pycom07g23630

Protein TIME FOR

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0007100
Physical Location & Seq
Reverse (-)
24501871 .. 24502704
834 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g23630.4

Sequence Viewer

Length: 447 bp
ATGACTAAAATTCGTTCCACGGGACGACGCGTCGCAGTCAATTTAGGGCACCAAACGTGGGACAGAACGCCTCGTCCCACTGCGTTCCGTCCCGTCCCACTCTCTCCTCACTTTTTCCTTTTGTTTTTCCGCTTCTCTCTTTCGCGCTTTTCTCTTTCGTTTTCAGTTTGCTGTGTTCGTCTTCTCACCTTTGCTCCTACGCTTCGCACGCCGATTTCTTCACGTTTGAAGTCTTGCCGTTTTGTGGGGATGAAAACACAATCTCCCAAGAAGGAACCTCCTAGGCTCAGATTGGATGATAAACGTGAAGGAATCATGCCGACCAAACCGAACTCAACAATCCTAGAGGTTGAAAACCACCAAGAAGAAAAGTTCCAGATAGATCTGATGGTGAGCTTCATCAAATTCATTTTTTTTCCGCCATATTTTTCCCTTTTTAAAGGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

149

Amino Acids

17.3

Weight (kDa)

10.93

Isoelectric Point (pI)

46.34

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 48
AccII CGCG 2 cut(s) 30, 145
AciI CCGC 2 cut(s) 130, 419
AcsI RAATTY 2 cut(s) 9, 404
AfiI CCNNNNNNNGG 2 cut(s) 58, 244
AflIII ACRYGT 1 cut(s) 28
AgsI TTSAA 2 cut(s) 229, 353
AhdI GACNNNNNGTC 1 cut(s) 29
AloI GAACNNNNNNTCC 2 cut(s) 58, 90
AluBI AGCT 1 cut(s) 396
AluI AGCT 1 cut(s) 396
ApoI RAATTY 2 cut(s) 9, 404
AspA2I CCTAGG 1 cut(s) 281
AspLEI GCGC 1 cut(s) 147
AsuHPI GGTGA 2 cut(s) 178, 403
AvrII CCTAGG 1 cut(s) 281
BaeGI GKGCMC 1 cut(s) 51
BanI GGYRCC 1 cut(s) 48
BbsI GAAGAC 1 cut(s) 173
BccI CCATC 1 cut(s) 382
BceAI ACGGC 1 cut(s) 222
BfaI CTAG 2 cut(s) 282, 344
BglII AGATCT 1 cut(s) 382
BlnI CCTAGG 1 cut(s) 281
BmeRI GACNNNNNGTC 1 cut(s) 29
BmiI GGNNCC 2 cut(s) 50, 276
BpiI GAAGAC 1 cut(s) 173
BsaJI CCNNGG 2 cut(s) 18, 281
BsaXI ACNNNNNCTCC 4 cut(s) 178, 208, 247, 277
Bsc4I CCNNNNNNNGG 2 cut(s) 58, 244
BseDI CCNNGG 2 cut(s) 18, 281
BseGI GGATG 2 cut(s) 255, 301
BseLI CCNNNNNNNGG 2 cut(s) 58, 244
BseMII CTCAG 1 cut(s) 301
BseRI GAGGAG 1 cut(s) 96
BseSI GKGCMC 1 cut(s) 51
Bsh1236I CGCG 2 cut(s) 30, 145
BshNI GGYRCC 1 cut(s) 48
BslFI GGGAC 5 cut(s) 36, 60, 74, 75, 80
BslI CCNNNNNNNGG 2 cut(s) 58, 244
BsmFI GGGAC 5 cut(s) 36, 60, 74, 75, 80
Bsp1286I GDGCHC 1 cut(s) 51
Bsp143I GATC 1 cut(s) 382
BspACI CCGC 2 cut(s) 130, 419
BspCNI CTCAG 1 cut(s) 300
BspFNI CGCG 2 cut(s) 30, 145
BspLI GGNNCC 2 cut(s) 50, 276
BspT107I GGYRCC 1 cut(s) 48
BssECI CCNNGG 2 cut(s) 18, 281
BssMI GATC 1 cut(s) 382
BssT1I CCWWGG 1 cut(s) 281
BstC8I GCNNGC 1 cut(s) 209
BstDEI CTNAG 1 cut(s) 287
BstDSI CCRYGG 1 cut(s) 18
BstF5I GGATG 2 cut(s) 255, 301
BstFNI CGCG 2 cut(s) 30, 145
BstHHI GCGC 1 cut(s) 147
BstKTI GATC 1 cut(s) 385
BstMBI GATC 1 cut(s) 382
BstMWI GCNNNNNNNGC 1 cut(s) 208
BstSLI GKGCMC 1 cut(s) 51
BstUI CGCG 2 cut(s) 30, 145
BstV2I GAAGAC 1 cut(s) 173
BstX2I RGATCY 1 cut(s) 382
BstYI RGATCY 1 cut(s) 382
BtgI CCRYGG 1 cut(s) 18
BtsCI GGATG 2 cut(s) 255, 301
BtsI GCAGTG 1 cut(s) 78
BtsIMutI CAGTG 1 cut(s) 78
Cac8I GCNNGC 1 cut(s) 209
CfoI GCGC 1 cut(s) 147
CseI GACGC 2 cut(s) 19, 36
CviAII CATG 1 cut(s) 316
CviJI RGCY 2 cut(s) 286, 396
CviKI_1 RGCY 2 cut(s) 286, 396
DdeI CTNAG 1 cut(s) 287
DpnI GATC 1 cut(s) 384
DpnII GATC 1 cut(s) 382
DraI TTTAAA 1 cut(s) 439
DriI GACNNNNNGTC 1 cut(s) 29
Eam1105I GACNNNNNGTC 1 cut(s) 29
EciI GGCGGA 1 cut(s) 408
Eco130I CCWWGG 1 cut(s) 281
EcoT14I CCWWGG 1 cut(s) 281
ErhI CCWWGG 1 cut(s) 281
FaeI CATG 1 cut(s) 319
FaiI YATR 2 cut(s) 317, 424
FaqI GGGAC 5 cut(s) 36, 60, 74, 75, 80
FatI CATG 1 cut(s) 315
FokI GGATG 2 cut(s) 262, 308
FspBI CTAG 2 cut(s) 282, 344
GlaI GCGC 1 cut(s) 146
HgaI GACGC 2 cut(s) 19, 36
HhaI GCGC 1 cut(s) 147
Hin1II CATG 1 cut(s) 319
Hin6I GCGC 1 cut(s) 145
HinP1I GCGC 1 cut(s) 145
HinfI GANTC 1 cut(s) 312
HphI GGTGA 2 cut(s) 178, 403
Hpy188I TCNGA 2 cut(s) 290, 387
Hpy188III TCNNGA 1 cut(s) 376
Hpy99I CGWCG 2 cut(s) 30, 35
HpyAV CCTTC 2 cut(s) 265, 302
HpyCH4IV ACGT 3 cut(s) 56, 223, 304
HpyF10VI GCNNNNNNNGC 1 cut(s) 208
HpyF3I CTNAG 1 cut(s) 287
HpySE526I ACGT 3 cut(s) 56, 223, 304
Hsp92II CATG 1 cut(s) 319
HspAI GCGC 1 cut(s) 145
Kzo9I GATC 1 cut(s) 382
LmnI GCTCC 1 cut(s) 199
LpnPI CCDG 1 cut(s) 389
MaeI CTAG 2 cut(s) 282, 344
MaeII ACGT 3 cut(s) 56, 223, 304
MalI GATC 1 cut(s) 384
MboI GATC 1 cut(s) 382
MboII GAAGA 3 cut(s) 173, 210, 377
MflI RGATCY 1 cut(s) 382
MhlI GDGCHC 1 cut(s) 51
MluCI AATT 3 cut(s) 9, 40, 404
MluI ACGCGT 1 cut(s) 28
MnlI CCTC 4 cut(s) 81, 117, 288, 340
MseI TTAA 1 cut(s) 438
MvnI CGCG 2 cut(s) 30, 145
MwoI GCNNNNNNNGC 1 cut(s) 208
NdeII GATC 1 cut(s) 382
NlaIII CATG 1 cut(s) 319
NlaIV GGNNCC 2 cut(s) 50, 276
PfeI GAWTC 1 cut(s) 312
PspN4I GGNNCC 2 cut(s) 50, 276
PsuI RGATCY 1 cut(s) 382
SaqAI TTAA 1 cut(s) 438
Sau3AI GATC 1 cut(s) 382
SduI GDGCHC 1 cut(s) 51
SetI ASST 7 cut(s) 59, 191, 226, 280, 307, 351, 398
Sse9I AATT 3 cut(s) 9, 40, 404
SsiI CCGC 2 cut(s) 130, 419
SspMI CTAG 2 cut(s) 282, 344
StyI CCWWGG 1 cut(s) 281
TaiI ACGT 3 cut(s) 59, 226, 307
TasI AATT 3 cut(s) 9, 40, 404
TfiI GAWTC 1 cut(s) 312
Tru1I TTAA 1 cut(s) 438
Tru9I TTAA 1 cut(s) 438
TscAI CASTG 1 cut(s) 85
TspDTI ATGAA 3 cut(s) 266, 388, 397
TspGWI ACGGA 1 cut(s) 77
TspRI CASTG 1 cut(s) 85
XapI RAATTY 2 cut(s) 9, 404
XmaJI CCTAGG 1 cut(s) 281
XspI CTAG 2 cut(s) 282, 344
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.