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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G22380 AT3G22380 AT3G22380 |
| fragaria_vesca | FvH4_4g15230 FvH4_4g15230 |
| malus_domestica | MD13G1190800.v1.1 MD16G1127600.v1.1 MD16G1191200.v1.1 |
| prunus_persica | Prupe.1G011200_v2.0.a1 Prupe.1G011200_v2.0.a1 |
| pyrus_communis | pycom07g23630 pycom13g16390 pycom16g16090 |
| rosa_chinensis | RchiOBHm_Chr4g0416621 |
| rosa_laevigata | RLG00000007965 |
| rosa_multiflora | Rmu_co8150674.1_g000001 Rmu_sc0003722.1_g000056 |
| rosa_roxburghii | Rroxscaffold_5G00360500 |
| rosa_rugosa | Rorug04G0143400 Rorug04G0143500 |
| rosa_samantha | Rh4AG205900 Rh4BG203300 Rh4CG216700 Rh4DG202800 |
| rosa_wichuraiana | Rw4G017420 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 3724, 4450 |
| AatII | GACGTC | 1 cut(s) | 4064 |
| Acc36I | ACCTGC | 5 cut(s) | 2545, 3040, 3724, 3988, 4450 |
| AccB1I | GGYRCC | 4 cut(s) | 559, 1480, 1873, 2420 |
| AccB7I | CCANNNNNTGG | 2 cut(s) | 2075, 4301 |
| AccII | CGCG | 1 cut(s) | 1191 |
| AcoI | YGGCCR | 2 cut(s) | 2478, 2932 |
| AcsI | RAATTY | 3 cut(s) | 1105, 2167, 2818 |
| AcuI | CTGAAG | 6 cut(s) | 1389, 1680, 2105, 2422, 3615, 4461 |
| AcyI | GRCGYC | 5 cut(s) | 560, 671, 1481, 4061, 4202 |
| AfaI | GTAC | 8 cut(s) | 30, 646, 679, 912, 1169, 2474, 3602, 4002 |
| AflII | CTTAAG | 1 cut(s) | 1592 |
| AflIII | ACRYGT | 4 cut(s) | 1159, 1189, 2521, 3144 |
| AgsI | TTSAA | 8 cut(s) | 382, 1227, 2009, 2159, 2225, 2818, 3057, 3115 |
| AjiI | CACGTC | 2 cut(s) | 585, 3519 |
| AjnI | CCWGG | 9 cut(s) | 1834, 1843, 2239, 2475, 2554, 2992, 3821, 4020, 4573 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 2362, 2394 |
| AleI | CACNNNNGTG | 1 cut(s) | 1565 |
| Alw21I | GWGCWC | 4 cut(s) | 1265, 2533, 2554, 4262 |
| Alw44I | GTGCAC | 1 cut(s) | 2529 |
| AlwNI | CAGNNNCTG | 5 cut(s) | 908, 2476, 3638, 3884, 4442 |
| Ama87I | CYCGRG | 1 cut(s) | 1041 |
| ApaI | GGGCCC | 1 cut(s) | 3666 |
| ApaLI | GTGCAC | 1 cut(s) | 2529 |
| ApoI | RAATTY | 3 cut(s) | 1105, 2167, 2818 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 1029, 1061 |
| AseI | ATTAAT | 2 cut(s) | 2216, 2763 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 536, 2039, 2143 |
| AspLEI | GCGC | 2 cut(s) | 562, 1483 |
| AsuC2I | CCSGG | 4 cut(s) | 61, 2457, 2906, 3087 |
| AsuNHI | GCTAGC | 1 cut(s) | 1805 |
| AvaI | CYCGRG | 1 cut(s) | 1041 |
| AvaII | GGWCC | 6 cut(s) | 110, 365, 2079, 2267, 2366, 4229 |
| AxyI | CCTNAGG | 1 cut(s) | 3318 |
| BaeGI | GKGCMC | 3 cut(s) | 2425, 2533, 3666 |
| BalI | TGGCCA | 2 cut(s) | 2480, 2934 |
| BamHI | GGATCC | 2 cut(s) | 1268, 4265 |
| BanI | GGYRCC | 4 cut(s) | 559, 1480, 1873, 2420 |
| BanII | GRGCYC | 3 cut(s) | 1265, 3666, 4262 |
| BauI | CACGAG | 2 cut(s) | 3436, 4255 |
| BbsI | GAAGAC | 1 cut(s) | 1179 |
| Bbv12I | GWGCWC | 4 cut(s) | 1265, 2533, 2554, 4262 |
| BbvCI | CCTCAGC | 1 cut(s) | 2716 |
| BceAI | ACGGC | 6 cut(s) | 269, 826, 847, 2512, 3912, 4156 |
| BciT130I | CCWGG | 9 cut(s) | 1836, 1845, 2241, 2477, 2556, 2994, 3823, 4022, 4575 |
| BciVI | GTATCC | 2 cut(s) | 1859, 1894 |
| BclI | TGATCA | 2 cut(s) | 1720, 3694 |
| BcnI | CCSGG | 4 cut(s) | 61, 2457, 2906, 3087 |
| BfaI | CTAG | 8 cut(s) | 21, 293, 624, 1097, 1110, 1647, 1806, 3263 |
| BfmI | CTRYAG | 7 cut(s) | 1026, 1920, 2049, 2735, 2871, 4307, 4509 |
| BfoI | RGCGCY | 2 cut(s) | 563, 1484 |
| BfrI | CTTAAG | 1 cut(s) | 1592 |
| BfuAI | ACCTGC | 5 cut(s) | 2545, 3040, 3724, 3988, 4450 |
| BfuI | GTATCC | 2 cut(s) | 1859, 1894 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 1840, 4499 |
| BglII | AGATCT | 1 cut(s) | 1471 |
| BlpI | GCTNAGC | 1 cut(s) | 2062 |
| BmcAI | AGTACT | 1 cut(s) | 679 |
| Bme18I | GGWCC | 6 cut(s) | 110, 365, 2079, 2267, 2366, 4229 |
| BmeT110I | CYCGRG | 1 cut(s) | 1041 |
| BmgBI | CACGTC | 2 cut(s) | 585, 3519 |
| BmtI | GCTAGC | 1 cut(s) | 1809 |
| BpiI | GAAGAC | 1 cut(s) | 1179 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 2662, 2694 |
| BpmI | CTGGAG | 6 cut(s) | 726, 2223, 2397, 2651, 3590, 4557 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1264, 2716 |
| Bpu1102I | GCTNAGC | 1 cut(s) | 2062 |
| BpuEI | CTTGAG | 3 cut(s) | 1785, 2763, 3210 |
| BpuMI | CCSGG | 4 cut(s) | 61, 2457, 2906, 3087 |
| BsaBI | GATNNNNATC | 3 cut(s) | 174, 926, 1414 |
| BsaHI | GRCGYC | 5 cut(s) | 560, 671, 1481, 4061, 4202 |
| BsaI | GGTCTC | 2 cut(s) | 646, 1636 |
| BsaWI | WCCGGW | 4 cut(s) | 112, 124, 683, 704 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 678, 708, 4372, 4402 |
| Bse118I | RCCGGY | 3 cut(s) | 562, 992, 1489 |
| Bse1I | ACTGG | 8 cut(s) | 902, 1905, 2510, 2659, 2713, 3079, 3772, 4451 |
| Bse21I | CCTNAGG | 1 cut(s) | 3318 |
| Bse3DI | GCAATG | 2 cut(s) | 1932, 1992 |
| Bse8I | GATNNNNATC | 3 cut(s) | 174, 926, 1414 |
| BseBI | CCWGG | 9 cut(s) | 1836, 1845, 2241, 2477, 2556, 2994, 3823, 4022, 4575 |
| BseGI | GGATG | 4 cut(s) | 969, 3461, 3906, 4407 |
| BseJI | GATNNNNATC | 3 cut(s) | 174, 926, 1414 |
| BseMI | GCAATG | 2 cut(s) | 1932, 1992 |
| BseNI | ACTGG | 8 cut(s) | 902, 1905, 2510, 2659, 2713, 3079, 3772, 4451 |
| BseRI | GAGGAG | 6 cut(s) | 116, 165, 276, 777, 1105, 3354 |
| BseSI | GKGCMC | 3 cut(s) | 2425, 2533, 3666 |
| BseYI | CCCAGC | 1 cut(s) | 3933 |
| Bsh1236I | CGCG | 1 cut(s) | 1191 |
| BshNI | GGYRCC | 4 cut(s) | 559, 1480, 1873, 2420 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1265, 2533, 2554, 4262 |
| BsiHKCI | CYCGRG | 1 cut(s) | 1041 |
| BslFI | GGGAC | 3 cut(s) | 862, 2092, 3915 |
| BsmBI | CGTCTC | 7 cut(s) | 438, 552, 744, 789, 807, 3525, 4035 |
| BsmFI | GGGAC | 3 cut(s) | 862, 2092, 3915 |
| Bso31I | GGTCTC | 2 cut(s) | 646, 1636 |
| BsoBI | CYCGRG | 1 cut(s) | 1041 |
| Bsp120I | GGGCCC | 1 cut(s) | 3662 |
| Bsp1286I | GDGCHC | 6 cut(s) | 1265, 2425, 2533, 2554, 3666, 4262 |
| Bsp1407I | TGTACA | 1 cut(s) | 910 |
| Bsp1720I | GCTNAGC | 1 cut(s) | 2062 |
| BspFNI | CGCG | 1 cut(s) | 1191 |
| BspHI | TCATGA | 2 cut(s) | 658, 1621 |
| BspMAI | CTGCAG | 5 cut(s) | 1924, 2053, 2739, 4311, 4513 |
| BspMI | ACCTGC | 5 cut(s) | 2545, 3040, 3724, 3988, 4450 |
| BspOI | GCTAGC | 1 cut(s) | 1809 |
| BspT107I | GGYRCC | 4 cut(s) | 559, 1480, 1873, 2420 |
| BspTI | CTTAAG | 1 cut(s) | 1592 |
| BspTNI | GGTCTC | 2 cut(s) | 646, 1636 |
| BsrDI | GCAATG | 2 cut(s) | 1932, 1992 |
| BsrFI | RCCGGY | 3 cut(s) | 562, 992, 1489 |
| BsrGI | TGTACA | 1 cut(s) | 910 |
| BsrI | ACTGG | 8 cut(s) | 902, 1905, 2510, 2659, 2713, 3079, 3772, 4451 |
| BssAI | RCCGGY | 3 cut(s) | 562, 992, 1489 |
| BssNI | GRCGYC | 5 cut(s) | 560, 671, 1481, 4061, 4202 |
| BssSI | CACGAG | 2 cut(s) | 3436, 4255 |
| BssT1I | CCWWGG | 4 cut(s) | 1961, 2082, 2286, 3478 |
| Bst2BI | CACGAG | 2 cut(s) | 3436, 4255 |
| Bst2UI | CCWGG | 9 cut(s) | 1836, 1845, 2241, 2477, 2556, 2994, 3823, 4022, 4575 |
| Bst4CI | ACNGT | 9 cut(s) | 287, 302, 1027, 1184, 2748, 2872, 3254, 3621, 4428 |
| Bst6I | CTCTTC | 6 cut(s) | 19, 315, 644, 1054, 1080, 1634 |
| BstACI | GRCGYC | 5 cut(s) | 560, 671, 1481, 4061, 4202 |
| BstAFI | CTTAAG | 1 cut(s) | 1592 |
| BstAPI | GCANNNNNTGC | 4 cut(s) | 2537, 2566, 4291, 4306 |
| BstAUI | TGTACA | 1 cut(s) | 910 |
| BstDSI | CCRYGG | 2 cut(s) | 3666, 4623 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1881 |
| BstF5I | GGATG | 4 cut(s) | 969, 3461, 3906, 4407 |
| BstFNI | CGCG | 1 cut(s) | 1191 |
| BstH2I | RGCGCY | 2 cut(s) | 563, 1484 |
| BstHHI | GCGC | 2 cut(s) | 562, 1483 |
| BstNI | CCWGG | 9 cut(s) | 1836, 1845, 2241, 2477, 2556, 2994, 3823, 4022, 4575 |
| BstNSI | RCATGY | 4 cut(s) | 1163, 2525, 3148, 3187 |
| BstSFI | CTRYAG | 7 cut(s) | 1026, 1920, 2049, 2735, 2871, 4307, 4509 |
| BstSLI | GKGCMC | 3 cut(s) | 2425, 2533, 3666 |
| BstUI | CGCG | 1 cut(s) | 1191 |
| BstV2I | GAAGAC | 1 cut(s) | 1179 |
| BstX2I | RGATCY | 6 cut(s) | 1268, 1415, 1471, 3011, 4265, 4480 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2942 |
| BstYI | RGATCY | 6 cut(s) | 1268, 1415, 1471, 3011, 4265, 4480 |
| Bsu36I | CCTNAGG | 1 cut(s) | 3318 |
| BsuI | GTATCC | 2 cut(s) | 1859, 1894 |
| BtgI | CCRYGG | 2 cut(s) | 3666, 4623 |
| BtgZI | GCGATG | 3 cut(s) | 882, 1117, 1987 |
| BtrI | CACGTC | 2 cut(s) | 585, 3519 |
| BtsCI | GGATG | 4 cut(s) | 969, 3461, 3906, 4407 |
| BtsI | GCAGTG | 3 cut(s) | 1984, 3126, 3809 |
| BtsIMutI | CAGTG | 7 cut(s) | 909, 1310, 1984, 2706, 3126, 3639, 3809 |
| BveI | ACCTGC | 5 cut(s) | 2545, 3040, 3724, 3988, 4450 |
| CaiI | CAGNNNCTG | 5 cut(s) | 908, 2476, 3638, 3884, 4442 |
| CciI | TCATGA | 2 cut(s) | 658, 1621 |
| CfoI | GCGC | 2 cut(s) | 562, 1483 |
| Cfr10I | RCCGGY | 3 cut(s) | 562, 992, 1489 |
| CseI | GACGC | 3 cut(s) | 660, 1180, 4191 |
| Csp6I | GTAC | 8 cut(s) | 29, 645, 678, 911, 1168, 2473, 3601, 4001 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 3615, 3650, 3715, 3750 |
| CviQI | GTAC | 8 cut(s) | 29, 645, 678, 911, 1168, 2473, 3601, 4001 |
| DinI | GGCGCC | 2 cut(s) | 561, 1482 |
| EaeI | YGGCCR | 2 cut(s) | 2478, 2932 |
| Eam1104I | CTCTTC | 6 cut(s) | 19, 315, 644, 1054, 1080, 1634 |
| EarI | CTCTTC | 6 cut(s) | 19, 315, 644, 1054, 1080, 1634 |
| EciI | GGCGGA | 4 cut(s) | 79, 271, 513, 1530 |
| Ecl136II | GAGCTC | 2 cut(s) | 1263, 4260 |
| Eco130I | CCWWGG | 4 cut(s) | 1961, 2082, 2286, 3478 |
| Eco147I | AGGCCT | 1 cut(s) | 2087 |
| Eco24I | GRGCYC | 3 cut(s) | 1265, 3666, 4262 |
| Eco31I | GGTCTC | 2 cut(s) | 646, 1636 |
| Eco32I | GATATC | 1 cut(s) | 3948 |
| Eco47I | GGWCC | 6 cut(s) | 110, 365, 2079, 2267, 2366, 4229 |
| Eco53kI | GAGCTC | 2 cut(s) | 1263, 4260 |
| Eco57I | CTGAAG | 6 cut(s) | 1389, 1680, 2105, 2422, 3615, 4461 |
| Eco81I | CCTNAGG | 1 cut(s) | 3318 |
| Eco88I | CYCGRG | 1 cut(s) | 1041 |
| EcoICRI | GAGCTC | 2 cut(s) | 1263, 4260 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1881 |
| EcoO109I | RGGNCCY | 2 cut(s) | 1849, 3662 |
| EcoRI | GAATTC | 1 cut(s) | 2167 |
| EcoRII | CCWGG | 9 cut(s) | 1834, 1843, 2239, 2475, 2554, 2992, 3821, 4020, 4573 |
| EcoRV | GATATC | 1 cut(s) | 3948 |
| EcoT14I | CCWWGG | 4 cut(s) | 1961, 2082, 2286, 3478 |
| EcoT22I | ATGCAT | 1 cut(s) | 3421 |
| EcoT38I | GRGCYC | 3 cut(s) | 1265, 3666, 4262 |
| EgeI | GGCGCC | 2 cut(s) | 561, 1482 |
| EheI | GGCGCC | 2 cut(s) | 561, 1482 |
| ErhI | CCWWGG | 4 cut(s) | 1961, 2082, 2286, 3478 |
| Esp3I | CGTCTC | 7 cut(s) | 438, 552, 744, 789, 807, 3525, 4035 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 1315, 1347 |
| FaqI | GGGAC | 3 cut(s) | 862, 2092, 3915 |
| FauI | CCCGC | 3 cut(s) | 3712, 3918, 4636 |
| FauNDI | CATATG | 2 cut(s) | 1824, 3561 |
| FbaI | TGATCA | 2 cut(s) | 1720, 3694 |
| FokI | GGATG | 4 cut(s) | 976, 3448, 3893, 4394 |
| FriOI | GRGCYC | 3 cut(s) | 1265, 3666, 4262 |
| FspBI | CTAG | 8 cut(s) | 21, 293, 624, 1097, 1110, 1647, 1806, 3263 |
| GlaI | GCGC | 2 cut(s) | 561, 1482 |
| GsaI | CCCAGC | 1 cut(s) | 3937 |
| GsuI | CTGGAG | 6 cut(s) | 726, 2223, 2397, 2651, 3590, 4557 |
| HaeII | RGCGCY | 2 cut(s) | 563, 1484 |
| HgaI | GACGC | 3 cut(s) | 660, 1180, 4191 |
| HhaI | GCGC | 2 cut(s) | 562, 1483 |
| Hin1I | GRCGYC | 5 cut(s) | 560, 671, 1481, 4061, 4202 |
| Hin6I | GCGC | 2 cut(s) | 560, 1481 |
| HinP1I | GCGC | 2 cut(s) | 560, 1481 |
| HincII | GTYRAC | 1 cut(s) | 331 |
| HindII | GTYRAC | 1 cut(s) | 331 |
| HindIII | AAGCTT | 2 cut(s) | 2229, 4140 |
| HpyCH4III | ACNGT | 9 cut(s) | 287, 302, 1027, 1184, 2748, 2872, 3254, 3621, 4428 |
| HpyCH4IV | ACGT | 8 cut(s) | 184, 584, 737, 800, 2180, 3110, 3518, 4061 |
| HpySE526I | ACGT | 8 cut(s) | 184, 584, 737, 800, 2180, 3110, 3518, 4061 |
| Hsp92I | GRCGYC | 5 cut(s) | 560, 671, 1481, 4061, 4202 |
| HspAI | GCGC | 2 cut(s) | 560, 1481 |
| KasI | GGCGCC | 2 cut(s) | 559, 1480 |
| Ksp22I | TGATCA | 2 cut(s) | 1720, 3694 |
| MaeI | CTAG | 8 cut(s) | 21, 293, 624, 1097, 1110, 1647, 1806, 3263 |
| MaeII | ACGT | 8 cut(s) | 184, 584, 737, 800, 2180, 3110, 3518, 4061 |
| MfeI | CAATTG | 1 cut(s) | 3153 |
| MflI | RGATCY | 6 cut(s) | 1268, 1415, 1471, 3011, 4265, 4480 |
| MhlI | GDGCHC | 6 cut(s) | 1265, 2425, 2533, 2554, 3666, 4262 |
| MlsI | TGGCCA | 2 cut(s) | 2480, 2934 |
| MluI | ACGCGT | 1 cut(s) | 1189 |
| MluNI | TGGCCA | 2 cut(s) | 2480, 2934 |
| Mly113I | GGCGCC | 2 cut(s) | 560, 1481 |
| MlyI | GAGTC | 3 cut(s) | 1053, 1066, 3580 |
| MmeI | TCCRAC | 6 cut(s) | 419, 1485, 2172, 2294, 2813, 2989 |
| Mox20I | TGGCCA | 2 cut(s) | 2480, 2934 |
| Mph1103I | ATGCAT | 1 cut(s) | 3421 |
| MroXI | GAANNNNTTC | 3 cut(s) | 536, 2039, 2143 |
| MscI | TGGCCA | 2 cut(s) | 2480, 2934 |
| MseI | TTAA | 7 cut(s) | 236, 272, 1593, 1953, 2216, 2577, 2763 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1565, 2030, 2526 |
| Msp20I | TGGCCA | 2 cut(s) | 2480, 2934 |
| MspA1I | CMGCKG | 4 cut(s) | 416, 1919, 2417, 4086 |
| MspCI | CTTAAG | 1 cut(s) | 1592 |
| MunI | CAATTG | 1 cut(s) | 3153 |
| MvaI | CCWGG | 9 cut(s) | 1836, 1845, 2241, 2477, 2556, 2994, 3823, 4022, 4575 |
| MvnI | CGCG | 1 cut(s) | 1191 |
| NarI | GGCGCC | 2 cut(s) | 560, 1481 |
| NciI | CCSGG | 4 cut(s) | 61, 2457, 2906, 3087 |
| NdeI | CATATG | 2 cut(s) | 1824, 3561 |
| NheI | GCTAGC | 1 cut(s) | 1805 |
| NmeAIII | GCCGAG | 2 cut(s) | 1179, 4097 |
| NmuCI | GTSAC | 6 cut(s) | 1192, 1558, 3081, 3433, 4453, 4465 |
| NsiI | ATGCAT | 1 cut(s) | 3421 |
| NspI | RCATGY | 4 cut(s) | 1163, 2525, 3148, 3187 |
| OliI | CACNNNNGTG | 1 cut(s) | 1565 |
| PaeI | GCATGC | 1 cut(s) | 3187 |
| PaeR7I | CTCGAG | 1 cut(s) | 1041 |
| PagI | TCATGA | 2 cut(s) | 658, 1621 |
| PaqCI | CACCTGC | 2 cut(s) | 3724, 4450 |
| PceI | AGGCCT | 1 cut(s) | 2087 |
| PciI | ACATGT | 3 cut(s) | 1159, 2521, 3144 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 303, 306, 428, 1013, 4058 |
| PdmI | GAANNNNTTC | 3 cut(s) | 536, 2039, 2143 |
| PflFI | GACNNNGTC | 1 cut(s) | 4063 |
| PflMI | CCANNNNNTGG | 2 cut(s) | 2075, 4301 |
| PfoI | TCCNGGA | 1 cut(s) | 2239 |
| PleI | GAGTC | 3 cut(s) | 1052, 1066, 3579 |
| PluTI | GGCGCC | 2 cut(s) | 563, 1484 |
| PpsI | GAGTC | 3 cut(s) | 1052, 1066, 3579 |
| PscI | ACATGT | 3 cut(s) | 1159, 2521, 3144 |
| PshBI | ATTAAT | 2 cut(s) | 2216, 2763 |
| Psp124BI | GAGCTC | 2 cut(s) | 1265, 4262 |
| Psp6I | CCWGG | 9 cut(s) | 1834, 1843, 2239, 2475, 2554, 2992, 3821, 4020, 4573 |
| PspFI | CCCAGC | 1 cut(s) | 3933 |
| PspGI | CCWGG | 9 cut(s) | 1834, 1843, 2239, 2475, 2554, 2992, 3821, 4020, 4573 |
| PspOMI | GGGCCC | 1 cut(s) | 3662 |
| PstI | CTGCAG | 5 cut(s) | 1924, 2053, 2739, 4311, 4513 |
| PstNI | CAGNNNCTG | 5 cut(s) | 908, 2476, 3638, 3884, 4442 |
| PsuI | RGATCY | 6 cut(s) | 1268, 1415, 1471, 3011, 4265, 4480 |
| PsyI | GACNNNGTC | 1 cut(s) | 4063 |
| PvuII | CAGCTG | 3 cut(s) | 416, 1919, 2417 |
| RsaI | GTAC | 8 cut(s) | 30, 646, 679, 912, 1169, 2474, 3602, 4002 |
| RsaNI | GTAC | 8 cut(s) | 29, 645, 678, 911, 1168, 2473, 3601, 4001 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1565, 2030, 2526 |
| SacI | GAGCTC | 2 cut(s) | 1265, 4262 |
| SaqAI | TTAA | 7 cut(s) | 236, 272, 1593, 1953, 2216, 2577, 2763 |
| ScaI | AGTACT | 1 cut(s) | 679 |
| SchI | GAGTC | 3 cut(s) | 1053, 1066, 3580 |
| SduI | GDGCHC | 6 cut(s) | 1265, 2425, 2533, 2554, 3666, 4262 |
| SfcI | CTRYAG | 7 cut(s) | 1026, 1920, 2049, 2735, 2871, 4307, 4509 |
| SfoI | GGCGCC | 2 cut(s) | 561, 1482 |
| Sfr274I | CTCGAG | 1 cut(s) | 1041 |
| SgrAI | CRCCGGYG | 1 cut(s) | 1489 |
| SinI | GGWCC | 6 cut(s) | 110, 365, 2079, 2267, 2366, 4229 |
| SlaI | CTCGAG | 1 cut(s) | 1041 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1565, 2030, 2526 |
| SmlI | CTYRAG | 5 cut(s) | 1041, 1592, 1800, 2778, 3225 |
| SmoI | CTYRAG | 5 cut(s) | 1041, 1592, 1800, 2778, 3225 |
| SphI | GCATGC | 1 cut(s) | 3187 |
| SseBI | AGGCCT | 1 cut(s) | 2087 |
| SspDI | GGCGCC | 2 cut(s) | 559, 1480 |
| SspI | AATATT | 2 cut(s) | 1383, 2005 |
| SspMI | CTAG | 8 cut(s) | 21, 293, 624, 1097, 1110, 1647, 1806, 3263 |
| SstI | GAGCTC | 2 cut(s) | 1265, 4262 |
| StuI | AGGCCT | 1 cut(s) | 2087 |
| StyI | CCWWGG | 4 cut(s) | 1961, 2082, 2286, 3478 |
| TaaI | ACNGT | 9 cut(s) | 287, 302, 1027, 1184, 2748, 2872, 3254, 3621, 4428 |
| TaiI | ACGT | 8 cut(s) | 187, 587, 740, 803, 2183, 3113, 3521, 4064 |
| TaqII | GACCGA | 1 cut(s) | 624 |
| TatI | WGTACW | 2 cut(s) | 677, 910 |
| Tru1I | TTAA | 7 cut(s) | 236, 272, 1593, 1953, 2216, 2577, 2763 |
| Tru9I | TTAA | 7 cut(s) | 236, 272, 1593, 1953, 2216, 2577, 2763 |
| TscAI | CASTG | 7 cut(s) | 909, 1317, 1991, 2713, 3133, 3639, 3809 |
| TseFI | GTSAC | 6 cut(s) | 1192, 1558, 3081, 3433, 4453, 4465 |
| Tsp45I | GTSAC | 6 cut(s) | 1192, 1558, 3081, 3433, 4453, 4465 |
| TspRI | CASTG | 7 cut(s) | 909, 1317, 1991, 2713, 3133, 3639, 3809 |
| Tth111I | GACNNNGTC | 1 cut(s) | 4063 |
| Van91I | CCANNNNNTGG | 2 cut(s) | 2075, 4301 |
| Vha464I | CTTAAG | 1 cut(s) | 1592 |
| VneI | GTGCAC | 1 cut(s) | 2529 |
| VpaK11BI | GGWCC | 6 cut(s) | 110, 365, 2079, 2267, 2366, 4229 |
| VspI | ATTAAT | 2 cut(s) | 2216, 2763 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1881 |
| XapI | RAATTY | 3 cut(s) | 1105, 2167, 2818 |
| XbaI | TCTAGA | 1 cut(s) | 292 |
| XceI | RCATGY | 4 cut(s) | 1163, 2525, 3148, 3187 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 3664 |
| XhoI | CTCGAG | 1 cut(s) | 1041 |
| XmnI | GAANNNNTTC | 3 cut(s) | 536, 2039, 2143 |
| XspI | CTAG | 8 cut(s) | 21, 293, 624, 1097, 1110, 1647, 1806, 3263 |
| ZraI | GACGTC | 1 cut(s) | 4062 |
| ZrmI | AGTACT | 1 cut(s) | 679 |
| Zsp2I | ATGCAT | 1 cut(s) | 3421 |