Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008334

Physical Location & Seq

Genomic Coordinates Forward (+)

7792345 .. 7795197

Gene Structure 2853 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g13020.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 750 bp

ATGTCTCGAAGGTATGATAGCCGTACGACAATCTTCTCCCCAGAAGGCCGTCTCTACCAAGTTGAGTATGCCATGGAAGCCATTGGAAATGCAGGAACTGCAATCGGGATATTGTCGAAAGATGGGGTTGTGTTAGTAGGTGAAAAGAAGGTGACCTCCAAGCTCCTTCAGACCTCTACATCAACTGAGAAGATGTACAAGATTGATGACCATGTTGCATGTGCTGTGGCCGGAATAATGTCTGACGCTAACATCCTTATCAACACTGCTAGGGTTCAAGCACAGCGTTATACATTTTCTTACCAGGAGCCAATGCCCGTTGAACAGCTAGTCCAATCTCTCTGTGACACCAAACAAGGCTACACACAGTTTGGTGGGCTCCGTCCATTTGGCGTTTCATTTCTATTTGCAGGCTGGGACAAGAATTATGGTTTCCAGCTTTACATGAGTGACCCAAGTGGAAACTATGGTGGCTGGAAGGCTGCAGCTATTGGGGCAAACAACCAGGCAGCACAGTCGATGCTTAAGCAGGACTACAAGGATGATATAACAAGAGAAGAGGCAGTTGAGCTTGCACTGAAGGTTCTCAGTAAGACAATGGACAGCACTAGTCTAACCTCAGACAAGCTTGAATTGGCTGAGGTTTTTGTATTGCCTTCTGGTAAGGTGAAGTACCAGGTTGTCTCACCAGATGCACTGAGCAAACTCTTGGTCAAGAGTGGGGTGACACAACCTGCAGCTGAGGCCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005839 GO:0019773 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

250

Amino Acids

27.19

Weight (kDa)

5.95

Isoelectric Point (pI)

46.4

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Proteasome_A_N	PF10584	5 - 27	2.3e-13	Proteasome subunit A N-terminal signature
Proteasome	PF00227	30 - 214	5.9e-61	Proteasome subunit

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22110 AT4G15165
fragaria_vesca	FvH4_3g13020
malus_domestica	MD05G1246200.v1.1 MD09G1143900.v1.1 MD10G1227000.v1.1
prunus_persica	Prupe.3G183900_v2.0.a1 Prupe.4G118100_v2.0.a1
pyrus_communis	pycom09g06330 pycom17g12310
rosa_chinensis	RchiOBHm_Chr5g0021211
rosa_laevigata	RLG00000032595
rosa_multiflora	Rmu_co8270601.1_g000001 Rmu_sc0002467.1_g000016 Rmu_sc0003392.1_g000019 Rmu_sc0019507.1_g000001 Rmu_sc0039744.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057290
rosa_rugosa	Rorug05G0065200
rosa_samantha	Rh5AG154100 Rh5CG167400 Rh5DG154200
rosa_wichuraiana	Rw5G013740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	742
AcoI	YGGCCR	1 cut(s)	228
AcuI	CTGAAG	2 cut(s)	152, 599
AfaI	GTAC	3 cut(s)	25, 197, 674
AflII	CTTAAG	1 cut(s)	524
AgsI	TTSAA	3 cut(s)	278, 323, 632
AhlI	ACTAGT	1 cut(s)	608
AjnI	CCWGG	3 cut(s)	303, 504, 675
AloI	GAACNNNNNNTCC	2 cut(s)	315, 347
AluBI	AGCT	7 cut(s)	163, 328, 439, 488, 571, 628, 740
AluI	AGCT	7 cut(s)	163, 328, 439, 488, 571, 628, 740
Alw26I	GTCTC	3 cut(s)	9, 56, 688
AlwNI	CAGNNNCTG	1 cut(s)	98
AoxI	GGCC	3 cut(s)	46, 228, 744
ApeKI	GCWGC	4 cut(s)	482, 485, 509, 737
ArsI	GACNNNNNNTTYG	2 cut(s)	696, 728
AsuHPI	GGTGA	5 cut(s)	152, 163, 678, 679, 736
BanII	GRGCYC	1 cut(s)	381
BbvCI	CCTCAGC	2 cut(s)	639, 741
BbvI	GCAGC	3 cut(s)	469, 497, 521
BccI	CCATC	1 cut(s)	116
BceAI	ACGGC	2 cut(s)	6, 33
BcgI	CGANNNNNNTGC	2 cut(s)	498, 532
BciT130I	CCWGG	3 cut(s)	305, 506, 677
BcoDI	GTCTC	3 cut(s)	9, 56, 688
BcuI	ACTAGT	1 cut(s)	608
BfaI	CTAG	4 cut(s)	270, 329, 609, 748
BfmI	CTRYAG	2 cut(s)	483, 735
BfrI	CTTAAG	1 cut(s)	524
BfuAI	ACCTGC	1 cut(s)	742
BisI	GCNGC	4 cut(s)	483, 486, 510, 738
BlsI	GCNGC	4 cut(s)	484, 487, 511, 739
Bme1390I	CCNGG	3 cut(s)	305, 506, 677
BmiI	GGNNCC	2 cut(s)	309, 380
BmrFI	CCNGG	3 cut(s)	305, 506, 677
BmsI	GCATC	2 cut(s)	510, 682
Bpu10I	CCTNAGC	2 cut(s)	639, 741
BsaJI	CCNNGG	1 cut(s)	72
BseBI	CCWGG	3 cut(s)	305, 506, 677
BseDI	CCNNGG	1 cut(s)	72
BseGI	GGATG	2 cut(s)	252, 547
BseMII	CTCAG	6 cut(s)	177, 601, 630, 633, 689, 732
BseXI	GCAGC	3 cut(s)	469, 497, 521
BseYI	CCCAGC	1 cut(s)	414
BshFI	GGCC	3 cut(s)	48, 230, 746
BsiSI	CCGG	1 cut(s)	231
BsiWI	CGTACG	1 cut(s)	23
BslFI	GGGAC	1 cut(s)	431
BsmAI	GTCTC	3 cut(s)	9, 56, 688
BsmBI	CGTCTC	1 cut(s)	56
BsmFI	GGGAC	1 cut(s)	431
BsnI	GGCC	3 cut(s)	48, 230, 746
Bsp1286I	GDGCHC	1 cut(s)	381
Bsp1407I	TGTACA	1 cut(s)	195
Bsp19I	CCATGG	1 cut(s)	72
BspANI	GGCC	3 cut(s)	48, 230, 746
BspCNI	CTCAG	6 cut(s)	178, 600, 631, 632, 690, 733
BspLI	GGNNCC	2 cut(s)	309, 380
BspMAI	CTGCAG	2 cut(s)	487, 739
BspMI	ACCTGC	1 cut(s)	742
BspTI	CTTAAG	1 cut(s)	524
BsrGI	TGTACA	1 cut(s)	195
BssECI	CCNNGG	1 cut(s)	72
BssT1I	CCWWGG	1 cut(s)	72
Bst2UI	CCWGG	3 cut(s)	305, 506, 677
Bst4CI	ACNGT	2 cut(s)	369, 516
Bst6I	CTCTTC	1 cut(s)	552
BstAFI	CTTAAG	1 cut(s)	524
BstAPI	GCANNNNNTGC	1 cut(s)	98
BstAUI	TGTACA	1 cut(s)	195
BstC8I	GCNNGC	2 cut(s)	412, 573
BstDEI	CTNAG	6 cut(s)	186, 587, 619, 639, 698, 741
BstDSI	CCRYGG	1 cut(s)	72
BstEII	GGTNACC	1 cut(s)	151
BstF5I	GGATG	2 cut(s)	252, 547
BstMAI	GTCTC	3 cut(s)	9, 56, 688
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 98, 494, 743
BstNI	CCWGG	3 cut(s)	305, 506, 677
BstNSI	RCATGY	1 cut(s)	222
BstPI	GGTNACC	1 cut(s)	151
BstSCI	CCNGG	3 cut(s)	303, 504, 675
BstSFI	CTRYAG	2 cut(s)	483, 735
BstV1I	GCAGC	3 cut(s)	469, 497, 521
BsuRI	GGCC	3 cut(s)	48, 230, 746
BtgI	CCRYGG	1 cut(s)	72
BtsCI	GGATG	2 cut(s)	252, 547
BtsI	GCAGTG	1 cut(s)	264
BtsIMutI	CAGTG	3 cut(s)	264, 575, 695
BveI	ACCTGC	1 cut(s)	742
Cac8I	GCNNGC	2 cut(s)	412, 573
CaiI	CAGNNNCTG	1 cut(s)	98
CseI	GACGC	1 cut(s)	254
CsiI	ACCWGGT	1 cut(s)	675
Csp6I	GTAC	3 cut(s)	24, 196, 673
CviAII	CATG	4 cut(s)	73, 212, 219, 445
CviQI	GTAC	3 cut(s)	24, 196, 673
DdeI	CTNAG	6 cut(s)	186, 587, 619, 639, 698, 741
EaeI	YGGCCR	1 cut(s)	228
Eam1104I	CTCTTC	1 cut(s)	552
EarI	CTCTTC	1 cut(s)	552
Eco130I	CCWWGG	1 cut(s)	72
Eco147I	AGGCCT	1 cut(s)	746
Eco24I	GRGCYC	1 cut(s)	381
Eco57I	CTGAAG	2 cut(s)	152, 599
Eco91I	GGTNACC	1 cut(s)	151
EcoO65I	GGTNACC	1 cut(s)	151
EcoRII	CCWGG	3 cut(s)	303, 504, 675
EcoT14I	CCWWGG	1 cut(s)	72
EcoT38I	GRGCYC	1 cut(s)	381
ErhI	CCWWGG	1 cut(s)	72
Esp3I	CGTCTC	1 cut(s)	56
FaeI	CATG	4 cut(s)	76, 215, 222, 448
FaqI	GGGAC	1 cut(s)	431
FatI	CATG	4 cut(s)	72, 211, 218, 444
Fnu4HI	GCNGC	4 cut(s)	483, 486, 510, 738
FokI	GGATG	2 cut(s)	239, 554
FriOI	GRGCYC	1 cut(s)	381
Fsp4HI	GCNGC	4 cut(s)	483, 486, 510, 738
FspBI	CTAG	4 cut(s)	270, 329, 609, 748
GluI	GCNGC	4 cut(s)	483, 486, 510, 738
GsaI	CCCAGC	1 cut(s)	418
HaeIII	GGCC	3 cut(s)	48, 230, 746
HapII	CCGG	1 cut(s)	231
HgaI	GACGC	1 cut(s)	254
Hin1II	CATG	4 cut(s)	76, 215, 222, 448
HindIII	AAGCTT	1 cut(s)	626
HpaII	CCGG	1 cut(s)	231
HphI	GGTGA	5 cut(s)	152, 163, 678, 679, 736
Hpy188I	TCNGA	3 cut(s)	171, 244, 622
Hpy188III	TCNNGA	3 cut(s)	6, 106, 715
HpyAV	CCTTC	7 cut(s)	3, 38, 142, 176, 472, 574, 666
HpyCH4III	ACNGT	2 cut(s)	369, 516
HpyCH4V	TGCA	8 cut(s)	92, 101, 218, 410, 485, 575, 695, 737
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 98, 494, 743
HpyF3I	CTNAG	6 cut(s)	186, 587, 619, 639, 698, 741
Hsp92II	CATG	4 cut(s)	76, 215, 222, 448
LmnI	GCTCC	3 cut(s)	168, 307, 384
Lsp1109I	GCAGC	3 cut(s)	469, 497, 521
LweI	GCATC	2 cut(s)	510, 682
MabI	ACCWGGT	1 cut(s)	675
MaeI	CTAG	4 cut(s)	270, 329, 609, 748
MaeIII	GTNAC	4 cut(s)	151, 344, 449, 724
MboII	GAAGA	3 cut(s)	25, 202, 569
MhlI	GDGCHC	1 cut(s)	381
MluCI	AATT	2 cut(s)	424, 632
MnlI	CCTC	6 cut(s)	166, 184, 553, 628, 634, 736
MseI	TTAA	1 cut(s)	525
MspA1I	CMGCKG	1 cut(s)	740
MspCI	CTTAAG	1 cut(s)	524
MspI	CCGG	1 cut(s)	231
MspR9I	CCNGG	3 cut(s)	305, 506, 677
MvaI	CCWGG	3 cut(s)	305, 506, 677
MwoI	GCNNNNNNNGC	4 cut(s)	77, 98, 494, 743
NcoI	CCATGG	1 cut(s)	72
NlaIII	CATG	4 cut(s)	76, 215, 222, 448
NlaIV	GGNNCC	2 cut(s)	309, 380
NmuCI	GTSAC	4 cut(s)	151, 344, 449, 724
NspI	RCATGY	1 cut(s)	222
PceI	AGGCCT	1 cut(s)	746
Pfl23II	CGTACG	1 cut(s)	23
PkrI	GCNGC	4 cut(s)	484, 487, 511, 739
Psp6I	CCWGG	3 cut(s)	303, 504, 675
PspEI	GGTNACC	1 cut(s)	151
PspFI	CCCAGC	1 cut(s)	414
PspGI	CCWGG	3 cut(s)	303, 504, 675
PspLI	CGTACG	1 cut(s)	23
PspN4I	GGNNCC	2 cut(s)	309, 380
PstI	CTGCAG	2 cut(s)	487, 739
PstNI	CAGNNNCTG	1 cut(s)	98
PvuII	CAGCTG	1 cut(s)	740
RsaI	GTAC	3 cut(s)	25, 197, 674
RsaNI	GTAC	3 cut(s)	24, 196, 673
SaqAI	TTAA	1 cut(s)	525
SatI	GCNGC	4 cut(s)	483, 486, 510, 738
ScrFI	CCNGG	3 cut(s)	305, 506, 677
SduI	GDGCHC	1 cut(s)	381
SexAI	ACCWGGT	1 cut(s)	675
SfaNI	GCATC	2 cut(s)	510, 682
SfcI	CTRYAG	2 cut(s)	483, 735
SmlI	CTYRAG	1 cut(s)	524
SmoI	CTYRAG	1 cut(s)	524
SpeI	ACTAGT	1 cut(s)	608
Sse9I	AATT	2 cut(s)	424, 632
SseBI	AGGCCT	1 cut(s)	746
SspMI	CTAG	4 cut(s)	270, 329, 609, 748
StuI	AGGCCT	1 cut(s)	746
StyD4I	CCNGG	3 cut(s)	303, 504, 675
StyI	CCWWGG	1 cut(s)	72
TaaI	ACNGT	2 cut(s)	369, 516
TaqI	TCGA	3 cut(s)	7, 116, 518
TasI	AATT	2 cut(s)	424, 632
TatI	WGTACW	1 cut(s)	195
Tru1I	TTAA	1 cut(s)	525
Tru9I	TTAA	1 cut(s)	525
TscAI	CASTG	3 cut(s)	271, 582, 702
TseFI	GTSAC	4 cut(s)	151, 344, 449, 724
TseI	GCWGC	4 cut(s)	482, 485, 509, 737
Tsp45I	GTSAC	4 cut(s)	151, 344, 449, 724
TspDTI	ATGAA	1 cut(s)	387
TspGWI	ACGGA	1 cut(s)	371
TspRI	CASTG	3 cut(s)	271, 582, 702
Vha464I	CTTAAG	1 cut(s)	524
XceI	RCATGY	1 cut(s)	222
XspI	CTAG	4 cut(s)	270, 329, 609, 748

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.