Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000002

Orthogroup ID

OG0006580

Physical Location & Seq

Genomic Coordinates Reverse (-)

61180313 .. 61182235

Gene Structure 1923 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug02G0481600.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 648 bp

ATGTCAACACCTCCATCCCCATCTCCATCTCATGGTGTGTACCCTCAATCCCCGGATGAGAACGATCCCTATTTATCCAATACTAACGATGACATTTTCAAGGTTAAATTATACGCTTGCTTTGATCGTATCACAGCTCGACATCTCTCACGGAAAACAACGAGATCTCGGCTAAAGTATTTAACTATTGAATTCCAAACAGGTAGCAAGGGTGAAGCACCATATGTTGACTGTTATAGTTTGAACAGACTCCGCCGAGAAATTGTCAAGGGTCTTGTGATTTCTGAAGCTGGCAAGGATGAACTAGAGGATGTGCTAGGGATCACTGATCCACATGAGAACAGTTGTGGAACTACTGGCATATCACTCAAACATCAGGGTTGCTTCCTTTTTTGCCAGGATGGAAGGTTAACCGGTCAGAAACGGGACGGGAAGCTGATGAGAAAAAGGCTGTCGTGTGAGGACCATAAGAAGTACAAGCAAATTAATGCTCATGTTCATGCCTTAAAAGCCGGTGATGATGATGGAGTGAAAGAGATGCTTAAGCAAGTTAAAGCAAATTTGAGGGCACCAGAGAATGAGAAATGGAAATGGTCATCTGGCGTTGCATCTAGTATGGGACGTGATTTTCTAAAGGCTACCACATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0008150 GO:0009889 GO:0009892 GO:0010468 GO:0010556 GO:0010605 GO:0010629 GO:0019219 GO:0019222 GO:0022603 GO:0031323 GO:0031326 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044424 GO:0044464 GO:0048519 GO:0048579 GO:0048580 GO:0048581 GO:0048583 GO:0048585 GO:0048586 GO:0048831 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051171 GO:0051239 GO:0051241 GO:0051252 GO:0060255 GO:0060688 GO:0065007 GO:0080090 GO:0140110 GO:1900618 GO:1903506 GO:1905428 GO:2000026 GO:2000028 GO:2000032 GO:2000112 GO:2000241 GO:2000242 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

CCT zf-B_box

Protein Analysis

215

Amino Acids

24.19

Weight (kDa)

9.05

Isoelectric Point (pI)

44.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0006580)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G21880 AT3G21880 AT3G21880 AT4G15250
fragaria_vesca	FvH4_6g43570
malus_domestica	MD09G1104700.v1.1
prunus_persica	Prupe.3G220900_v2.0.a1
pyrus_communis	pycom09g02770 pycom17g08960 pycom17g08970 pycom17g08990
rosa_chinensis	RchiOBHm_Chr2g0160151
rosa_laevigata	RLG00000021200
rosa_multiflora	Rmu_sc0000403.1_g000012
rosa_roxburghii	Rroxscaffold_2G00090010
rosa_rugosa	Rorug02G0481400.1 Rorug02G0481500.1 Rorug02G0481600 Rorug02G0481700 Rorug02G0481800 Rorug02G0481900
rosa_samantha	Rh2AG547400 Rh2BG560600 Rh2CG531000 Rh2DG569300
rosa_wichuraiana	Rw2G045260

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	568
AccB7I	CCANNNNNTGG	1 cut(s)	32
AciI	CCGC	1 cut(s)	253
AclWI	GGATC	3 cut(s)	59, 323, 329
AcsI	RAATTY	2 cut(s)	191, 559
AcuI	CTGAAG	1 cut(s)	306
AfaI	GTAC	2 cut(s)	41, 476
AfiI	CCNNNNNNNGG	1 cut(s)	32
AflII	CTTAAG	1 cut(s)	542
AgeI	ACCGGT	1 cut(s)	413
AgsI	TTSAA	3 cut(s)	100, 191, 244
AjiI	CACGTC	1 cut(s)	623
AjnI	CCWGG	1 cut(s)	396
AluBI	AGCT	3 cut(s)	137, 290, 436
AluI	AGCT	3 cut(s)	137, 290, 436
AlwI	GGATC	3 cut(s)	59, 323, 329
ApoI	RAATTY	2 cut(s)	191, 559
AseI	ATTAAT	1 cut(s)	486
AsiGI	ACCGGT	1 cut(s)	413
AspS9I	GGNCC	1 cut(s)	463
AsuC2I	CCSGG	1 cut(s)	53
AsuHPI	GGTGA	2 cut(s)	224, 527
AvaII	GGWCC	1 cut(s)	463
BaeGI	GKGCMC	1 cut(s)	571
BanI	GGYRCC	1 cut(s)	568
BccI	CCATC	5 cut(s)	22, 28, 34, 395, 518
BciT130I	CCWGG	1 cut(s)	398
BcnI	CCSGG	1 cut(s)	53
BfaI	CTAG	3 cut(s)	305, 317, 612
BfrI	CTTAAG	1 cut(s)	542
BglII	AGATCT	1 cut(s)	164
Bme1390I	CCNGG	2 cut(s)	53, 398
Bme18I	GGWCC	1 cut(s)	463
BmgBI	CACGTC	1 cut(s)	623
BmgT120I	GGNCC	1 cut(s)	463
BmiI	GGNNCC	1 cut(s)	570
BmrFI	CCNGG	2 cut(s)	53, 398
BmsI	GCATC	2 cut(s)	528, 617
BpuMI	CCSGG	1 cut(s)	53
BsaJI	CCNNGG	1 cut(s)	51
BsaWI	WCCGGW	1 cut(s)	413
Bsc4I	CCNNNNNNNGG	1 cut(s)	32
Bse118I	RCCGGY	2 cut(s)	413, 512
Bse1I	ACTGG	1 cut(s)	361
BseBI	CCWGG	1 cut(s)	398
BseDI	CCNNGG	1 cut(s)	51
BseGI	GGATG	5 cut(s)	14, 61, 304, 316, 406
BseLI	CCNNNNNNNGG	1 cut(s)	32
BseNI	ACTGG	1 cut(s)	361
BseSI	GKGCMC	1 cut(s)	571
BshNI	GGYRCC	1 cut(s)	568
BshTI	ACCGGT	1 cut(s)	413
BsiSI	CCGG	3 cut(s)	53, 414, 513
BslFI	GGGAC	2 cut(s)	440, 633
BslI	CCNNNNNNNGG	1 cut(s)	32
BsmFI	GGGAC	2 cut(s)	440, 633
Bsp1286I	GDGCHC	1 cut(s)	571
Bsp143I	GATC	5 cut(s)	64, 124, 164, 321, 328
BspACI	CCGC	1 cut(s)	253
BspLI	GGNNCC	1 cut(s)	570
BspPI	GGATC	3 cut(s)	59, 323, 329
BspT107I	GGYRCC	1 cut(s)	568
BspTI	CTTAAG	1 cut(s)	542
BsrFI	RCCGGY	2 cut(s)	413, 512
BsrI	ACTGG	1 cut(s)	361
BssAI	RCCGGY	2 cut(s)	413, 512
BssECI	CCNNGG	1 cut(s)	51
BssMI	GATC	5 cut(s)	64, 124, 164, 321, 328
Bst2UI	CCWGG	1 cut(s)	398
Bst4CI	ACNGT	2 cut(s)	233, 344
BstAFI	CTTAAG	1 cut(s)	542
BstC8I	GCNNGC	2 cut(s)	118, 292
BstF5I	GGATG	5 cut(s)	14, 61, 304, 316, 406
BstKTI	GATC	5 cut(s)	67, 127, 167, 324, 331
BstMBI	GATC	5 cut(s)	64, 124, 164, 321, 328
BstMWI	GCNNNNNNNGC	1 cut(s)	509
BstNI	CCWGG	1 cut(s)	398
BstSCI	CCNGG	2 cut(s)	51, 396
BstSLI	GKGCMC	1 cut(s)	571
BstX2I	RGATCY	1 cut(s)	164
BstYI	RGATCY	1 cut(s)	164
BtrI	CACGTC	1 cut(s)	623
BtsCI	GGATG	5 cut(s)	14, 61, 304, 316, 406
BtsIMutI	CAGTG	1 cut(s)	324
Cac8I	GCNNGC	2 cut(s)	118, 292
Cfr10I	RCCGGY	2 cut(s)	413, 512
Cfr13I	GGNCC	1 cut(s)	463
Csp6I	GTAC	2 cut(s)	40, 475
CspAI	ACCGGT	1 cut(s)	413
CviAII	CATG	5 cut(s)	32, 335, 494, 500, 645
CviJI	RGCY	7 cut(s)	137, 172, 290, 436, 451, 512, 638
CviKI_1	RGCY	7 cut(s)	137, 172, 290, 436, 451, 512, 638
CviQI	GTAC	2 cut(s)	40, 475
DpnI	GATC	5 cut(s)	66, 126, 166, 323, 330
DpnII	GATC	5 cut(s)	64, 124, 164, 321, 328
EciI	GGCGGA	1 cut(s)	242
Eco47I	GGWCC	1 cut(s)	463
Eco57I	CTGAAG	1 cut(s)	306
EcoRI	GAATTC	1 cut(s)	191
EcoRII	CCWGG	1 cut(s)	396
FaeI	CATG	5 cut(s)	35, 338, 497, 503, 648
FalI	AAGNNNNNCTT	2 cut(s)	525, 557
FaqI	GGGAC	2 cut(s)	440, 633
FatI	CATG	5 cut(s)	31, 334, 493, 499, 644
FauNDI	CATATG	1 cut(s)	223
FokI	GGATG	4 cut(s)	68, 311, 323, 413
FspBI	CTAG	3 cut(s)	305, 317, 612
HapII	CCGG	3 cut(s)	53, 414, 513
Hin1II	CATG	5 cut(s)	35, 338, 497, 503, 648
HincII	GTYRAC	3 cut(s)	6, 229, 411
HindII	GTYRAC	3 cut(s)	6, 229, 411
HinfI	GANTC	1 cut(s)	249
HpaI	GTTAAC	1 cut(s)	411
HpaII	CCGG	3 cut(s)	53, 414, 513
HphI	GGTGA	2 cut(s)	224, 527
Hpy166II	GTNNAC	4 cut(s)	6, 40, 229, 411
Hpy188I	TCNGA	2 cut(s)	286, 420
Hpy8I	GTNNAC	4 cut(s)	6, 40, 229, 411
HpyAV	CCTTC	1 cut(s)	399
HpyCH4III	ACNGT	2 cut(s)	233, 344
HpyCH4IV	ACGT	1 cut(s)	622
HpyCH4V	TGCA	1 cut(s)	608
HpyF10VI	GCNNNNNNNGC	1 cut(s)	509
HpySE526I	ACGT	1 cut(s)	622
Hsp92II	CATG	5 cut(s)	35, 338, 497, 503, 648
KspAI	GTTAAC	1 cut(s)	411
Kzo9I	GATC	5 cut(s)	64, 124, 164, 321, 328
LweI	GCATC	2 cut(s)	528, 617
MaeI	CTAG	3 cut(s)	305, 317, 612
MaeII	ACGT	1 cut(s)	622
MalI	GATC	5 cut(s)	66, 126, 166, 323, 330
MboI	GATC	5 cut(s)	64, 124, 164, 321, 328
MflI	RGATCY	1 cut(s)	164
MhlI	GDGCHC	1 cut(s)	571
MluCI	AATT	5 cut(s)	107, 191, 261, 483, 559
MlyI	GAGTC	1 cut(s)	243
MnlI	CCTC	5 cut(s)	21, 54, 301, 454, 558
MseI	TTAA	7 cut(s)	105, 182, 410, 486, 506, 543, 552
MslI	CAYNNNNRTG	1 cut(s)	498
MspCI	CTTAAG	1 cut(s)	542
MspI	CCGG	3 cut(s)	53, 414, 513
MspR9I	CCNGG	2 cut(s)	53, 398
MvaI	CCWGG	1 cut(s)	398
MwoI	GCNNNNNNNGC	1 cut(s)	509
NciI	CCSGG	1 cut(s)	53
NdeI	CATATG	1 cut(s)	223
NdeII	GATC	5 cut(s)	64, 124, 164, 321, 328
NlaIII	CATG	5 cut(s)	35, 338, 497, 503, 648
NlaIV	GGNNCC	1 cut(s)	570
NmeAIII	GCCGAG	2 cut(s)	148, 281
PflMI	CCANNNNNTGG	1 cut(s)	32
PinAI	ACCGGT	1 cut(s)	413
PleI	GAGTC	1 cut(s)	243
PpsI	GAGTC	1 cut(s)	243
PshBI	ATTAAT	1 cut(s)	486
Psp6I	CCWGG	1 cut(s)	396
PspGI	CCWGG	1 cut(s)	396
PspN4I	GGNNCC	1 cut(s)	570
PspPI	GGNCC	1 cut(s)	463
PsuI	RGATCY	1 cut(s)	164
RsaI	GTAC	2 cut(s)	41, 476
RsaNI	GTAC	2 cut(s)	40, 475
RseI	CAYNNNNRTG	1 cut(s)	498
SaqAI	TTAA	7 cut(s)	105, 182, 410, 486, 506, 543, 552
Sau3AI	GATC	5 cut(s)	64, 124, 164, 321, 328
Sau96I	GGNCC	1 cut(s)	463
SchI	GAGTC	1 cut(s)	243
ScrFI	CCNGG	2 cut(s)	53, 398
SduI	GDGCHC	1 cut(s)	571
SetI	ASST	8 cut(s)	13, 105, 139, 205, 292, 410, 438, 625
SfaNI	GCATC	2 cut(s)	528, 617
SinI	GGWCC	1 cut(s)	463
SmiMI	CAYNNNNRTG	1 cut(s)	498
SmlI	CTYRAG	1 cut(s)	542
SmoI	CTYRAG	1 cut(s)	542
Sse9I	AATT	5 cut(s)	107, 191, 261, 483, 559
SsiI	CCGC	1 cut(s)	253
SspMI	CTAG	3 cut(s)	305, 317, 612
StyD4I	CCNGG	2 cut(s)	51, 396
TaaI	ACNGT	2 cut(s)	233, 344
TaiI	ACGT	1 cut(s)	625
TaqI	TCGA	1 cut(s)	139
TasI	AATT	5 cut(s)	107, 191, 261, 483, 559
TatI	WGTACW	1 cut(s)	474
Tru1I	TTAA	7 cut(s)	105, 182, 410, 486, 506, 543, 552
Tru9I	TTAA	7 cut(s)	105, 182, 410, 486, 506, 543, 552
TscAI	CASTG	1 cut(s)	331
TspDTI	ATGAA	2 cut(s)	315, 488
TspGWI	ACGGA	1 cut(s)	166
TspRI	CASTG	1 cut(s)	331
Van91I	CCANNNNNTGG	1 cut(s)	32
Vha464I	CTTAAG	1 cut(s)	542
VpaK11BI	GGWCC	1 cut(s)	463
VspI	ATTAAT	1 cut(s)	486
XapI	RAATTY	2 cut(s)	191, 559
XspI	CTAG	3 cut(s)	305, 317, 612

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.