MD09G1143900.v1.1

The proteasome is a multicatalytic proteinase complex which is characterized by its ability to cleave peptides with Arg, Phe, Tyr, Leu, and Glu adjacent to the leaving group at neutral or slightly basic pH

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr09
OG0008334
Physical Location & Seq
Forward (+)
11203594 .. 11204440
847 bp
Loading structure...
UTR
Exon/CDS
Intron
MD09G1143900.v1.1.491

Sequence Viewer

Length: 312 bp
ATGATAGCCGGACAACAATCTTTTCCCCTGAGGGTCGTCTCTACCAAGTTGAGTATGCAATGGAGGCCATTGGGAATGCGGGTAGCAATCGGAATACTGTCCAAAGACGGGGTTGTCTTGGTTGGTGAGAAGAAAGTCACATCCAAACTCCTCCAATCCTCAACTTCCACTGAGAAAATGTACATGATTGATGACCATGTCGCTTGTGCTGTGGCTGGCATAATGTCTGATGCCAACATTCTGATAAACACCGCTCGGGTCCAAGCTCAGCGCTACATGTTTGCATATCAGGAACCGATGCCTGTTGAGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005839 GO:0019773 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1905368 GO:1905369
KEGG Pathways
Metabolic & Signaling
ko03050 map03050
Pfam Domains
Protein Families
Proteasome Proteasome_A_N

Protein Analysis

104

Amino Acids

11.38

Weight (kDa)

9.25

Isoelectric Point (pI)

62.97

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Proteasome PF00227 29 - 103 6.3e-21 Proteasome subunit
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 113
AccBSI CCGCTC 1 cut(s) 254
AciI CCGC 2 cut(s) 79, 252
AfaI GTAC 1 cut(s) 182
AfeI AGCGCT 1 cut(s) 272
AfiI CCNNNNNNNGG 1 cut(s) 108
AflIII ACRYGT 1 cut(s) 276
AluBI AGCT 1 cut(s) 266
AluI AGCT 1 cut(s) 266
Alw26I GTCTC 1 cut(s) 43
Ama87I CYCGRG 1 cut(s) 255
Aor51HI AGCGCT 1 cut(s) 272
AoxI GGCC 1 cut(s) 65
AspLEI GCGC 1 cut(s) 273
AspS9I GGNCC 1 cut(s) 259
AsuHPI GGTGA 1 cut(s) 137
AvaI CYCGRG 1 cut(s) 255
AvaII GGWCC 1 cut(s) 259
AxyI CCTNAGG 1 cut(s) 29
BcoDI GTCTC 1 cut(s) 43
BfoI RGCGCY 1 cut(s) 274
BlpI GCTNAGC 1 cut(s) 267
Bme18I GGWCC 1 cut(s) 259
BmeT110I CYCGRG 1 cut(s) 255
BmgT120I GGNCC 1 cut(s) 259
BmiI GGNNCC 2 cut(s) 260, 294
BmsI GCATC 2 cut(s) 220, 288
Bpu1102I GCTNAGC 1 cut(s) 267
Bsc4I CCNNNNNNNGG 1 cut(s) 108
Bse21I CCTNAGG 1 cut(s) 29
Bse3DI GCAATG 1 cut(s) 65
BseGI GGATG 1 cut(s) 140
BseLI CCNNNNNNNGG 1 cut(s) 108
BseMI GCAATG 1 cut(s) 65
BseMII CTCAG 3 cut(s) 20, 162, 281
BseRI GAGGAG 1 cut(s) 140
BshFI GGCC 1 cut(s) 67
BsiHKCI CYCGRG 1 cut(s) 255
BsiSI CCGG 1 cut(s) 9
BslI CCNNNNNNNGG 1 cut(s) 108
BsmAI GTCTC 1 cut(s) 43
BsmBI CGTCTC 1 cut(s) 43
BsmI GAATGC 1 cut(s) 81
BsnI GGCC 1 cut(s) 67
BsoBI CYCGRG 1 cut(s) 255
Bsp1407I TGTACA 1 cut(s) 180
Bsp1720I GCTNAGC 1 cut(s) 267
BspACI CCGC 2 cut(s) 79, 252
BspANI GGCC 1 cut(s) 67
BspCNI CTCAG 3 cut(s) 21, 163, 280
BspLI GGNNCC 2 cut(s) 260, 294
BsrBI CCGCTC 1 cut(s) 254
BsrDI GCAATG 1 cut(s) 65
BsrGI TGTACA 1 cut(s) 180
Bst4CI ACNGT 1 cut(s) 99
BstAUI TGTACA 1 cut(s) 180
BstC8I GCNNGC 1 cut(s) 217
BstDEI CTNAG 3 cut(s) 29, 171, 267
BstF5I GGATG 1 cut(s) 140
BstH2I RGCGCY 1 cut(s) 274
BstHHI GCGC 1 cut(s) 273
BstMAI GTCTC 1 cut(s) 43
BstMWI GCNNNNNNNGC 1 cut(s) 64
BstNSI RCATGY 1 cut(s) 280
Bsu36I CCTNAGG 1 cut(s) 29
BsuRI GGCC 1 cut(s) 67
BtsCI GGATG 1 cut(s) 140
BtsIMutI CAGTG 1 cut(s) 168
Cac8I GCNNGC 1 cut(s) 217
CfoI GCGC 1 cut(s) 273
Cfr13I GGNCC 1 cut(s) 259
Csp6I GTAC 1 cut(s) 181
CviAII CATG 3 cut(s) 184, 197, 277
CviJI RGCY 4 cut(s) 8, 67, 215, 266
CviKI_1 RGCY 4 cut(s) 8, 67, 215, 266
CviQI GTAC 1 cut(s) 181
DdeI CTNAG 3 cut(s) 29, 171, 267
DrdI GACNNNNNNGTC 1 cut(s) 113
DseDI GACNNNNNNGTC 1 cut(s) 113
Eco47I GGWCC 1 cut(s) 259
Eco47III AGCGCT 1 cut(s) 272
Eco81I CCTNAGG 1 cut(s) 29
Eco88I CYCGRG 1 cut(s) 255
Esp3I CGTCTC 1 cut(s) 43
FaeI CATG 3 cut(s) 187, 200, 280
FaiI YATR 6 cut(s) 56, 185, 198, 221, 278, 286
FatI CATG 3 cut(s) 183, 196, 276
FauI CCCGC 1 cut(s) 72
FokI GGATG 1 cut(s) 127
GlaI GCGC 1 cut(s) 272
HaeII RGCGCY 1 cut(s) 274
HaeIII GGCC 1 cut(s) 67
HapII CCGG 1 cut(s) 9
HhaI GCGC 1 cut(s) 273
Hin1II CATG 3 cut(s) 187, 200, 280
Hin6I GCGC 1 cut(s) 271
HinP1I GCGC 1 cut(s) 271
HpaII CCGG 1 cut(s) 9
HphI GGTGA 1 cut(s) 137
Hpy188I TCNGA 3 cut(s) 92, 229, 243
Hpy188III TCNNGA 1 cut(s) 290
HpyCH4III ACNGT 1 cut(s) 99
HpyCH4V TGCA 2 cut(s) 58, 284
HpyF10VI GCNNNNNNNGC 1 cut(s) 64
HpyF3I CTNAG 3 cut(s) 29, 171, 267
Hsp92II CATG 3 cut(s) 187, 200, 280
HspAI GCGC 1 cut(s) 271
LpnPI CCDG 4 cut(s) 22, 41, 201, 275
LweI GCATC 2 cut(s) 220, 288
MaeIII GTNAC 1 cut(s) 136
MbiI CCGCTC 1 cut(s) 254
MboII GAAGA 1 cut(s) 142
MnlI CCTC 4 cut(s) 24, 57, 161, 169
MspI CCGG 1 cut(s) 9
Mva1269I GAATGC 1 cut(s) 81
MwoI GCNNNNNNNGC 1 cut(s) 64
NlaIII CATG 3 cut(s) 187, 200, 280
NlaIV GGNNCC 2 cut(s) 260, 294
NmuCI GTSAC 1 cut(s) 136
NspI RCATGY 1 cut(s) 280
PciI ACATGT 1 cut(s) 276
PctI GAATGC 1 cut(s) 81
PflFI GACNNNGTC 1 cut(s) 197
PscI ACATGT 1 cut(s) 276
PspN4I GGNNCC 2 cut(s) 260, 294
PspPI GGNCC 1 cut(s) 259
PsyI GACNNNGTC 1 cut(s) 197
RsaI GTAC 1 cut(s) 182
RsaNI GTAC 1 cut(s) 181
Sau96I GGNCC 1 cut(s) 259
SetI ASST 1 cut(s) 268
SfaNI GCATC 2 cut(s) 220, 288
SinI GGWCC 1 cut(s) 259
SsiI CCGC 2 cut(s) 79, 252
TaaI ACNGT 1 cut(s) 99
TatI WGTACW 1 cut(s) 180
TscAI CASTG 1 cut(s) 175
TseFI GTSAC 1 cut(s) 136
Tsp45I GTSAC 1 cut(s) 136
TspRI CASTG 1 cut(s) 175
Tth111I GACNNNGTC 1 cut(s) 197
VpaK11BI GGWCC 1 cut(s) 259
XceI RCATGY 1 cut(s) 280
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.