Rw2G045260

Zinc finger protein CONSTANS-like

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr2
Physical Location & Seq
Forward (+)
72199627 .. 72201377
1751 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw2G045260.1

Sequence Viewer

Length: 1353 bp
ATGAGGCCATGTGAATTATGTTGGCGGGCGAGTGCACTTATTTACTGCAGAGCAGATATGGCTCGCCTTTGCTTAAACTGTGATGGATCTGTACACTCAGCCAATGCGTTAGCGCGAAGGCACTCACGTTGGTTTCTATGTGATAAGTGCAATGATCAGCCTGCAACAGTTCGATGCCTGGATGAGAACATGTCCTTGTGCCAAAGTTGTGAGTGGAATCACAATAATGGGGTTACAGGAATGGGGCACCGTAACCAAGCAATAAGTTGCTATACGGGCTGTCCGTCGTTGTCTGAGATTTCGAGAATTTGGTCTGCGGTCCTTGAAGGGGGTTCAGCTTCTGGTGGTTTTGGTGGCAGTGCTTGGGAGTCACTTGGGGGTTCGGTGATGCCAAAGAATGAGAATAATTGCATTAGTAACTGTTTGGAGCGTAGAGATAGTGACGCATCTTCGTTTGGGGTAGTGAGTGCTGGCAAGTTGAATGAAGTACTAGCAGAGTCTAATTGTACTCCCAAGTTTGAGCCGTGGATGGCCCCATCTGCTATGATTCCATCAAATCCGAACTGCATCCAGCCACAATGCAAAGATCAAGCACCATTCTTGCCTCAGGAGTCGAGCCAGATGCCAAAGGGTTCTTCAAATTTTAAAGATCTAGGAATTCAGGATGGCAATGATCTATGTGAAGGTCTCAACATGGATGATGTTCCACTAGACGTTGAAAATGACGATGAGCTATTTAGCTGCTCACAAGGTCCTTCCAGATACTCCTTTGAGGATGGAGAGTTGGACTGTCTATTAATGGACCAGAAAAACTTATCAGTCACCGAGTCTAATGGTCCTCACAGTGACAATGCTATACAACAGGCATCACCATCAAGACAACAAGAGTGTACCGTGGGATTTCACTCATCCTGTGTGTCAGATAGTGTGATGCCCCCAGTGATGAATGCTGGTAGCACTGTAAACTGCAGCCTGCTCATGAATCCTAGTTGCAGCAGAAACATCAATCTGGAGGGATTAATTAATCCTACTGGTCAAGTTCATTCAAGCATATCTCTATCACTATCCAGCATCACAAGAGATACAACTCATCCAGATTATCAAGATTGCGGACTGTCACCCGTCTTTCTATCAGCAGAACCTTGGGACTCTACTTTGGAGACCAGCAGTCCACGAGCAAGGGACAAAGCTAAGATGAGATATGAGGAAAAAAAAAAAACTCGCACGTTTGGTAAACAAATAAGGTATGCCTCTAGAAAGGCTAGAGCTGATACCAGAAAACGAGTCAAGGGAAGATTCGTAAAATCCGGTGAAGAATATGATTACGATCCTCTTGTGAGAAGGAGCTTCTGA

Protein Analysis

450

Amino Acids

49.47

Weight (kDa)

5.51

Isoelectric Point (pI)

57.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
ANCHR-like_BBOX PF22586 46 - 83 2.1e-06 ANCHR-like B-box zinc-binding domain
CCT PF06203 394 - 436 6.4e-17 CCT motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 246
AccII CGCG 1 cut(s) 115
AciI CCGC 3 cut(s) 25, 317, 1110
AclWI GGATC 2 cut(s) 94, 1322
AcsI RAATTY 3 cut(s) 306, 640, 657
AfaI GTAC 4 cut(s) 93, 489, 508, 892
AfiI CCNNNNNNNGG 1 cut(s) 328
AflIII ACRYGT 1 cut(s) 189
AgsI TTSAA 5 cut(s) 326, 481, 639, 719, 1047
AhdI GACNNNNNGTC 1 cut(s) 1167
AjnI CCWGG 1 cut(s) 177
AjuI GAANNNNNNNTTGG 2 cut(s) 619, 651
AluBI AGCT 6 cut(s) 338, 733, 741, 1190, 1268, 1347
AluI AGCT 6 cut(s) 338, 733, 741, 1190, 1268, 1347
Alw21I GWGCWC 1 cut(s) 37
Alw26I GTCTC 2 cut(s) 692, 1154
Alw44I GTGCAC 1 cut(s) 33
AlwI GGATC 2 cut(s) 94, 1322
AlwNI CAGNNNCTG 1 cut(s) 341
AoxI GGCC 2 cut(s) 5, 531
ApaLI GTGCAC 1 cut(s) 33
ApeKI GCWGC 3 cut(s) 741, 969, 993
ApoI RAATTY 3 cut(s) 306, 640, 657
AseI ATTAAT 3 cut(s) 797, 1019, 1023
AspLEI GCGC 1 cut(s) 115
AspS9I GGNCC 5 cut(s) 319, 532, 752, 802, 836
AsuHPI GGTGA 5 cut(s) 397, 814, 861, 1110, 1322
AvaII GGWCC 4 cut(s) 319, 752, 802, 836
AxyI CCTNAGG 1 cut(s) 606
BaeGI GKGCMC 2 cut(s) 37, 249
BanI GGYRCC 1 cut(s) 246
BauI CACGAG 1 cut(s) 1173
Bbv12I GWGCWC 1 cut(s) 37
BbvI GCAGC 3 cut(s) 728, 981, 1005
BccI CCATC 7 cut(s) 77, 523, 544, 559, 659, 770, 880
BceAI ACGGC 1 cut(s) 508
BcgI CGANNNNNNTGC 2 cut(s) 604, 638
BciT130I CCWGG 1 cut(s) 179
BclI TGATCA 1 cut(s) 154
BcoDI GTCTC 2 cut(s) 692, 1154
BfaI CTAG 6 cut(s) 491, 653, 710, 987, 1254, 1263
BfmI CTRYAG 2 cut(s) 46, 967
BglII AGATCT 1 cut(s) 649
BisI GCNGC 3 cut(s) 742, 970, 994
BlsI GCNGC 3 cut(s) 743, 971, 995
BmcAI AGTACT 1 cut(s) 489
Bme1390I CCNGG 1 cut(s) 179
Bme18I GGWCC 4 cut(s) 319, 752, 802, 836
BmeRI GACNNNNNGTC 1 cut(s) 1167
BmgT120I GGNCC 5 cut(s) 319, 532, 752, 802, 836
BmiI GGNNCC 2 cut(s) 248, 534
BmrFI CCNGG 1 cut(s) 179
BmrI ACTGGG 1 cut(s) 932
BmsI GCATC 8 cut(s) 164, 378, 455, 576, 612, 875, 921, 1080
BmuI ACTGGG 1 cut(s) 932
BpmI CTGGAG 1 cut(s) 1031
BsaBI GATNNNNATC 1 cut(s) 1326
BsaI GGTCTC 2 cut(s) 692, 1154
BsaJI CCNNGG 3 cut(s) 524, 894, 1142
BsaWI WCCGGW 1 cut(s) 1307
Bsc4I CCNNNNNNNGG 1 cut(s) 328
Bse1I ACTGG 2 cut(s) 938, 1036
Bse21I CCTNAGG 1 cut(s) 606
Bse3DI GCAATG 2 cut(s) 157, 676
Bse8I GATNNNNATC 1 cut(s) 1326
BseBI CCWGG 1 cut(s) 179
BseDI CCNNGG 3 cut(s) 524, 894, 1142
BseGI GGATG 8 cut(s) 187, 534, 567, 670, 703, 781, 908, 1090
BseJI GATNNNNATC 1 cut(s) 1326
BseLI CCNNNNNNNGG 1 cut(s) 328
BseMI GCAATG 2 cut(s) 157, 676
BseMII CTCAG 3 cut(s) 111, 285, 620
BseNI ACTGG 2 cut(s) 938, 1036
BseSI GKGCMC 2 cut(s) 37, 249
BseXI GCAGC 3 cut(s) 728, 981, 1005
Bsh1236I CGCG 1 cut(s) 115
BshFI GGCC 2 cut(s) 7, 533
BshNI GGYRCC 1 cut(s) 246
BsiHKAI GWGCWC 1 cut(s) 37
BsiSI CCGG 1 cut(s) 1308
BslFI GGGAC 2 cut(s) 1160, 1196
BslI CCNNNNNNNGG 1 cut(s) 328
BsmAI GTCTC 2 cut(s) 692, 1154
BsmFI GGGAC 2 cut(s) 1160, 1196
BsmI GAATGC 1 cut(s) 952
BsnI GGCC 2 cut(s) 7, 533
Bso31I GGTCTC 2 cut(s) 692, 1154
Bsp1286I GDGCHC 2 cut(s) 37, 249
Bsp1407I TGTACA 1 cut(s) 91
Bsp143I GATC 6 cut(s) 86, 154, 586, 649, 673, 1327
BspACI CCGC 3 cut(s) 25, 317, 1110
BspANI GGCC 2 cut(s) 7, 533
BspCNI CTCAG 3 cut(s) 110, 286, 619
BspFNI CGCG 1 cut(s) 115
BspHI TCATGA 1 cut(s) 978
BspLI GGNNCC 2 cut(s) 248, 534
BspMAI CTGCAG 2 cut(s) 50, 971
BspPI GGATC 2 cut(s) 94, 1322
BspT107I GGYRCC 1 cut(s) 246
BspTNI GGTCTC 2 cut(s) 692, 1154
BsrDI GCAATG 2 cut(s) 157, 676
BsrGI TGTACA 1 cut(s) 91
BsrI ACTGG 2 cut(s) 938, 1036
BssECI CCNNGG 3 cut(s) 524, 894, 1142
BssMI GATC 6 cut(s) 86, 154, 586, 649, 673, 1327
BssSI CACGAG 1 cut(s) 1173
BssT1I CCWWGG 1 cut(s) 1142
Bst2BI CACGAG 1 cut(s) 1173
Bst2UI CCWGG 1 cut(s) 179
Bst4CI ACNGT 9 cut(s) 80, 169, 251, 422, 791, 845, 895, 961, 1116
BstAUI TGTACA 1 cut(s) 91
BstC8I GCNNGC 5 cut(s) 27, 64, 162, 472, 974
BstDEI CTNAG 4 cut(s) 97, 294, 606, 1191
BstDSI CCRYGG 2 cut(s) 524, 894
BstF5I GGATG 8 cut(s) 187, 534, 567, 670, 703, 781, 908, 1090
BstFNI CGCG 1 cut(s) 115
BstHHI GCGC 1 cut(s) 115
BstKTI GATC 6 cut(s) 89, 157, 589, 652, 676, 1330
BstMAI GTCTC 2 cut(s) 692, 1154
BstMBI GATC 6 cut(s) 86, 154, 586, 649, 673, 1327
BstMWI GCNNNNNNNGC 3 cut(s) 59, 276, 539
BstNI CCWGG 1 cut(s) 179
BstNSI RCATGY 1 cut(s) 193
BstSCI CCNGG 1 cut(s) 177
BstSFI CTRYAG 2 cut(s) 46, 967
BstSLI GKGCMC 2 cut(s) 37, 249
BstUI CGCG 1 cut(s) 115
BstV1I GCAGC 3 cut(s) 728, 981, 1005
BstX2I RGATCY 2 cut(s) 86, 649
BstYI RGATCY 2 cut(s) 86, 649
Bsu36I CCTNAGG 1 cut(s) 606
BsuRI GGCC 2 cut(s) 7, 533
BtgI CCRYGG 2 cut(s) 524, 894
BtsCI GGATG 8 cut(s) 187, 534, 567, 670, 703, 781, 908, 1090
BtsI GCAGTG 1 cut(s) 364
BtsIMutI CAGTG 4 cut(s) 364, 850, 945, 957
Cac8I GCNNGC 5 cut(s) 27, 64, 162, 472, 974
CaiI CAGNNNCTG 1 cut(s) 341
CciI TCATGA 1 cut(s) 978
CfoI GCGC 1 cut(s) 115
Cfr13I GGNCC 5 cut(s) 319, 532, 752, 802, 836
CseI GACGC 1 cut(s) 452
Csp6I GTAC 4 cut(s) 92, 488, 507, 891
CviAII CATG 4 cut(s) 9, 190, 694, 979
CviQI GTAC 4 cut(s) 92, 488, 507, 891
DdeI CTNAG 4 cut(s) 97, 294, 606, 1191
DpnI GATC 6 cut(s) 88, 156, 588, 651, 675, 1329
DpnII GATC 6 cut(s) 86, 154, 586, 649, 673, 1327
DraI TTTAAA 1 cut(s) 646
DriI GACNNNNNGTC 1 cut(s) 1167
Eam1105I GACNNNNNGTC 1 cut(s) 1167
Eco130I CCWWGG 1 cut(s) 1142
Eco31I GGTCTC 2 cut(s) 692, 1154
Eco47I GGWCC 4 cut(s) 319, 752, 802, 836
Eco81I CCTNAGG 1 cut(s) 606
EcoO109I RGGNCCY 1 cut(s) 752
EcoRI GAATTC 1 cut(s) 657
EcoRII CCWGG 1 cut(s) 177
EcoT14I CCWWGG 1 cut(s) 1142
ErhI CCWWGG 1 cut(s) 1142
FaeI CATG 4 cut(s) 12, 193, 697, 982
FaqI GGGAC 2 cut(s) 1160, 1196
FatI CATG 4 cut(s) 8, 189, 693, 978
FauI CCCGC 1 cut(s) 18
FbaI TGATCA 1 cut(s) 154
Fnu4HI GCNGC 3 cut(s) 742, 970, 994
FokI GGATG 8 cut(s) 194, 541, 554, 677, 710, 788, 895, 1077
Fsp4HI GCNGC 3 cut(s) 742, 970, 994
FspBI CTAG 6 cut(s) 491, 653, 710, 987, 1254, 1263
GlaI GCGC 1 cut(s) 114
GluI GCNGC 3 cut(s) 742, 970, 994
GsuI CTGGAG 1 cut(s) 1031
HaeIII GGCC 2 cut(s) 7, 533
HapII CCGG 1 cut(s) 1308
HgaI GACGC 1 cut(s) 452
HhaI GCGC 1 cut(s) 115
Hin1II CATG 4 cut(s) 12, 193, 697, 982
Hin6I GCGC 1 cut(s) 113
HinP1I GCGC 1 cut(s) 113
HpaII CCGG 1 cut(s) 1308
HphI GGTGA 5 cut(s) 397, 814, 861, 1110, 1322
Hpy166II GTNNAC 6 cut(s) 35, 94, 891, 964, 1172, 1235
Hpy188I TCNGA 4 cut(s) 295, 561, 922, 1352
Hpy8I GTNNAC 6 cut(s) 35, 94, 891, 964, 1172, 1235
Hpy99I CGWCG 1 cut(s) 289
HpyAV CCTTC 5 cut(s) 111, 320, 677, 765, 1335
HpyCH4III ACNGT 9 cut(s) 80, 169, 251, 422, 791, 845, 895, 961, 1116
HpyCH4IV ACGT 3 cut(s) 127, 714, 1226
HpyCH4V TGCA 9 cut(s) 35, 48, 150, 164, 411, 567, 582, 969, 993
HpyF10VI GCNNNNNNNGC 3 cut(s) 59, 276, 539
HpyF3I CTNAG 4 cut(s) 97, 294, 606, 1191
HpySE526I ACGT 3 cut(s) 127, 714, 1226
Hsp92II CATG 4 cut(s) 12, 193, 697, 982
HspAI GCGC 1 cut(s) 113
Ksp22I TGATCA 1 cut(s) 154
Kzo9I GATC 6 cut(s) 86, 154, 586, 649, 673, 1327
LmnI GCTCC 2 cut(s) 427, 1344
Lsp1109I GCAGC 3 cut(s) 728, 981, 1005
LweI GCATC 8 cut(s) 164, 378, 455, 576, 612, 875, 921, 1080
MaeI CTAG 6 cut(s) 491, 653, 710, 987, 1254, 1263
MaeII ACGT 3 cut(s) 127, 714, 1226
MaeIII GTNAC 8 cut(s) 232, 251, 369, 416, 440, 820, 845, 1116
MalI GATC 6 cut(s) 88, 156, 588, 651, 675, 1329
MboI GATC 6 cut(s) 86, 154, 586, 649, 673, 1327
MboII GAAGA 4 cut(s) 441, 627, 1305, 1325
MflI RGATCY 2 cut(s) 86, 649
MhlI GDGCHC 2 cut(s) 37, 249
MluCI AATT 7 cut(s) 14, 306, 406, 502, 640, 657, 1020
MlyI GAGTC 6 cut(s) 377, 506, 620, 836, 1142, 1293
MmeI TCCRAC 1 cut(s) 765
MnlI CCTC 7 cut(s) 615, 766, 849, 1006, 1198, 1261, 1341
MseI TTAA 5 cut(s) 74, 645, 797, 1019, 1023
MslI CAYNNNNRTG 1 cut(s) 225
MspI CCGG 1 cut(s) 1308
MspR9I CCNGG 1 cut(s) 179
Mva1269I GAATGC 1 cut(s) 952
MvaI CCWGG 1 cut(s) 179
MvnI CGCG 1 cut(s) 115
MwoI GCNNNNNNNGC 3 cut(s) 59, 276, 539
NdeII GATC 6 cut(s) 86, 154, 586, 649, 673, 1327
NlaIII CATG 4 cut(s) 12, 193, 697, 982
NlaIV GGNNCC 2 cut(s) 248, 534
NmuCI GTSAC 5 cut(s) 369, 440, 820, 845, 1116
NspI RCATGY 1 cut(s) 193
PacI TTAATTAA 1 cut(s) 1023
PagI TCATGA 1 cut(s) 978
PciI ACATGT 1 cut(s) 189
PcsI WCGNNNNNNNCGW 1 cut(s) 281
PctI GAATGC 1 cut(s) 952
PfeI GAWTC 4 cut(s) 217, 547, 982, 1296
PkrI GCNGC 3 cut(s) 743, 971, 995
PleI GAGTC 6 cut(s) 376, 505, 619, 835, 1142, 1292
PpsI GAGTC 6 cut(s) 376, 505, 619, 835, 1142, 1292
PpuMI RGGWCCY 1 cut(s) 752
PscI ACATGT 1 cut(s) 189
PshBI ATTAAT 3 cut(s) 797, 1019, 1023
Psp5II RGGWCCY 1 cut(s) 752
Psp6I CCWGG 1 cut(s) 177
PspGI CCWGG 1 cut(s) 177
PspN4I GGNNCC 2 cut(s) 248, 534
PspPI GGNCC 5 cut(s) 319, 532, 752, 802, 836
PspPPI RGGWCCY 1 cut(s) 752
PstI CTGCAG 2 cut(s) 50, 971
PstNI CAGNNNCTG 1 cut(s) 341
PsuI RGATCY 2 cut(s) 86, 649
RsaI GTAC 4 cut(s) 93, 489, 508, 892
RsaNI GTAC 4 cut(s) 92, 488, 507, 891
RseI CAYNNNNRTG 1 cut(s) 225
SaqAI TTAA 5 cut(s) 74, 645, 797, 1019, 1023
SatI GCNGC 3 cut(s) 742, 970, 994
Sau3AI GATC 6 cut(s) 86, 154, 586, 649, 673, 1327
Sau96I GGNCC 5 cut(s) 319, 532, 752, 802, 836
ScaI AGTACT 1 cut(s) 489
SchI GAGTC 6 cut(s) 377, 506, 620, 836, 1142, 1293
ScrFI CCNGG 1 cut(s) 179
SduI GDGCHC 2 cut(s) 37, 249
SfaNI GCATC 8 cut(s) 164, 378, 455, 576, 612, 875, 921, 1080
SfcI CTRYAG 2 cut(s) 46, 967
SinI GGWCC 4 cut(s) 319, 752, 802, 836
SmiMI CAYNNNNRTG 1 cut(s) 225
Sse9I AATT 7 cut(s) 14, 306, 406, 502, 640, 657, 1020
SsiI CCGC 3 cut(s) 25, 317, 1110
SspMI CTAG 6 cut(s) 491, 653, 710, 987, 1254, 1263
StyD4I CCNGG 1 cut(s) 177
StyI CCWWGG 1 cut(s) 1142
TaaI ACNGT 9 cut(s) 80, 169, 251, 422, 791, 845, 895, 961, 1116
TaiI ACGT 3 cut(s) 130, 717, 1229
TaqI TCGA 3 cut(s) 172, 302, 614
TasI AATT 7 cut(s) 14, 306, 406, 502, 640, 657, 1020
TatI WGTACW 3 cut(s) 91, 487, 506
TfiI GAWTC 4 cut(s) 217, 547, 982, 1296
Tru1I TTAA 5 cut(s) 74, 645, 797, 1019, 1023
Tru9I TTAA 5 cut(s) 74, 645, 797, 1019, 1023
TscAI CASTG 4 cut(s) 364, 850, 945, 964
TseFI GTSAC 5 cut(s) 369, 440, 820, 845, 1116
TseI GCWGC 3 cut(s) 741, 969, 993
Tsp45I GTSAC 5 cut(s) 369, 440, 820, 845, 1116
TspDTI ATGAA 4 cut(s) 498, 959, 995, 1031
TspGWI ACGGA 1 cut(s) 273
TspRI CASTG 4 cut(s) 364, 850, 945, 964
VneI GTGCAC 1 cut(s) 33
VpaK11BI GGWCC 4 cut(s) 319, 752, 802, 836
VspI ATTAAT 3 cut(s) 797, 1019, 1023
XapI RAATTY 3 cut(s) 306, 640, 657
XbaI TCTAGA 1 cut(s) 1253
XceI RCATGY 1 cut(s) 193
XspI CTAG 6 cut(s) 491, 653, 710, 987, 1254, 1263
ZrmI AGTACT 1 cut(s) 489
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.