Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008334

Physical Location & Seq

Genomic Coordinates Reverse (-)

7792549 .. 7794262

Gene Structure 1714 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G22110.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGTCTCGGAGATATGATAGCCGTACCACAATCTTCTCGCCAGAAGGTCGTCTTTACCAGGTAGAGTATGCTATGGAGGCCATTGGAAACGCCGGTTCTGCGATTGGAATCTTATCCAAAGACGGTGTTGTGTTGATCGGTGAGAAGAAAGTCACCTCAAAGCTTCTTCAAACCTCAACCTCTGCTGAGAAAATGTACAAGATTGATGACCATGTTGCCTGTGCTGTTGCTGGTATAATGTCTGATGCTAACATACTTATCAACACGGCTCGAGTTCAAGCTCAACGTTACACCTTCATGTACCAAGAGCCCATGCCGGTTGAGCAGCTGGTTCAATCTCTTTGTGACACAAAACAAGGATACACACAGTTTGGTGGTCTTCGCCCGTTTGGTGTCTCCTTTCTCTTTGCAGGATGGGACAAGCACCATGGTTTCCAGCTTTATATGAGTGACCCGAGTGGGAACTATGGTGGTTGGAAAGCTGCAGCTGTTGGAGCAAACAATCAGGCGGCTCAGTCTATCCTGAAACAAGACTACAAGGACGATGCAACCAGGGAAGAAGCAGTCGAGCTTGCCTTGAAGGTTCTGACCAAGACAATGGACAGCACTAGCTTAACATCTGAGAAGCTAGAGCTTGCTGAAGTGTATCTGACTCCATCCAAGACTGTTAAGTACCATGTTCACTCACCTGAGTCGCTCACCAAACTGTTGGTCAAGCACGGTGTGACTCAACCCGCTGCTGAAACATCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005839 GO:0005840 GO:0008150 GO:0010035 GO:0010038 GO:0019773 GO:0022626 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046686 GO:0050896 GO:1902494 GO:1905368 GO:1905369 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

250

Amino Acids

27.47

Weight (kDa)

6.6

Isoelectric Point (pI)

50.33

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome_A_N	PF10584	5 - 27	2.4e-13	Proteasome subunit A N-terminal signature
Proteasome	PF00227	30 - 214	6.4e-59	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0008334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22110 AT4G15165
fragaria_vesca	FvH4_3g13020
malus_domestica	MD05G1246200.v1.1 MD09G1143900.v1.1 MD10G1227000.v1.1
prunus_persica	Prupe.3G183900_v2.0.a1 Prupe.4G118100_v2.0.a1
pyrus_communis	pycom09g06330 pycom17g12310
rosa_chinensis	RchiOBHm_Chr5g0021211
rosa_laevigata	RLG00000032595
rosa_multiflora	Rmu_co8270601.1_g000001 Rmu_sc0002467.1_g000016 Rmu_sc0003392.1_g000019 Rmu_sc0019507.1_g000001 Rmu_sc0039744.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057290
rosa_rugosa	Rorug05G0065200
rosa_samantha	Rh5AG154100 Rh5CG167400 Rh5DG154200
rosa_wichuraiana	Rw5G013740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	509, 735
AclI	AACGTT	1 cut(s)	286
AcuI	CTGAAG	1 cut(s)	660
AdeI	CACNNNGTG	1 cut(s)	724
AfaI	GTAC	4 cut(s)	25, 197, 302, 674
AgsI	TTSAA	4 cut(s)	170, 278, 335, 580
AjnI	CCWGG	2 cut(s)	57, 551
Alw26I	GTCTC	2 cut(s)	9, 400
Ama87I	CYCGRG	2 cut(s)	270, 454
AoxI	GGCC	1 cut(s)	78
ApeKI	GCWGC	4 cut(s)	325, 482, 485, 737
ArsI	GACNNNNNNTTYG	2 cut(s)	696, 728
AsuHPI	GGTGA	4 cut(s)	145, 152, 678, 691
AvaI	CYCGRG	2 cut(s)	270, 454
BanII	GRGCYC	1 cut(s)	312
BbsI	GAAGAC	1 cut(s)	371
BbvI	GCAGC	4 cut(s)	337, 469, 497, 724
BccI	CCATC	2 cut(s)	408, 664
BceAI	ACGGC	2 cut(s)	6, 282
BciT130I	CCWGG	2 cut(s)	59, 553
BciVI	GTATCC	1 cut(s)	353
BcoDI	GTCTC	2 cut(s)	9, 400
BfaI	CTAG	2 cut(s)	609, 629
BfmI	CTRYAG	1 cut(s)	483
BfuI	GTATCC	1 cut(s)	353
BisI	GCNGC	5 cut(s)	326, 483, 486, 510, 738
BlsI	GCNGC	5 cut(s)	327, 484, 487, 511, 739
Bme1390I	CCNGG	2 cut(s)	59, 553
BmeT110I	CYCGRG	2 cut(s)	270, 454
BmrFI	CCNGG	2 cut(s)	59, 553
BmsI	GCATC	2 cut(s)	235, 535
BpiI	GAAGAC	1 cut(s)	371
BsaBI	GATNNNNATC	1 cut(s)	107
BsaJI	CCNNGG	2 cut(s)	427, 552
Bse118I	RCCGGY	2 cut(s)	92, 316
Bse8I	GATNNNNATC	1 cut(s)	107
BseBI	CCWGG	2 cut(s)	59, 553
BseDI	CCNNGG	2 cut(s)	427, 552
BseGI	GGATG	2 cut(s)	419, 656
BseJI	GATNNNNATC	1 cut(s)	107
BseMII	CTCAG	4 cut(s)	177, 527, 612, 681
BseXI	GCAGC	4 cut(s)	337, 469, 497, 724
BshFI	GGCC	1 cut(s)	80
BsiHKCI	CYCGRG	2 cut(s)	270, 454
BsiSI	CCGG	2 cut(s)	93, 317
BslFI	GGGAC	1 cut(s)	431
BsmAI	GTCTC	2 cut(s)	9, 400
BsmFI	GGGAC	1 cut(s)	431
BsnI	GGCC	1 cut(s)	80
BsoBI	CYCGRG	2 cut(s)	270, 454
Bsp1286I	GDGCHC	1 cut(s)	312
Bsp1407I	TGTACA	1 cut(s)	195
Bsp143I	GATC	1 cut(s)	135
Bsp19I	CCATGG	1 cut(s)	427
BspACI	CCGC	2 cut(s)	509, 735
BspANI	GGCC	1 cut(s)	80
BspCNI	CTCAG	4 cut(s)	178, 526, 613, 682
BspMAI	CTGCAG	1 cut(s)	487
BsrFI	RCCGGY	2 cut(s)	92, 316
BsrGI	TGTACA	1 cut(s)	195
BssAI	RCCGGY	2 cut(s)	92, 316
BssECI	CCNNGG	2 cut(s)	427, 552
BssMI	GATC	1 cut(s)	135
BssT1I	CCWWGG	1 cut(s)	427
Bst2UI	CCWGG	2 cut(s)	59, 553
Bst4CI	ACNGT	5 cut(s)	125, 369, 667, 708, 722
BstAUI	TGTACA	1 cut(s)	195
BstC8I	GCNNGC	2 cut(s)	573, 636
BstDEI	CTNAG	4 cut(s)	186, 513, 621, 690
BstDSI	CCRYGG	1 cut(s)	427
BstF5I	GGATG	2 cut(s)	419, 656
BstKTI	GATC	1 cut(s)	138
BstMAI	GTCTC	2 cut(s)	9, 400
BstMBI	GATC	1 cut(s)	135
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 98, 322, 494
BstNI	CCWGG	2 cut(s)	59, 553
BstSCI	CCNGG	2 cut(s)	57, 551
BstSFI	CTRYAG	1 cut(s)	483
BstV1I	GCAGC	4 cut(s)	337, 469, 497, 724
BstV2I	GAAGAC	1 cut(s)	371
BstXI	CCANNNNNNTGG	2 cut(s)	598, 709
BsuI	GTATCC	1 cut(s)	353
BsuRI	GGCC	1 cut(s)	80
BtgI	CCRYGG	1 cut(s)	427
BtsCI	GGATG	2 cut(s)	419, 656
Cac8I	GCNNGC	2 cut(s)	573, 636
Cfr10I	RCCGGY	2 cut(s)	92, 316
CsiI	ACCWGGT	1 cut(s)	57
Csp6I	GTAC	4 cut(s)	24, 196, 301, 673
CviAII	CATG	5 cut(s)	212, 298, 313, 428, 677
CviQI	GTAC	4 cut(s)	24, 196, 301, 673
DdeI	CTNAG	4 cut(s)	186, 513, 621, 690
DpnI	GATC	1 cut(s)	137
DpnII	GATC	1 cut(s)	135
DraIII	CACNNNGTG	1 cut(s)	724
Eco130I	CCWWGG	1 cut(s)	427
Eco24I	GRGCYC	1 cut(s)	312
Eco57I	CTGAAG	1 cut(s)	660
Eco88I	CYCGRG	2 cut(s)	270, 454
EcoRII	CCWGG	2 cut(s)	57, 551
EcoT14I	CCWWGG	1 cut(s)	427
EcoT38I	GRGCYC	1 cut(s)	312
ErhI	CCWWGG	1 cut(s)	427
FaeI	CATG	5 cut(s)	215, 301, 316, 431, 680
FalI	AAGNNNNNCTT	2 cut(s)	36, 68
FaqI	GGGAC	1 cut(s)	431
FatI	CATG	5 cut(s)	211, 297, 312, 427, 676
FauI	CCCGC	1 cut(s)	742
Fnu4HI	GCNGC	5 cut(s)	326, 483, 486, 510, 738
FokI	GGATG	2 cut(s)	426, 643
FriOI	GRGCYC	1 cut(s)	312
Fsp4HI	GCNGC	5 cut(s)	326, 483, 486, 510, 738
FspBI	CTAG	2 cut(s)	609, 629
GluI	GCNGC	5 cut(s)	326, 483, 486, 510, 738
HaeIII	GGCC	1 cut(s)	80
HapII	CCGG	2 cut(s)	93, 317
Hin1II	CATG	5 cut(s)	215, 301, 316, 431, 680
HindIII	AAGCTT	1 cut(s)	161
HinfI	GANTC	4 cut(s)	108, 652, 692, 727
HpaII	CCGG	2 cut(s)	93, 317
HphI	GGTGA	4 cut(s)	145, 152, 678, 691
Hpy166II	GTNNAC	1 cut(s)	682
Hpy188I	TCNGA	5 cut(s)	9, 244, 588, 622, 651
Hpy188III	TCNNGA	1 cut(s)	523
Hpy8I	GTNNAC	1 cut(s)	682
HpyAV	CCTTC	3 cut(s)	38, 304, 574
HpyCH4III	ACNGT	5 cut(s)	125, 369, 667, 708, 722
HpyCH4IV	ACGT	1 cut(s)	286
HpyCH4V	TGCA	3 cut(s)	410, 485, 548
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 98, 322, 494
HpyF3I	CTNAG	4 cut(s)	186, 513, 621, 690
HpySE526I	ACGT	1 cut(s)	286
Hsp92II	CATG	5 cut(s)	215, 301, 316, 431, 680
Kzo9I	GATC	1 cut(s)	135
LmnI	GCTCC	1 cut(s)	494
Lsp1109I	GCAGC	4 cut(s)	337, 469, 497, 724
LweI	GCATC	2 cut(s)	235, 535
MabI	ACCWGGT	1 cut(s)	57
MaeI	CTAG	2 cut(s)	609, 629
MaeII	ACGT	1 cut(s)	286
MaeIII	GTNAC	5 cut(s)	151, 287, 344, 449, 724
MalI	GATC	1 cut(s)	137
MboI	GATC	1 cut(s)	135
MboII	GAAGA	5 cut(s)	25, 157, 158, 371, 569
MhlI	GDGCHC	1 cut(s)	312
MlyI	GAGTC	3 cut(s)	646, 701, 721
MmeI	TCCRAC	2 cut(s)	455, 472
MnlI	CCTC	4 cut(s)	70, 166, 184, 190
MseI	TTAA	3 cut(s)	614, 669, 751
MslI	CAYNNNNRTG	1 cut(s)	296
MspA1I	CMGCKG	3 cut(s)	328, 488, 737
MspI	CCGG	2 cut(s)	93, 317
MspR9I	CCNGG	2 cut(s)	59, 553
MvaI	CCWGG	2 cut(s)	59, 553
MwoI	GCNNNNNNNGC	4 cut(s)	77, 98, 322, 494
NcoI	CCATGG	1 cut(s)	427
NdeII	GATC	1 cut(s)	135
NlaIII	CATG	5 cut(s)	215, 301, 316, 431, 680
NmuCI	GTSAC	4 cut(s)	151, 344, 449, 724
PaeR7I	CTCGAG	1 cut(s)	270
PfeI	GAWTC	1 cut(s)	108
PkrI	GCNGC	5 cut(s)	327, 484, 487, 511, 739
PleI	GAGTC	3 cut(s)	646, 700, 721
PpsI	GAGTC	3 cut(s)	646, 700, 721
Psp1406I	AACGTT	1 cut(s)	286
Psp6I	CCWGG	2 cut(s)	57, 551
PspGI	CCWGG	2 cut(s)	57, 551
PspXI	VCTCGAGB	1 cut(s)	270
PstI	CTGCAG	1 cut(s)	487
PvuII	CAGCTG	2 cut(s)	328, 488
RsaI	GTAC	4 cut(s)	25, 197, 302, 674
RsaNI	GTAC	4 cut(s)	24, 196, 301, 673
RseI	CAYNNNNRTG	1 cut(s)	296
SaqAI	TTAA	3 cut(s)	614, 669, 751
SatI	GCNGC	5 cut(s)	326, 483, 486, 510, 738
Sau3AI	GATC	1 cut(s)	135
SchI	GAGTC	3 cut(s)	646, 701, 721
ScrFI	CCNGG	2 cut(s)	59, 553
SduI	GDGCHC	1 cut(s)	312
SexAI	ACCWGGT	1 cut(s)	57
SfaNI	GCATC	2 cut(s)	235, 535
SfcI	CTRYAG	1 cut(s)	483
Sfr274I	CTCGAG	1 cut(s)	270
SlaI	CTCGAG	1 cut(s)	270
SmiMI	CAYNNNNRTG	1 cut(s)	296
SmlI	CTYRAG	1 cut(s)	270
SmoI	CTYRAG	1 cut(s)	270
SsiI	CCGC	2 cut(s)	509, 735
SspMI	CTAG	2 cut(s)	609, 629
StyD4I	CCNGG	2 cut(s)	57, 551
StyI	CCWWGG	1 cut(s)	427
TaaI	ACNGT	5 cut(s)	125, 369, 667, 708, 722
TaiI	ACGT	1 cut(s)	289
TaqI	TCGA	2 cut(s)	271, 567
TatI	WGTACW	1 cut(s)	195
TauI	GCSGC	1 cut(s)	512
TfiI	GAWTC	1 cut(s)	108
Tru1I	TTAA	3 cut(s)	614, 669, 751
Tru9I	TTAA	3 cut(s)	614, 669, 751
TseFI	GTSAC	4 cut(s)	151, 344, 449, 724
TseI	GCWGC	4 cut(s)	325, 482, 485, 737
Tsp45I	GTSAC	4 cut(s)	151, 344, 449, 724
TspDTI	ATGAA	1 cut(s)	286
XhoI	CTCGAG	1 cut(s)	270
XspI	CTAG	2 cut(s)	609, 629

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.