Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0008334

Physical Location & Seq

Genomic Coordinates Forward (+)

6398752 .. 6402231

Gene Structure 3480 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G118100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 753 bp

ATGTCTCGAAGGTATGACAGCCGCACGACGATCTTCTCTCCTGAAGGTCGTCTCTACCAGGTTGAGTATGCTATGGAGGCCATTGGAAATGCAGGGACTGCAATTGGGATATTGTCAAAAGATGGAGTTGTGTTAGTAGGTGAAAAGAAAGTGACTTCCAAGCTCCTTCAGACCTCTACATCCACTGAGAAGATGTACAAGATTGATGACCATGTCGCATGTGCAGTGGCCGGGATAATGTCAGATGCCAACATCCTTATCAACACAGCTAGGGTCCAAGCACAGCGCTATACATTTGCTTACCAAGAGCCAATGCCCGTTGAACAACTAGTCCAGTCTCTCTGTGACACCAAACAAGGTTACACGCAGTTTGGTGGGCTCCGTCCATTTGGTGTTTCGTTTCTATTTGCAGGTTGGGACAAAAACTATGGTTTTCAACTTTACATGAGTGACCCAAGTGGAAACTATGGTGGTTGGAAGGCTGCAGCCATTGGGGCAAACAATCAGGCAGCACAATCAATGCTGAAGCAGGACTACAAGGATGAAATAACAAGAGAAGAGGCAGTTCAGCTTGCACTGAAGGTGCTCAGCAAGACAATGGACAGCACGAGTCTGACTTCCGATAAGCTTGAGTTGGCTGAAGTCTTCGTCTTGCCTTCAGGTAAAGTGAAGTACCAGGTGTGCTCACCAGATGCACTGAGCAAACTGTTGGTGAAGAGTGGAGTGACACAGCCAGCTGCTGAGGCCTCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000502 GO:0005575 GO:0005622 GO:0005623 GO:0005839 GO:0019773 GO:0032991 GO:0044424 GO:0044464 GO:1902494 GO:1905368 GO:1905369

KEGG Pathways

Metabolic & Signaling

ko03050 map03050

Pfam Domains

Protein Families

Proteasome Proteasome_A_N

Protein Analysis

251

Amino Acids

27.28

Weight (kDa)

6.61

Isoelectric Point (pI)

47.02

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008334)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22110 AT4G15165
fragaria_vesca	FvH4_3g13020
malus_domestica	MD05G1246200.v1.1 MD09G1143900.v1.1 MD10G1227000.v1.1
prunus_persica	Prupe.3G183900_v2.0.a1 Prupe.4G118100_v2.0.a1
pyrus_communis	pycom09g06330 pycom17g12310
rosa_chinensis	RchiOBHm_Chr5g0021211
rosa_laevigata	RLG00000032595
rosa_multiflora	Rmu_co8270601.1_g000001 Rmu_sc0002467.1_g000016 Rmu_sc0003392.1_g000019 Rmu_sc0019507.1_g000001 Rmu_sc0039744.1_g000001
rosa_roxburghii	Rroxscaffold_1G00057290
rosa_rugosa	Rorug05G0065200
rosa_samantha	Rh5AG154100 Rh5CG167400 Rh5DG154200
rosa_wichuraiana	Rw5G013740

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	401
AciI	CCGC	1 cut(s)	22
AcoI	YGGCCR	1 cut(s)	228
AcuI	CTGAAG	6 cut(s)	63, 152, 545, 599, 642, 660
AfaI	GTAC	2 cut(s)	197, 674
AfeI	AGCGCT	1 cut(s)	287
AgsI	TTSAA	2 cut(s)	323, 437
AhlI	ACTAGT	1 cut(s)	328
AjnI	CCWGG	2 cut(s)	57, 675
AloI	GAACNNNNNNTCC	2 cut(s)	315, 347
AluBI	AGCT	5 cut(s)	163, 269, 571, 628, 737
AluI	AGCT	5 cut(s)	163, 269, 571, 628, 737
Alw21I	GWGCWC	2 cut(s)	588, 686
Alw26I	GTCTC	3 cut(s)	9, 56, 342
AlwNI	CAGNNNCTG	2 cut(s)	98, 740
Aor51HI	AGCGCT	1 cut(s)	287
AoxI	GGCC	3 cut(s)	78, 228, 744
ApeKI	GCWGC	4 cut(s)	482, 485, 509, 737
AspLEI	GCGC	1 cut(s)	288
AspS9I	GGNCC	1 cut(s)	274
AsuC2I	CCSGG	1 cut(s)	232
AsuHPI	GGTGA	3 cut(s)	152, 678, 724
AvaII	GGWCC	1 cut(s)	274
BanII	GRGCYC	1 cut(s)	381
BarI	GAAGNNNNNNTAC	2 cut(s)	518, 550
BauI	CACGAG	1 cut(s)	607
BbsI	GAAGAC	1 cut(s)	637
Bbv12I	GWGCWC	2 cut(s)	588, 686
BbvCI	CCTCAGC	1 cut(s)	741
BbvI	GCAGC	4 cut(s)	469, 497, 521, 724
BccI	CCATC	1 cut(s)	116
BciT130I	CCWGG	2 cut(s)	59, 677
BcnI	CCSGG	1 cut(s)	232
BcoDI	GTCTC	3 cut(s)	9, 56, 342
BcuI	ACTAGT	1 cut(s)	328
BfaI	CTAG	2 cut(s)	270, 329
BfmI	CTRYAG	1 cut(s)	483
BfoI	RGCGCY	1 cut(s)	289
BfuAI	ACCTGC	1 cut(s)	401
BglI	GCCNNNNNGGC	1 cut(s)	494
BisI	GCNGC	5 cut(s)	22, 483, 486, 510, 738
BlpI	GCTNAGC	1 cut(s)	587
BlsI	GCNGC	5 cut(s)	23, 484, 487, 511, 739
Bme1390I	CCNGG	3 cut(s)	59, 232, 677
Bme18I	GGWCC	1 cut(s)	274
BmgT120I	GGNCC	1 cut(s)	274
BmiI	GGNNCC	2 cut(s)	275, 380
BmrFI	CCNGG	3 cut(s)	59, 232, 677
BmsI	GCATC	2 cut(s)	235, 682
BpiI	GAAGAC	1 cut(s)	637
Bpu10I	CCTNAGC	1 cut(s)	741
Bpu1102I	GCTNAGC	1 cut(s)	587
BpuEI	CTTGAG	1 cut(s)	650
BpuMI	CCSGG	1 cut(s)	232
Bse1I	ACTGG	1 cut(s)	334
BseBI	CCWGG	2 cut(s)	59, 677
BseGI	GGATG	3 cut(s)	179, 252, 547
BseMII	CTCAG	4 cut(s)	177, 601, 689, 732
BseNI	ACTGG	1 cut(s)	334
BseXI	GCAGC	4 cut(s)	469, 497, 521, 724
BsgI	GTGCAG	1 cut(s)	243
BshFI	GGCC	3 cut(s)	80, 230, 746
BsiHKAI	GWGCWC	2 cut(s)	588, 686
BsiSI	CCGG	1 cut(s)	231
BslFI	GGGAC	2 cut(s)	109, 431
BsmAI	GTCTC	3 cut(s)	9, 56, 342
BsmBI	CGTCTC	1 cut(s)	56
BsmFI	GGGAC	2 cut(s)	109, 431
BsnI	GGCC	3 cut(s)	80, 230, 746
Bsp1286I	GDGCHC	3 cut(s)	381, 588, 686
Bsp1407I	TGTACA	1 cut(s)	195
Bsp143I	GATC	1 cut(s)	30
Bsp1720I	GCTNAGC	1 cut(s)	587
BspACI	CCGC	1 cut(s)	22
BspANI	GGCC	3 cut(s)	80, 230, 746
BspCNI	CTCAG	4 cut(s)	178, 600, 690, 733
BspLI	GGNNCC	2 cut(s)	275, 380
BspMAI	CTGCAG	1 cut(s)	487
BspMI	ACCTGC	1 cut(s)	401
BsrGI	TGTACA	1 cut(s)	195
BsrI	ACTGG	1 cut(s)	334
BssMI	GATC	1 cut(s)	30
BssSI	CACGAG	1 cut(s)	607
Bst2BI	CACGAG	1 cut(s)	607
Bst2UI	CCWGG	2 cut(s)	59, 677
Bst4CI	ACNGT	1 cut(s)	708
Bst6I	CTCTTC	2 cut(s)	552, 710
BstAPI	GCANNNNNTGC	1 cut(s)	98
BstAUI	TGTACA	1 cut(s)	195
BstC8I	GCNNGC	2 cut(s)	573, 735
BstDEI	CTNAG	4 cut(s)	186, 587, 698, 741
BstF5I	GGATG	3 cut(s)	179, 252, 547
BstH2I	RGCGCY	1 cut(s)	289
BstHHI	GCGC	1 cut(s)	288
BstKTI	GATC	1 cut(s)	33
BstMAI	GTCTC	3 cut(s)	9, 56, 342
BstMBI	GATC	1 cut(s)	30
BstMWI	GCNNNNNNNGC	4 cut(s)	77, 98, 494, 743
BstNI	CCWGG	2 cut(s)	59, 677
BstNSI	RCATGY	1 cut(s)	222
BstSCI	CCNGG	3 cut(s)	57, 230, 675
BstSFI	CTRYAG	1 cut(s)	483
BstV1I	GCAGC	4 cut(s)	469, 497, 521, 724
BstV2I	GAAGAC	1 cut(s)	637
BsuRI	GGCC	3 cut(s)	80, 230, 746
BtsCI	GGATG	3 cut(s)	179, 252, 547
BtsI	GCAGTG	1 cut(s)	231
BtsIMutI	CAGTG	4 cut(s)	183, 231, 575, 695
BveI	ACCTGC	1 cut(s)	401
Cac8I	GCNNGC	2 cut(s)	573, 735
CaiI	CAGNNNCTG	2 cut(s)	98, 740
CfoI	GCGC	1 cut(s)	288
Cfr13I	GGNCC	1 cut(s)	274
CsiI	ACCWGGT	2 cut(s)	57, 675
Csp6I	GTAC	2 cut(s)	196, 673
CviAII	CATG	3 cut(s)	212, 219, 445
CviQI	GTAC	2 cut(s)	196, 673
DdeI	CTNAG	4 cut(s)	186, 587, 698, 741
DpnI	GATC	1 cut(s)	32
DpnII	GATC	1 cut(s)	30
EaeI	YGGCCR	1 cut(s)	228
Eam1104I	CTCTTC	2 cut(s)	552, 710
EarI	CTCTTC	2 cut(s)	552, 710
Eco147I	AGGCCT	1 cut(s)	746
Eco24I	GRGCYC	1 cut(s)	381
Eco47I	GGWCC	1 cut(s)	274
Eco47III	AGCGCT	1 cut(s)	287
Eco57I	CTGAAG	6 cut(s)	63, 152, 545, 599, 642, 660
EcoRII	CCWGG	2 cut(s)	57, 675
EcoT38I	GRGCYC	1 cut(s)	381
Esp3I	CGTCTC	1 cut(s)	56
FaeI	CATG	3 cut(s)	215, 222, 448
FaiI	YATR	9 cut(s)	15, 69, 74, 213, 220, 291, 429, 446, 468
FaqI	GGGAC	2 cut(s)	109, 431
FatI	CATG	3 cut(s)	211, 218, 444
Fnu4HI	GCNGC	5 cut(s)	22, 483, 486, 510, 738
FokI	GGATG	3 cut(s)	166, 239, 554
FriOI	GRGCYC	1 cut(s)	381
Fsp4HI	GCNGC	5 cut(s)	22, 483, 486, 510, 738
FspBI	CTAG	2 cut(s)	270, 329
GlaI	GCGC	1 cut(s)	287
GluI	GCNGC	5 cut(s)	22, 483, 486, 510, 738
HaeII	RGCGCY	1 cut(s)	289
HaeIII	GGCC	3 cut(s)	80, 230, 746
HapII	CCGG	1 cut(s)	231
HhaI	GCGC	1 cut(s)	288
Hin1II	CATG	3 cut(s)	215, 222, 448
Hin6I	GCGC	1 cut(s)	286
HinP1I	GCGC	1 cut(s)	286
HindIII	AAGCTT	1 cut(s)	626
HinfI	GANTC	1 cut(s)	610
HpaII	CCGG	1 cut(s)	231
HphI	GGTGA	3 cut(s)	152, 678, 724
Hpy188I	TCNGA	4 cut(s)	171, 244, 615, 622
Hpy188III	TCNNGA	2 cut(s)	6, 41
Hpy99I	CGWCG	1 cut(s)	31
HpyAV	CCTTC	6 cut(s)	3, 38, 176, 472, 574, 666
HpyCH4III	ACNGT	1 cut(s)	708
HpyCH4V	TGCA	7 cut(s)	92, 101, 224, 410, 485, 575, 695
HpyF10VI	GCNNNNNNNGC	4 cut(s)	77, 98, 494, 743
HpyF3I	CTNAG	4 cut(s)	186, 587, 698, 741
Hsp92II	CATG	3 cut(s)	215, 222, 448
HspAI	GCGC	1 cut(s)	286
Kzo9I	GATC	1 cut(s)	30
LmnI	GCTCC	2 cut(s)	168, 384
Lsp1109I	GCAGC	4 cut(s)	469, 497, 521, 724
LweI	GCATC	2 cut(s)	235, 682
MabI	ACCWGGT	2 cut(s)	57, 675
MaeI	CTAG	2 cut(s)	270, 329
MaeIII	GTNAC	5 cut(s)	151, 344, 359, 449, 724
MalI	GATC	1 cut(s)	32
MboI	GATC	1 cut(s)	30
MboII	GAAGA	5 cut(s)	25, 202, 569, 637, 727
MfeI	CAATTG	1 cut(s)	102
MhlI	GDGCHC	3 cut(s)	381, 588, 686
MluCI	AATT	1 cut(s)	102
MlyI	GAGTC	1 cut(s)	619
MmeI	TCCRAC	1 cut(s)	455
MnlI	CCTC	4 cut(s)	70, 184, 553, 736
MseI	TTAA	1 cut(s)	751
MspA1I	CMGCKG	1 cut(s)	737
MspI	CCGG	1 cut(s)	231
MspR9I	CCNGG	3 cut(s)	59, 232, 677
MunI	CAATTG	1 cut(s)	102
MvaI	CCWGG	2 cut(s)	59, 677
MwoI	GCNNNNNNNGC	4 cut(s)	77, 98, 494, 743
NciI	CCSGG	1 cut(s)	232
NdeII	GATC	1 cut(s)	30
NlaIII	CATG	3 cut(s)	215, 222, 448
NlaIV	GGNNCC	2 cut(s)	275, 380
NmuCI	GTSAC	4 cut(s)	151, 344, 449, 724
NspI	RCATGY	1 cut(s)	222
PceI	AGGCCT	1 cut(s)	746
PflFI	GACNNNGTC	1 cut(s)	212
PkrI	GCNGC	5 cut(s)	23, 484, 487, 511, 739
PleI	GAGTC	1 cut(s)	618
PpsI	GAGTC	1 cut(s)	618
Psp6I	CCWGG	2 cut(s)	57, 675
PspGI	CCWGG	2 cut(s)	57, 675
PspN4I	GGNNCC	2 cut(s)	275, 380
PspPI	GGNCC	1 cut(s)	274
PstI	CTGCAG	1 cut(s)	487
PstNI	CAGNNNCTG	2 cut(s)	98, 740
PsyI	GACNNNGTC	1 cut(s)	212
PvuII	CAGCTG	1 cut(s)	737
RsaI	GTAC	2 cut(s)	197, 674
RsaNI	GTAC	2 cut(s)	196, 673
SaqAI	TTAA	1 cut(s)	751
SatI	GCNGC	5 cut(s)	22, 483, 486, 510, 738
Sau3AI	GATC	1 cut(s)	30
Sau96I	GGNCC	1 cut(s)	274
SchI	GAGTC	1 cut(s)	619
ScrFI	CCNGG	3 cut(s)	59, 232, 677
SduI	GDGCHC	3 cut(s)	381, 588, 686
SexAI	ACCWGGT	2 cut(s)	57, 675
SfaNI	GCATC	2 cut(s)	235, 682
SfcI	CTRYAG	1 cut(s)	483
SinI	GGWCC	1 cut(s)	274
SmlI	CTYRAG	1 cut(s)	629
SmoI	CTYRAG	1 cut(s)	629
SpeI	ACTAGT	1 cut(s)	328
Sse9I	AATT	1 cut(s)	102
SseBI	AGGCCT	1 cut(s)	746
SsiI	CCGC	1 cut(s)	22
SspMI	CTAG	2 cut(s)	270, 329
StuI	AGGCCT	1 cut(s)	746
StyD4I	CCNGG	3 cut(s)	57, 230, 675
TaaI	ACNGT	1 cut(s)	708
TaqI	TCGA	1 cut(s)	7
TasI	AATT	1 cut(s)	102
TatI	WGTACW	1 cut(s)	195
TauI	GCSGC	1 cut(s)	24
Tru1I	TTAA	1 cut(s)	751
Tru9I	TTAA	1 cut(s)	751
TscAI	CASTG	4 cut(s)	190, 231, 582, 702
TseFI	GTSAC	4 cut(s)	151, 344, 449, 724
TseI	GCWGC	4 cut(s)	482, 485, 509, 737
Tsp45I	GTSAC	4 cut(s)	151, 344, 449, 724
TspDTI	ATGAA	1 cut(s)	558
TspGWI	ACGGA	1 cut(s)	371
TspRI	CASTG	4 cut(s)	190, 231, 582, 702
Tth111I	GACNNNGTC	1 cut(s)	212
VpaK11BI	GGWCC	1 cut(s)	274
XceI	RCATGY	1 cut(s)	222
XspI	CTAG	2 cut(s)	270, 329

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.