pycom09g06330

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr9
OG0008334
Physical Location & Seq
Forward (+)
4665608 .. 4665866
259 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom09g06330.1

Sequence Viewer

Length: 207 bp
ATGTCTTGGAGATATGATAGCCGGACAACAATCTTTTCCCCTGAGGGCCGTCTCTACCAAGTTGAGTACGCAATGGAGGTCATTGGGAATGCGGGTACCGCAATCGGTATACTGTCGAAAGACAGGGTTGTCTTGGTTGGTGAGAAGAAAGTCACATCCAAACTCCTCCAATCCTCAACTTCCACTGAGAAAATGCCAACATTCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005839 GO:0019773 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1905368 GO:1905369
KEGG Pathways
Metabolic & Signaling
ko03050 map03050
Pfam Domains
Protein Families
Proteasome Proteasome_A_N

Protein Analysis

69

Amino Acids

7.6

Weight (kDa)

9.16

Isoelectric Point (pI)

57.61

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proteasome_A_N PF10584 5 - 26 3.1e-13 Proteasome subunit A N-terminal signature
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 128
Acc65I GGTACC 1 cut(s) 95
AccB1I GGYRCC 1 cut(s) 95
AccI GTMKAC 1 cut(s) 109
AciI CCGC 2 cut(s) 92, 99
AfaI GTAC 2 cut(s) 68, 97
Alw26I GTCTC 1 cut(s) 56
AoxI GGCC 1 cut(s) 46
Asp718I GGTACC 1 cut(s) 95
AspS9I GGNCC 1 cut(s) 46
AsuHPI GGTGA 1 cut(s) 152
AxyI CCTNAGG 1 cut(s) 42
BanI GGYRCC 1 cut(s) 95
BceAI ACGGC 1 cut(s) 33
BcoDI GTCTC 1 cut(s) 56
BmgT120I GGNCC 1 cut(s) 46
BmiI GGNNCC 1 cut(s) 97
Bse21I CCTNAGG 1 cut(s) 42
Bse3DI GCAATG 1 cut(s) 78
BseGI GGATG 1 cut(s) 155
BseMI GCAATG 1 cut(s) 78
BseMII CTCAG 2 cut(s) 33, 177
BseRI GAGGAG 1 cut(s) 155
BshFI GGCC 1 cut(s) 48
BshNI GGYRCC 1 cut(s) 95
BsiSI CCGG 1 cut(s) 22
BsmAI GTCTC 1 cut(s) 56
BsmBI CGTCTC 1 cut(s) 56
BsmI GAATGC 1 cut(s) 94
BsnI GGCC 1 cut(s) 48
BspACI CCGC 2 cut(s) 92, 99
BspANI GGCC 1 cut(s) 48
BspCNI CTCAG 2 cut(s) 34, 178
BspLI GGNNCC 1 cut(s) 97
BspT107I GGYRCC 1 cut(s) 95
BsrDI GCAATG 1 cut(s) 78
BssNAI GTATAC 1 cut(s) 110
Bst1107I GTATAC 1 cut(s) 110
Bst4CI ACNGT 1 cut(s) 114
BstDEI CTNAG 2 cut(s) 42, 186
BstF5I GGATG 1 cut(s) 155
BstMAI GTCTC 1 cut(s) 56
BstMWI GCNNNNNNNGC 1 cut(s) 98
BstZ17I GTATAC 1 cut(s) 110
Bsu36I CCTNAGG 1 cut(s) 42
BsuRI GGCC 1 cut(s) 48
BtsCI GGATG 1 cut(s) 155
BtsIMutI CAGTG 1 cut(s) 183
Cfr13I GGNCC 1 cut(s) 46
Csp6I GTAC 2 cut(s) 67, 96
CviJI RGCY 2 cut(s) 21, 48
CviKI_1 RGCY 2 cut(s) 21, 48
CviQI GTAC 2 cut(s) 67, 96
DdeI CTNAG 2 cut(s) 42, 186
DrdI GACNNNNNNGTC 1 cut(s) 128
DseDI GACNNNNNNGTC 1 cut(s) 128
Eco81I CCTNAGG 1 cut(s) 42
Esp3I CGTCTC 1 cut(s) 56
FaiI YATR 2 cut(s) 15, 110
FauI CCCGC 1 cut(s) 85
FblI GTMKAC 1 cut(s) 109
FokI GGATG 1 cut(s) 142
HaeIII GGCC 1 cut(s) 48
HapII CCGG 1 cut(s) 22
HpaII CCGG 1 cut(s) 22
HphI GGTGA 1 cut(s) 152
Hpy166II GTNNAC 1 cut(s) 110
Hpy188I TCNGA 1 cut(s) 206
Hpy8I GTNNAC 1 cut(s) 110
HpyCH4III ACNGT 1 cut(s) 114
HpyF10VI GCNNNNNNNGC 1 cut(s) 98
HpyF3I CTNAG 2 cut(s) 42, 186
KpnI GGTACC 1 cut(s) 99
LpnPI CCDG 3 cut(s) 35, 54, 109
MaeIII GTNAC 1 cut(s) 151
MboII GAAGA 1 cut(s) 157
MnlI CCTC 4 cut(s) 37, 70, 176, 184
MspI CCGG 1 cut(s) 22
Mva1269I GAATGC 1 cut(s) 94
MwoI GCNNNNNNNGC 1 cut(s) 98
NlaIV GGNNCC 1 cut(s) 97
NmuCI GTSAC 1 cut(s) 151
PctI GAATGC 1 cut(s) 94
PspN4I GGNNCC 1 cut(s) 97
PspPI GGNCC 1 cut(s) 46
RsaI GTAC 2 cut(s) 68, 97
RsaNI GTAC 2 cut(s) 67, 96
Sau96I GGNCC 1 cut(s) 46
SetI ASST 1 cut(s) 81
SgeI CNNG 7 cut(s) 18, 34, 53, 71, 105, 136, 145
SsiI CCGC 2 cut(s) 92, 99
TaaI ACNGT 1 cut(s) 114
TaqI TCGA 1 cut(s) 116
TscAI CASTG 1 cut(s) 190
TseFI GTSAC 1 cut(s) 151
Tsp45I GTSAC 1 cut(s) 151
TspRI CASTG 1 cut(s) 190
XmiI GTMKAC 1 cut(s) 109
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.