCATGA 1 cut(s) 960
PasI CCCWGGG 1 cut(s) 901
PctI GAATGC 1 cut(s) 952
PdiI GCCGGC 1 cut(s) 1147
PfeI GAWTC 3 cut(s) 541, 964, 1278
PkrI GCNGC 3 cut(s) 624, 936, 977
PleI GAGTC 7 cut(s) 225, 376, 499, 619, 841, 1124, 1274
PpsI GAGTC 7 cut(s) 225, 376, 499, 619, 841, 1124, 1274
PpuMI RGGWCCY 1 cut(s) 758
PshBI ATTAAT 1 cut(s) 803
Psp5II RGGWCCY 1 cut(s) 758
Psp6I CCWGG 1 cut(s) 900
PspGI CCWGG 1 cut(s) 900
PspN4I GGNNCC 2 cut(s) 254, 382
PspPI GGNCC 4 cut(s) 319, 758, 808, 842
PspPPI RGGWCCY 1 cut(s) 758
PstNI CAGNNNCTG 2 cut(s) 341, 830
PsuI RGATCY 1 cut(s) 655
PvuII CAGCTG 1 cut(s) 622
RsaI GTAC 6 cut(s) 93, 171, 382, 483, 502, 898
RsaNI GTAC 6 cut(s) 92, 170, 381, 482, 501, 897
RseI CAYNNNNRTG 1 cut(s) 225
SaqAI TTAA 4 cut(s) 474, 651, 803, 1005
SatI GCNGC 3 cut(s) 623, 935, 976
Sau3AI GATC 5 cut(s) 154, 580, 655, 679, 1309
Sau96I GGNCC 4 cut(s) 319, 758, 808, 842
ScaI AGTACT 1 cut(s) 483
SchI GAGTC 7 cut(s) 226, 377, 500, 620, 842, 1124, 1275
ScrFI CCNGG 1 cut(s) 902
SfaNI GCATC 5 cut(s) 164, 446, 570, 921, 1062
SfcI CTRYAG 1 cut(s) 632
SinI GGWCC 4 cut(s) 319, 758, 808, 842
SmiMI CAYNNNNRTG 1 cut(s) 225
Sse9I AATT 5 cut(s) 36, 406, 496, 663, 817
SsiI CCGC 7 cut(s) 25, 115, 317, 330, 590, 935, 1092
SspMI CTAG 5 cut(s) 303, 485, 659, 1236, 1245
StyD4I CCNGG 1 cut(s) 900
StyI CCWWGG 4 cut(s) 384, 518, 754, 1124
TaaI ACNGT 5 cut(s) 80, 169, 538, 851, 896
TaiI ACGT 4 cut(s) 130, 192, 723, 1211
TaqI TCGA 1 cut(s) 614
TasI AATT 5 cut(s) 36, 406, 496, 663, 817
TatI WGTACW 3 cut(s) 91, 481, 500
TauI GCSGC 1 cut(s) 937
TfiI GAWTC 3 cut(s) 541, 964, 1278
Tru1I TTAA 4 cut(s) 474, 651, 803, 1005
Tru9I TTAA 4 cut(s) 474, 651, 803, 1005
TscAI CASTG 3 cut(s) 364, 835, 854
TseFI GTSAC 3 cut(s) 218, 826, 851
TseI GCWGC 2 cut(s) 622, 975
Tsp45I GTSAC 3 cut(s) 218, 826, 851
TspDTI ATGAA 4 cut(s) 492, 959, 977, 1013
TspGWI ACGGA 1 cut(s) 273
TspRI CASTG 3 cut(s) 364, 835, 854
VpaK11BI GGWCC 4 cut(s) 319, 758, 808, 842
VspI ATTAAT 1 cut(s) 803
XapI RAATTY 2 cut(s) 663, 817
XbaI TCTAGA 2 cut(s) 302, 1235
XspI CTAG 5 cut(s) 303, 485, 659, 1236, 1245
ZrmI AGTACT 1 cut(s) 483
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.