Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008334

Physical Location & Seq

Genomic Coordinates Forward (+)

8648832 .. 8650382

Gene Structure 1551 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT4G15165.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 627 bp

ATGTCTCGGAGGTATGATAGTCGCACCACGATCTTCTCACCGGAAGGTCGTCTCTACCAGGTTGAATATGCTATGGAAGCTATTGGCAATGCTGGTTCTGCCATTGGAATCTTGGCAAAAGACGGAGTGGTGTTGGTTGGTGAGAAGAAAGTCACTTCTAAACTTCTTCAAACCTCTTCATCCATGGAGAAAATGTACAAGATCGATGACCATGTGGCTTGTGCAGTTGCTGGTATAATGTCTGATGCCAACATTCTGATTAACACTGCTCGAGTTCAAGCTCAGCGCTGGGACAGGAACCACGGGTTTCAGCTGTATATGAGTGACCCAAGTGGAAACTATGGTGGATGGCAAGCTGCAGCTGTTGGAGCAAATAATCAAGCGGCTCAGTCTATTCTTAAGCAAGACTATAAGGATGATGCAACGAGGGAAGAAGTGGTTCAGCTCGCTATCAAGGTTTTGAGCAAGACGATGGACAGCACGAGCTTGACAGCTGAAAAACTCGAGCTTGCTGAGTTGTATCTGACTCCTTCAAAATGTGTTAAGTACCATGTTCACTCGCCTGACTCGCTCACTAAGCTCTTGGTTAAGCATGGTGTGACTCAACCAGCCGCAGAAACTTCCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005773 GO:0005829 GO:0005839 GO:0005840 GO:0008150 GO:0010035 GO:0010038 GO:0019773 GO:0022626 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044424 GO:0044444 GO:0044445 GO:0044464 GO:0046686 GO:0050896 GO:1902494 GO:1905368 GO:1905369 GO:1990904

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

208

Amino Acids

22.73

Weight (kDa)

6.96

Isoelectric Point (pI)

48.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome_A_N	PF10584	5 - 27	1.8e-13	Proteasome subunit A N-terminal signature
Proteasome	PF00227	30 - 101	1.1e-17	Proteasome subunit
Proteasome	PF00227	97 - 171	1.8e-16	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22110 AT4G15165
fragaria_vesca	FvH4_3g13020
malus_domestica	MD05G1246200.v1.1 MD09G1143900.v1.1 MD10G1227000.v1.1
prunus_persica	Prupe.3G183900_v2.0.a1 Prupe.4G118100_v2.0.a1
pyrus_communis	pycom09g06330 pycom17g12310
rosa_chinensis	RchiOBHm_Chr5g0021211
rosa_laevigata	RLG00000032595
rosa_multiflora	Rmu_co8270601.1_g000001 Rmu_sc0002467.1_g000016 Rmu_sc0003392.1_g000019 Rmu_sc0019507.1_g000001 Rmu_sc0039744.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057290
rosa_rugosa	Rorug05G0065200
rosa_samantha	Rh5AG154100 Rh5CG167400 Rh5DG154200
rosa_wichuraiana	Rw5G013740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	2 cut(s)	383, 612
AfaI	GTAC	2 cut(s)	197, 548
AfeI	AGCGCT	1 cut(s)	287
AflII	CTTAAG	1 cut(s)	398
AgsI	TTSAA	4 cut(s)	65, 170, 278, 534
AjnI	CCWGG	1 cut(s)	57
Alw26I	GTCTC	2 cut(s)	9, 56
AlwNI	CAGNNNCTG	1 cut(s)	230
Ama87I	CYCGRG	2 cut(s)	270, 503
Aor51HI	AGCGCT	1 cut(s)	287
ApeKI	GCWGC	2 cut(s)	356, 359
Asp700I	GAANNNNTTC	1 cut(s)	438
AspLEI	GCGC	1 cut(s)	288
AsuHPI	GGTGA	2 cut(s)	30, 152
AvaI	CYCGRG	2 cut(s)	270, 503
BauI	CACGAG	1 cut(s)	481
BbvI	GCAGC	2 cut(s)	343, 371
BccI	CCATC	2 cut(s)	342, 466
BciT130I	CCWGG	1 cut(s)	59
BcoDI	GTCTC	2 cut(s)	9, 56
BfmI	CTRYAG	1 cut(s)	357
BfoI	RGCGCY	1 cut(s)	289
BfrI	CTTAAG	1 cut(s)	398
BisI	GCNGC	4 cut(s)	357, 360, 384, 612
BlpI	GCTNAGC	1 cut(s)	282
BlsI	GCNGC	4 cut(s)	358, 361, 385, 613
Bme1390I	CCNGG	1 cut(s)	59
BmeT110I	CYCGRG	2 cut(s)	270, 503
BmiI	GGNNCC	1 cut(s)	299
BmrFI	CCNGG	1 cut(s)	59
BmsI	GCATC	2 cut(s)	235, 409
Bpu1102I	GCTNAGC	1 cut(s)	282
Bsa29I	ATCGAT	1 cut(s)	204
BsaJI	CCNNGG	2 cut(s)	183, 301
BsaWI	WCCGGW	1 cut(s)	40
BsaXI	ACNNNNNCTCC	2 cut(s)	179, 209
Bse3DI	GCAATG	1 cut(s)	94
BseBI	CCWGG	1 cut(s)	59
BseCI	ATCGAT	1 cut(s)	204
BseDI	CCNNGG	2 cut(s)	183, 301
BseGI	GGATG	3 cut(s)	179, 353, 421
BseMI	GCAATG	1 cut(s)	94
BseMII	CTCAG	3 cut(s)	296, 401, 504
BseXI	GCAGC	2 cut(s)	343, 371
BseYI	CCCAGC	1 cut(s)	288
BsgI	GTGCAG	1 cut(s)	243
BshVI	ATCGAT	1 cut(s)	204
BsiHKCI	CYCGRG	2 cut(s)	270, 503
BsiSI	CCGG	1 cut(s)	41
BslFI	GGGAC	1 cut(s)	305
BsmAI	GTCTC	2 cut(s)	9, 56
BsmBI	CGTCTC	1 cut(s)	56
BsmFI	GGGAC	1 cut(s)	305
BsoBI	CYCGRG	2 cut(s)	270, 503
Bsp1407I	TGTACA	1 cut(s)	195
Bsp143I	GATC	2 cut(s)	30, 201
Bsp1720I	GCTNAGC	1 cut(s)	282
Bsp19I	CCATGG	1 cut(s)	183
BspACI	CCGC	2 cut(s)	383, 612
BspCNI	CTCAG	3 cut(s)	295, 400, 505
BspDI	ATCGAT	1 cut(s)	204
BspLI	GGNNCC	1 cut(s)	299
BspMAI	CTGCAG	1 cut(s)	361
BspTI	CTTAAG	1 cut(s)	398
BsrDI	GCAATG	1 cut(s)	94
BsrGI	TGTACA	1 cut(s)	195
BssECI	CCNNGG	2 cut(s)	183, 301
BssMI	GATC	2 cut(s)	30, 201
BssSI	CACGAG	1 cut(s)	481
BssT1I	CCWWGG	1 cut(s)	183
Bst2BI	CACGAG	1 cut(s)	481
Bst2UI	CCWGG	1 cut(s)	59
Bst6I	CTCTTC	1 cut(s)	181
BstAFI	CTTAAG	1 cut(s)	398
BstAUI	TGTACA	1 cut(s)	195
BstC8I	GCNNGC	3 cut(s)	354, 447, 510
BstDEI	CTNAG	4 cut(s)	282, 387, 513, 576
BstDSI	CCRYGG	2 cut(s)	183, 301
BstF5I	GGATG	3 cut(s)	179, 353, 421
BstH2I	RGCGCY	1 cut(s)	289
BstHHI	GCGC	1 cut(s)	288
BstKTI	GATC	2 cut(s)	33, 204
BstMAI	GTCTC	2 cut(s)	9, 56
BstMBI	GATC	2 cut(s)	30, 201
BstMWI	GCNNNNNNNGC	5 cut(s)	77, 98, 368, 568, 577
BstNI	CCWGG	1 cut(s)	59
BstSCI	CCNGG	1 cut(s)	57
BstSFI	CTRYAG	1 cut(s)	357
BstV1I	GCAGC	2 cut(s)	343, 371
Bsu15I	ATCGAT	1 cut(s)	204
BsuTUI	ATCGAT	1 cut(s)	204
BtgI	CCRYGG	2 cut(s)	183, 301
BtsCI	GGATG	3 cut(s)	179, 353, 421
BtsI	GCAGTG	1 cut(s)	264
BtsIMutI	CAGTG	1 cut(s)	264
Cac8I	GCNNGC	3 cut(s)	354, 447, 510
CaiI	CAGNNNCTG	1 cut(s)	230
CfoI	GCGC	1 cut(s)	288
ClaI	ATCGAT	1 cut(s)	204
CsiI	ACCWGGT	1 cut(s)	57
Csp6I	GTAC	2 cut(s)	196, 547
CviAII	CATG	4 cut(s)	184, 212, 551, 593
CviQI	GTAC	2 cut(s)	196, 547
DdeI	CTNAG	4 cut(s)	282, 387, 513, 576
DpnI	GATC	2 cut(s)	32, 203
DpnII	GATC	2 cut(s)	30, 201
Eam1104I	CTCTTC	1 cut(s)	181
EarI	CTCTTC	1 cut(s)	181
Eco130I	CCWWGG	1 cut(s)	183
Eco47III	AGCGCT	1 cut(s)	287
Eco88I	CYCGRG	2 cut(s)	270, 503
EcoRII	CCWGG	1 cut(s)	57
EcoT14I	CCWWGG	1 cut(s)	183
ErhI	CCWWGG	1 cut(s)	183
Esp3I	CGTCTC	1 cut(s)	56
FaeI	CATG	4 cut(s)	187, 215, 554, 596
FaqI	GGGAC	1 cut(s)	305
FatI	CATG	4 cut(s)	183, 211, 550, 592
Fnu4HI	GCNGC	4 cut(s)	357, 360, 384, 612
FokI	GGATG	3 cut(s)	166, 360, 428
Fsp4HI	GCNGC	4 cut(s)	357, 360, 384, 612
GlaI	GCGC	1 cut(s)	287
GluI	GCNGC	4 cut(s)	357, 360, 384, 612
GsaI	CCCAGC	1 cut(s)	292
HaeII	RGCGCY	1 cut(s)	289
HapII	CCGG	1 cut(s)	41
HhaI	GCGC	1 cut(s)	288
Hin1II	CATG	4 cut(s)	187, 215, 554, 596
Hin6I	GCGC	1 cut(s)	286
HinP1I	GCGC	1 cut(s)	286
HinfI	GANTC	4 cut(s)	108, 526, 566, 601
HpaII	CCGG	1 cut(s)	41
HphI	GGTGA	2 cut(s)	30, 152
Hpy166II	GTNNAC	1 cut(s)	556
Hpy188I	TCNGA	4 cut(s)	9, 244, 258, 525
Hpy8I	GTNNAC	1 cut(s)	556
HpyAV	CCTTC	2 cut(s)	38, 540
HpyCH4V	TGCA	3 cut(s)	224, 359, 422
HpyF10VI	GCNNNNNNNGC	5 cut(s)	77, 98, 368, 568, 577
HpyF3I	CTNAG	4 cut(s)	282, 387, 513, 576
Hsp92II	CATG	4 cut(s)	187, 215, 554, 596
HspAI	GCGC	1 cut(s)	286
Kzo9I	GATC	2 cut(s)	30, 201
LmnI	GCTCC	1 cut(s)	368
LpnPI	CCDG	9 cut(s)	44, 54, 71, 78, 216, 274, 280, 576, 621
Lsp1109I	GCAGC	2 cut(s)	343, 371
LweI	GCATC	2 cut(s)	235, 409
MabI	ACCWGGT	1 cut(s)	57
MaeIII	GTNAC	3 cut(s)	151, 323, 598
MalI	GATC	2 cut(s)	32, 203
MboI	GATC	2 cut(s)	30, 201
MboII	GAAGA	5 cut(s)	25, 157, 158, 168, 443
MlyI	GAGTC	3 cut(s)	520, 560, 595
MmeI	TCCRAC	1 cut(s)	346
MnlI	CCTC	3 cut(s)	3, 184, 420
MroXI	GAANNNNTTC	1 cut(s)	438
MseI	TTAA	4 cut(s)	261, 399, 543, 588
MspA1I	CMGCKG	3 cut(s)	313, 362, 494
MspCI	CTTAAG	1 cut(s)	398
MspI	CCGG	1 cut(s)	41
MspR9I	CCNGG	1 cut(s)	59
MvaI	CCWGG	1 cut(s)	59
MwoI	GCNNNNNNNGC	5 cut(s)	77, 98, 368, 568, 577
NcoI	CCATGG	1 cut(s)	183
NdeII	GATC	2 cut(s)	30, 201
NlaIII	CATG	4 cut(s)	187, 215, 554, 596
NlaIV	GGNNCC	1 cut(s)	299
NmuCI	GTSAC	3 cut(s)	151, 323, 598
PaeR7I	CTCGAG	2 cut(s)	270, 503
PdmI	GAANNNNTTC	1 cut(s)	438
PfeI	GAWTC	1 cut(s)	108
PkrI	GCNGC	4 cut(s)	358, 361, 385, 613
PleI	GAGTC	3 cut(s)	520, 560, 595
PpsI	GAGTC	3 cut(s)	520, 560, 595
Psp6I	CCWGG	1 cut(s)	57
PspFI	CCCAGC	1 cut(s)	288
PspGI	CCWGG	1 cut(s)	57
PspN4I	GGNNCC	1 cut(s)	299
PspXI	VCTCGAGB	2 cut(s)	270, 503
PstI	CTGCAG	1 cut(s)	361
PstNI	CAGNNNCTG	1 cut(s)	230
PvuII	CAGCTG	3 cut(s)	313, 362, 494
RsaI	GTAC	2 cut(s)	197, 548
RsaNI	GTAC	2 cut(s)	196, 547
SaqAI	TTAA	4 cut(s)	261, 399, 543, 588
SatI	GCNGC	4 cut(s)	357, 360, 384, 612
Sau3AI	GATC	2 cut(s)	30, 201
SchI	GAGTC	3 cut(s)	520, 560, 595
ScrFI	CCNGG	1 cut(s)	59
SexAI	ACCWGGT	1 cut(s)	57
SfaNI	GCATC	2 cut(s)	235, 409
SfcI	CTRYAG	1 cut(s)	357
Sfr274I	CTCGAG	2 cut(s)	270, 503
SlaI	CTCGAG	2 cut(s)	270, 503
SmlI	CTYRAG	3 cut(s)	270, 398, 503
SmoI	CTYRAG	3 cut(s)	270, 398, 503
SsiI	CCGC	2 cut(s)	383, 612
StyD4I	CCNGG	1 cut(s)	57
StyI	CCWWGG	1 cut(s)	183
TaqI	TCGA	3 cut(s)	204, 271, 504
TatI	WGTACW	1 cut(s)	195
TauI	GCSGC	2 cut(s)	386, 614
TfiI	GAWTC	1 cut(s)	108
Tru1I	TTAA	4 cut(s)	261, 399, 543, 588
Tru9I	TTAA	4 cut(s)	261, 399, 543, 588
TscAI	CASTG	1 cut(s)	271
TseFI	GTSAC	3 cut(s)	151, 323, 598
TseI	GCWGC	2 cut(s)	356, 359
Tsp45I	GTSAC	3 cut(s)	151, 323, 598
TspDTI	ATGAA	1 cut(s)	168
TspGWI	ACGGA	1 cut(s)	138
TspRI	CASTG	1 cut(s)	271
Vha464I	CTTAAG	1 cut(s)	398
XcmI	CCANNNNNNNNNTGG	1 cut(s)	109
XhoI	CTCGAG	2 cut(s)	270, 503
XmnI	GAANNNNTTC	1 cut(s)	438

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.