Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0039744.1

Orthogroup ID

OG0008334

Physical Location & Seq

Genomic Coordinates Reverse (-)

2 .. 159

Gene Structure 158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0039744.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 158 bp

atgagtagcataggaacaggctacgatctctcagtcaccacattttctcctgatggccgtgtattccagattgagtacgcaaccaaagctgttgacaactccgggactgttattgggatcaaatgcaaggatggagttgttatgggtgtggaaaagct

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005773 GO:0005774 GO:0005829 GO:0005839 GO:0006950 GO:0008150 GO:0009266 GO:0009409 GO:0009628 GO:0010035 GO:0010038 GO:0016020 GO:0019773 GO:0031090 GO:0032991 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044422 GO:0044424 GO:0044437 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:0098588 GO:0098805 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

53

Amino Acids

5.59

Weight (kDa)

4.93

Isoelectric Point (pI)

32.51

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22110 AT4G15165
fragaria_vesca	FvH4_3g13020
malus_domestica	MD05G1246200.v1.1 MD09G1143900.v1.1 MD10G1227000.v1.1
prunus_persica	Prupe.3G183900_v2.0.a1 Prupe.4G118100_v2.0.a1
pyrus_communis	pycom09g06330 pycom17g12310
rosa_chinensis	RchiOBHm_Chr5g0021211
rosa_laevigata	RLG00000032595
rosa_multiflora	Rmu_co8270601.1_g000001 Rmu_sc0002467.1_g000016 Rmu_sc0003392.1_g000019 Rmu_sc0019507.1_g000001 Rmu_sc0039744.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057290
rosa_rugosa	Rorug05G0065200
rosa_samantha	Rh5AG154100 Rh5CG167400 Rh5DG154200
rosa_wichuraiana	Rw5G013740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AclWI	GGATC	1 cut(s)	125
AcoI	YGGCCR	1 cut(s)	55
AfaI	GTAC	1 cut(s)	77
AluBI	AGCT	2 cut(s)	89, 157
AluI	AGCT	2 cut(s)	89, 157
AlwI	GGATC	1 cut(s)	125
AoxI	GGCC	1 cut(s)	55
AsuC2I	CCSGG	1 cut(s)	103
AsuHPI	GGTGA	1 cut(s)	28
BccI	CCATC	2 cut(s)	47, 125
BceAI	ACGGC	1 cut(s)	42
BcnI	CCSGG	1 cut(s)	103
Bme1390I	CCNGG	1 cut(s)	103
BmrFI	CCNGG	1 cut(s)	103
BpuMI	CCSGG	1 cut(s)	103
BsaXI	ACNNNNNCTCC	2 cut(s)	31, 61
BseGI	GGATG	1 cut(s)	136
BseMII	CTCAG	1 cut(s)	45
BshFI	GGCC	1 cut(s)	57
BsiSI	CCGG	1 cut(s)	102
BslFI	GGGAC	1 cut(s)	118
BsmFI	GGGAC	1 cut(s)	118
BsnI	GGCC	1 cut(s)	57
Bsp143I	GATC	2 cut(s)	25, 117
BspANI	GGCC	1 cut(s)	57
BspCNI	CTCAG	1 cut(s)	44
BspPI	GGATC	1 cut(s)	125
BssMI	GATC	2 cut(s)	25, 117
Bst4CI	ACNGT	1 cut(s)	109
BstDEI	CTNAG	1 cut(s)	31
BstF5I	GGATG	1 cut(s)	136
BstKTI	GATC	2 cut(s)	28, 120
BstMBI	GATC	2 cut(s)	25, 117
BstMWI	GCNNNNNNNGC	1 cut(s)	86
BstSCI	CCNGG	1 cut(s)	101
BsuRI	GGCC	1 cut(s)	57
BtsCI	GGATG	1 cut(s)	136
Csp6I	GTAC	1 cut(s)	76
CviJI	RGCY	4 cut(s)	21, 57, 89, 157
CviKI_1	RGCY	4 cut(s)	21, 57, 89, 157
CviQI	GTAC	1 cut(s)	76
DdeI	CTNAG	1 cut(s)	31
DpnI	GATC	2 cut(s)	27, 119
DpnII	GATC	2 cut(s)	25, 117
EaeI	YGGCCR	1 cut(s)	55
FaiI	YATR	2 cut(s)	11, 143
FaqI	GGGAC	1 cut(s)	118
FokI	GGATG	1 cut(s)	143
HaeIII	GGCC	1 cut(s)	57
HapII	CCGG	1 cut(s)	102
HincII	GTYRAC	1 cut(s)	94
HindII	GTYRAC	1 cut(s)	94
HpaII	CCGG	1 cut(s)	102
HphI	GGTGA	1 cut(s)	28
Hpy166II	GTNNAC	1 cut(s)	94
Hpy188III	TCNNGA	2 cut(s)	50, 67
Hpy8I	GTNNAC	1 cut(s)	94
HpyCH4III	ACNGT	1 cut(s)	109
HpyCH4V	TGCA	1 cut(s)	126
HpyF10VI	GCNNNNNNNGC	1 cut(s)	86
HpyF3I	CTNAG	1 cut(s)	31
Kzo9I	GATC	2 cut(s)	25, 117
LpnPI	CCDG	4 cut(s)	3, 63, 80, 115
MaeIII	GTNAC	1 cut(s)	34
MalI	GATC	2 cut(s)	27, 119
MboI	GATC	2 cut(s)	25, 117
MspI	CCGG	1 cut(s)	102
MspR9I	CCNGG	1 cut(s)	103
MwoI	GCNNNNNNNGC	1 cut(s)	86
NciI	CCSGG	1 cut(s)	103
NdeII	GATC	2 cut(s)	25, 117
NmuCI	GTSAC	1 cut(s)	34
PfoI	TCCNGGA	1 cut(s)	101
RsaI	GTAC	1 cut(s)	77
RsaNI	GTAC	1 cut(s)	76
Sau3AI	GATC	2 cut(s)	25, 117
ScrFI	CCNGG	1 cut(s)	103
SetI	ASST	1 cut(s)	91
SgeI	CNNG	7 cut(s)	30, 62, 71, 79, 114, 115, 139
StyD4I	CCNGG	1 cut(s)	101
TaaI	ACNGT	1 cut(s)	109
TseFI	GTSAC	1 cut(s)	34
Tsp45I	GTSAC	1 cut(s)	34

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.