Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp03

Orthogroup ID

OG0008334

Physical Location & Seq

Genomic Coordinates Reverse (-)

19903470 .. 19904344

Gene Structure 875 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.3G183900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 462 bp

ATGTCTAGGAGATATGATAGCCGTACAACCATCTTTTCCCCTGAGGGTCGTCTCTACCAAGTTGAGTATGCAATGGAGGCCATTGGAAATGCGGGTACTGCAATTGGGATTTTGTCAAAAGATGGGGTTATCTTAGTTGGGTCCAGGCTCAGCGCTATATGTTTGCGTACCAAGAACCAATGCCCGTTGAGCAGCTTGTTCAATCTCTTTGTGATACTAAGCAGGGCTACACACAGTTTGGTGGTCTCCGGCCCTTTGGTGTTTCATTTTTGTTTGCGGGTTGGGGACAAGAATTTCGGTTTTCAACTTTACTTGAGTGACCCTAGTGGAAACTATGCTGGCTGGAAGGCTGCAGTGATTGGTGCGAACAACCAAGCGGCTCAATCGATGCTTAAACAGGATTACAAGGATGATATGACGAGGGAAGAGGGAGGTCAGCTAGCACTGTGTTGGTGGTCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005839 GO:0019773 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

154

Amino Acids

16.86

Weight (kDa)

8.73

Isoelectric Point (pI)

45.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22110 AT4G15165
fragaria_vesca	FvH4_3g13020
malus_domestica	MD05G1246200.v1.1 MD09G1143900.v1.1 MD10G1227000.v1.1
prunus_persica	Prupe.3G183900_v2.0.a1 Prupe.4G118100_v2.0.a1
pyrus_communis	pycom09g06330 pycom17g12310
rosa_chinensis	RchiOBHm_Chr5g0021211
rosa_laevigata	RLG00000032595
rosa_multiflora	Rmu_co8270601.1_g000001 Rmu_sc0002467.1_g000016 Rmu_sc0003392.1_g000019 Rmu_sc0019507.1_g000001 Rmu_sc0039744.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057290
rosa_rugosa	Rorug05G0065200
rosa_samantha	Rh5AG154100 Rh5CG167400 Rh5DG154200
rosa_wichuraiana	Rw5G013740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	3 cut(s)	92, 277, 377
AcsI	RAATTY	1 cut(s)	292
AfaI	GTAC	3 cut(s)	25, 97, 169
AfeI	AGCGCT	1 cut(s)	154
AgsI	TTSAA	2 cut(s)	202, 305
AjnI	CCWGG	1 cut(s)	143
AluBI	AGCT	2 cut(s)	195, 439
AluI	AGCT	2 cut(s)	195, 439
Alw26I	GTCTC	2 cut(s)	56, 250
Aor51HI	AGCGCT	1 cut(s)	154
AoxI	GGCC	2 cut(s)	78, 250
ApeKI	GCWGC	2 cut(s)	192, 350
ApoI	RAATTY	1 cut(s)	292
ArsI	GACNNNNNNTTYG	2 cut(s)	278, 310
AspLEI	GCGC	1 cut(s)	155
AspS9I	GGNCC	3 cut(s)	141, 251, 456
AsuNHI	GCTAGC	1 cut(s)	439
AvaII	GGWCC	2 cut(s)	141, 456
AxyI	CCTNAGG	1 cut(s)	42
BbvI	GCAGC	2 cut(s)	204, 337
BccI	CCATC	2 cut(s)	38, 116
BceAI	ACGGC	1 cut(s)	6
BciT130I	CCWGG	1 cut(s)	145
BcoDI	GTCTC	2 cut(s)	56, 250
BfaI	CTAG	4 cut(s)	6, 324, 440, 460
BfmI	CTRYAG	1 cut(s)	351
BfoI	RGCGCY	1 cut(s)	156
BisI	GCNGC	3 cut(s)	193, 351, 378
BlpI	GCTNAGC	1 cut(s)	149
BlsI	GCNGC	3 cut(s)	194, 352, 379
Bme1390I	CCNGG	1 cut(s)	145
Bme18I	GGWCC	2 cut(s)	141, 456
BmgT120I	GGNCC	3 cut(s)	141, 251, 456
BmiI	GGNNCC	1 cut(s)	142
BmrFI	CCNGG	1 cut(s)	145
BmsI	GCATC	1 cut(s)	378
BmtI	GCTAGC	1 cut(s)	443
Bpu1102I	GCTNAGC	1 cut(s)	149
BpuEI	CTTGAG	1 cut(s)	334
Bsa29I	ATCGAT	1 cut(s)	386
BsaI	GGTCTC	1 cut(s)	250
Bse21I	CCTNAGG	1 cut(s)	42
Bse3DI	GCAATG	1 cut(s)	78
BseBI	CCWGG	1 cut(s)	145
BseCI	ATCGAT	1 cut(s)	386
BseGI	GGATG	1 cut(s)	415
BseMI	GCAATG	1 cut(s)	78
BseMII	CTCAG	2 cut(s)	33, 163
BseXI	GCAGC	2 cut(s)	204, 337
BshFI	GGCC	2 cut(s)	80, 252
BshVI	ATCGAT	1 cut(s)	386
BsiSI	CCGG	1 cut(s)	249
BslFI	GGGAC	1 cut(s)	299
BsmAI	GTCTC	2 cut(s)	56, 250
BsmBI	CGTCTC	1 cut(s)	56
BsmFI	GGGAC	1 cut(s)	299
BsnI	GGCC	2 cut(s)	80, 252
Bso31I	GGTCTC	1 cut(s)	250
Bsp1720I	GCTNAGC	1 cut(s)	149
BspACI	CCGC	3 cut(s)	92, 277, 377
BspANI	GGCC	2 cut(s)	80, 252
BspCNI	CTCAG	2 cut(s)	34, 162
BspDI	ATCGAT	1 cut(s)	386
BspLI	GGNNCC	1 cut(s)	142
BspMAI	CTGCAG	1 cut(s)	355
BspOI	GCTAGC	1 cut(s)	443
BspTNI	GGTCTC	1 cut(s)	250
BsrDI	GCAATG	1 cut(s)	78
Bst2UI	CCWGG	1 cut(s)	145
Bst4CI	ACNGT	2 cut(s)	236, 447
Bst6I	CTCTTC	1 cut(s)	420
BstC8I	GCNNGC	2 cut(s)	340, 441
BstDEI	CTNAG	4 cut(s)	42, 133, 149, 218
BstF5I	GGATG	1 cut(s)	415
BstH2I	RGCGCY	1 cut(s)	156
BstHHI	GCGC	1 cut(s)	155
BstMAI	GTCTC	2 cut(s)	56, 250
BstMWI	GCNNNNNNNGC	3 cut(s)	77, 98, 189
BstNI	CCWGG	1 cut(s)	145
BstSCI	CCNGG	1 cut(s)	143
BstSFI	CTRYAG	1 cut(s)	351
BstV1I	GCAGC	2 cut(s)	204, 337
Bsu15I	ATCGAT	1 cut(s)	386
Bsu36I	CCTNAGG	1 cut(s)	42
BsuRI	GGCC	2 cut(s)	80, 252
BsuTUI	ATCGAT	1 cut(s)	386
BtsCI	GGATG	1 cut(s)	415
BtsI	GCAGTG	1 cut(s)	360
BtsIMutI	CAGTG	2 cut(s)	360, 443
Cac8I	GCNNGC	2 cut(s)	340, 441
CfoI	GCGC	1 cut(s)	155
Cfr13I	GGNCC	3 cut(s)	141, 251, 456
ClaI	ATCGAT	1 cut(s)	386
Csp6I	GTAC	3 cut(s)	24, 96, 168
CviQI	GTAC	3 cut(s)	24, 96, 168
DdeI	CTNAG	4 cut(s)	42, 133, 149, 218
Eam1104I	CTCTTC	1 cut(s)	420
EarI	CTCTTC	1 cut(s)	420
Eco31I	GGTCTC	1 cut(s)	250
Eco47I	GGWCC	2 cut(s)	141, 456
Eco47III	AGCGCT	1 cut(s)	154
Eco81I	CCTNAGG	1 cut(s)	42
EcoRII	CCWGG	1 cut(s)	143
Esp3I	CGTCTC	1 cut(s)	56
FaiI	YATR	6 cut(s)	15, 69, 158, 160, 336, 416
FaqI	GGGAC	1 cut(s)	299
FauI	CCCGC	2 cut(s)	85, 270
Fnu4HI	GCNGC	3 cut(s)	193, 351, 378
FokI	GGATG	1 cut(s)	422
Fsp4HI	GCNGC	3 cut(s)	193, 351, 378
FspBI	CTAG	4 cut(s)	6, 324, 440, 460
GlaI	GCGC	1 cut(s)	154
GluI	GCNGC	3 cut(s)	193, 351, 378
HaeII	RGCGCY	1 cut(s)	156
HaeIII	GGCC	2 cut(s)	80, 252
HapII	CCGG	1 cut(s)	249
HhaI	GCGC	1 cut(s)	155
Hin6I	GCGC	1 cut(s)	153
HinP1I	GCGC	1 cut(s)	153
HpaII	CCGG	1 cut(s)	249
HpyAV	CCTTC	1 cut(s)	340
HpyCH4III	ACNGT	2 cut(s)	236, 447
HpyCH4V	TGCA	3 cut(s)	71, 101, 353
HpyF10VI	GCNNNNNNNGC	3 cut(s)	77, 98, 189
HpyF3I	CTNAG	4 cut(s)	42, 133, 149, 218
HspAI	GCGC	1 cut(s)	153
LpnPI	CCDG	8 cut(s)	54, 130, 157, 208, 262, 324, 328, 383
Lsp1109I	GCAGC	2 cut(s)	204, 337
LweI	GCATC	1 cut(s)	378
MaeI	CTAG	4 cut(s)	6, 324, 440, 460
MaeIII	GTNAC	1 cut(s)	317
MboII	GAAGA	1 cut(s)	437
MfeI	CAATTG	1 cut(s)	102
MluCI	AATT	2 cut(s)	102, 292
MnlI	CCTC	5 cut(s)	37, 70, 414, 421, 425
MseI	TTAA	1 cut(s)	393
MspI	CCGG	1 cut(s)	249
MspR9I	CCNGG	1 cut(s)	145
MunI	CAATTG	1 cut(s)	102
MvaI	CCWGG	1 cut(s)	145
MwoI	GCNNNNNNNGC	3 cut(s)	77, 98, 189
NheI	GCTAGC	1 cut(s)	439
NlaIV	GGNNCC	1 cut(s)	142
NmuCI	GTSAC	1 cut(s)	317
PkrI	GCNGC	3 cut(s)	194, 352, 379
Psp6I	CCWGG	1 cut(s)	143
PspGI	CCWGG	1 cut(s)	143
PspN4I	GGNNCC	1 cut(s)	142
PspPI	GGNCC	3 cut(s)	141, 251, 456
PstI	CTGCAG	1 cut(s)	355
RsaI	GTAC	3 cut(s)	25, 97, 169
RsaNI	GTAC	3 cut(s)	24, 96, 168
SaqAI	TTAA	1 cut(s)	393
SatI	GCNGC	3 cut(s)	193, 351, 378
Sau96I	GGNCC	3 cut(s)	141, 251, 456
ScrFI	CCNGG	1 cut(s)	145
SetI	ASST	3 cut(s)	197, 436, 441
SfaNI	GCATC	1 cut(s)	378
SfcI	CTRYAG	1 cut(s)	351
SinI	GGWCC	2 cut(s)	141, 456
SmlI	CTYRAG	1 cut(s)	313
SmoI	CTYRAG	1 cut(s)	313
Sse9I	AATT	2 cut(s)	102, 292
SsiI	CCGC	3 cut(s)	92, 277, 377
SspMI	CTAG	4 cut(s)	6, 324, 440, 460
StyD4I	CCNGG	1 cut(s)	143
TaaI	ACNGT	2 cut(s)	236, 447
TaqI	TCGA	1 cut(s)	386
TasI	AATT	2 cut(s)	102, 292
TauI	GCSGC	1 cut(s)	380
Tru1I	TTAA	1 cut(s)	393
Tru9I	TTAA	1 cut(s)	393
TscAI	CASTG	2 cut(s)	360, 450
TseFI	GTSAC	1 cut(s)	317
TseI	GCWGC	2 cut(s)	192, 350
Tsp45I	GTSAC	1 cut(s)	317
TspDTI	ATGAA	1 cut(s)	254
TspRI	CASTG	2 cut(s)	360, 450
VpaK11BI	GGWCC	2 cut(s)	141, 456
XapI	RAATTY	1 cut(s)	292
XspI	CTAG	4 cut(s)	6, 324, 440, 460

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.