Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0007100

Physical Location & Seq

Genomic Coordinates Forward (+)

9301796 .. 9306119

Gene Structure 4324 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1127600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 729 bp

ATGGAAATTTGGTGTCTTTGGTTCGAATCTGCGGCACCCAAGAGGAAAAGACCGCGACCCGTGAAGTATGACGACGAGAACCCAGCGGTTCAAAACAGTCCCATTTCTTCTACGGCCAAAGTGGTGGCTGATCAGCCTGCTAAGGTTGAGACTGCCTGTCCGAATTTGGAAAAAAAAAACCCAGGATCTCCAGCTGAAAATGGCGGGTCTTCGTATGATTTGCCCCACTCTCAAGCTGTTCCGGCATCGCTGGAGGCTCAGCGGGAGTCAATTAGGCCGGAGAGCAACGCGGTGTTGAAGTCAAGGCCAGTGAACGATGAATTGGAGAGTCGAAATGTTAAAACAAGCAAGGAGGAGCCTCAATCTTCCAAGAAGGAACCTACTGGCATCAGATTGGATGATAAACGTGAAGAAATCACACTGACCAAACCAGATGTGAAGTTAAAGAGAGGAGGACTAAATCAATCTTCGATTTACCTGACCAATAATTCAACATTCAAGGAAGATGGTGAAAATCAGAACCCCAATCTATCAACCCTTCCAATGAACCAAGCTAAGGCCATGAAGGCAACAATCAAATCAAGCACAGAGAAGAAGCAACCAATTGAGAGCACAACGCCGAACAATGAGGTTCTTCCAAAGCTGAGAAGCACGCTGTCTGCAAGGAATATTATGCTTGGTCCCAATTACGATGAGGAAATTAACAAGACTCTGGTTTGCCTTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

243

Amino Acids

26.87

Weight (kDa)

8.61

Isoelectric Point (pI)

67.2

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0007100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22380 AT3G22380 AT3G22380
fragaria_vesca	FvH4_4g15230 FvH4_4g15230
malus_domestica	MD13G1190800.v1.1 MD16G1127600.v1.1 MD16G1191200.v1.1
prunus_persica	Prupe.1G011200_v2.0.a1 Prupe.1G011200_v2.0.a1
pyrus_communis	pycom07g23630 pycom13g16390 pycom16g16090
rosa_chinensis	RchiOBHm_Chr4g0416621
rosa_laevigata	RLG00000007965
rosa_multiflora	Rmu_co8150674.1_g000001 Rmu_sc0003722.1_g000056
rosa_roxburghii	Rroxscaffold_5G00360500
rosa_rugosa	Rorug04G0143400 Rorug04G0143500
rosa_samantha	Rh4AG205900 Rh4BG203300 Rh4CG216700 Rh4DG202800
rosa_wichuraiana	Rw4G017420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB1I	GGYRCC	1 cut(s)	34
AccII	CGCG	2 cut(s)	55, 290
AciI	CCGC	6 cut(s)	32, 53, 86, 204, 262, 290
AclWI	GGATC	1 cut(s)	193
AcoI	YGGCCR	1 cut(s)	114
AcsI	RAATTY	2 cut(s)	6, 163
AfiI	CCNNNNNNNGG	1 cut(s)	556
AgsI	TTSAA	4 cut(s)	92, 298, 492, 499
AhdI	GACNNNNNGTC	1 cut(s)	156
AjnI	CCWGG	1 cut(s)	181
AjuI	GAANNNNNNNTTGG	2 cut(s)	305, 337
AluBI	AGCT	4 cut(s)	194, 236, 554, 643
AluI	AGCT	4 cut(s)	194, 236, 554, 643
Alw21I	GWGCWC	1 cut(s)	614
Alw26I	GTCTC	1 cut(s)	143
AlwI	GGATC	1 cut(s)	193
AoxI	GGCC	4 cut(s)	114, 275, 305, 558
ApoI	RAATTY	2 cut(s)	6, 163
AspS9I	GGNCC	1 cut(s)	680
AsuHPI	GGTGA	1 cut(s)	521
AsuII	TTCGAA	1 cut(s)	24
AvaII	GGWCC	1 cut(s)	680
BanI	GGYRCC	1 cut(s)	34
BbsI	GAAGAC	1 cut(s)	201
Bbv12I	GWGCWC	1 cut(s)	614
BccI	CCATC	1 cut(s)	500
BceAI	ACGGC	1 cut(s)	129
BciT130I	CCWGG	1 cut(s)	183
BclI	TGATCA	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	143
BglI	GCCNNNNNGGC	1 cut(s)	566
BisI	GCNGC	1 cut(s)	33
BlpI	GCTNAGC	1 cut(s)	258
BlsI	GCNGC	1 cut(s)	34
Bme1390I	CCNGG	1 cut(s)	183
Bme18I	GGWCC	1 cut(s)	680
BmeRI	GACNNNNNGTC	1 cut(s)	156
BmgT120I	GGNCC	1 cut(s)	680
BmiI	GGNNCC	4 cut(s)	36, 357, 378, 682
BmrFI	CCNGG	1 cut(s)	183
BmsI	GCATC	2 cut(s)	254, 396
BpiI	GAAGAC	1 cut(s)	201
BpmI	CTGGAG	2 cut(s)	174, 272
Bpu10I	CCTNAGC	2 cut(s)	141, 555
Bpu1102I	GCTNAGC	1 cut(s)	258
Bpu14I	TTCGAA	1 cut(s)	24
BpuEI	CTTGAG	1 cut(s)	216
BsaJI	CCNNGG	1 cut(s)	181
Bsc4I	CCNNNNNNNGG	1 cut(s)	556
Bse1I	ACTGG	2 cut(s)	308, 388
BseBI	CCWGG	1 cut(s)	183
BseDI	CCNNGG	1 cut(s)	181
BseGI	GGATG	1 cut(s)	403
BseLI	CCNNNNNNNGG	1 cut(s)	556
BseMII	CTCAG	2 cut(s)	272, 635
BseNI	ACTGG	2 cut(s)	308, 388
BseRI	GAGGAG	2 cut(s)	368, 465
BseYI	CCCAGC	1 cut(s)	82
Bsh1236I	CGCG	2 cut(s)	55, 290
BshFI	GGCC	4 cut(s)	116, 277, 307, 560
BshNI	GGYRCC	1 cut(s)	34
BsiHKAI	GWGCWC	1 cut(s)	614
BsiSI	CCGG	2 cut(s)	242, 278
BslFI	GGGAC	2 cut(s)	84, 666
BslI	CCNNNNNNNGG	1 cut(s)	556
BsmAI	GTCTC	1 cut(s)	143
BsmFI	GGGAC	2 cut(s)	84, 666
BsnI	GGCC	4 cut(s)	116, 277, 307, 560
Bsp119I	TTCGAA	1 cut(s)	24
Bsp1286I	GDGCHC	1 cut(s)	614
Bsp143I	GATC	2 cut(s)	130, 185
Bsp1720I	GCTNAGC	1 cut(s)	258
BspACI	CCGC	6 cut(s)	32, 53, 86, 204, 262, 290
BspANI	GGCC	4 cut(s)	116, 277, 307, 560
BspCNI	CTCAG	2 cut(s)	271, 636
BspFNI	CGCG	2 cut(s)	55, 290
BspLI	GGNNCC	4 cut(s)	36, 357, 378, 682
BspPI	GGATC	1 cut(s)	193
BspT104I	TTCGAA	1 cut(s)	24
BspT107I	GGYRCC	1 cut(s)	34
BsrI	ACTGG	2 cut(s)	308, 388
BssECI	CCNNGG	1 cut(s)	181
BssMI	GATC	2 cut(s)	130, 185
Bst2UI	CCWGG	1 cut(s)	183
Bst4CI	ACNGT	1 cut(s)	98
BstBI	TTCGAA	1 cut(s)	24
BstC8I	GCNNGC	2 cut(s)	138, 653
BstDEI	CTNAG	4 cut(s)	141, 258, 555, 644
BstF5I	GGATG	1 cut(s)	403
BstFNI	CGCG	2 cut(s)	55, 290
BstKTI	GATC	2 cut(s)	133, 188
BstMAI	GTCTC	1 cut(s)	143
BstMBI	GATC	2 cut(s)	130, 185
BstMWI	GCNNNNNNNGC	2 cut(s)	242, 566
BstNI	CCWGG	1 cut(s)	183
BstSCI	CCNGG	1 cut(s)	181
BstUI	CGCG	2 cut(s)	55, 290
BstV2I	GAAGAC	1 cut(s)	201
BstX2I	RGATCY	1 cut(s)	185
BstXI	CCANNNNNNTGG	1 cut(s)	124
BstYI	RGATCY	1 cut(s)	185
BsuRI	GGCC	4 cut(s)	116, 277, 307, 560
BtgZI	GCGATG	1 cut(s)	231
BtsCI	GGATG	1 cut(s)	403
BtsIMutI	CAGTG	2 cut(s)	315, 419
Cac8I	GCNNGC	2 cut(s)	138, 653
Cfr13I	GGNCC	1 cut(s)	680
CviAII	CATG	1 cut(s)	562
DdeI	CTNAG	4 cut(s)	141, 258, 555, 644
DpnI	GATC	2 cut(s)	132, 187
DpnII	GATC	2 cut(s)	130, 185
DriI	GACNNNNNGTC	1 cut(s)	156
EaeI	YGGCCR	1 cut(s)	114
Eam1105I	GACNNNNNGTC	1 cut(s)	156
Eco47I	GGWCC	1 cut(s)	680
EcoRII	CCWGG	1 cut(s)	181
FaeI	CATG	1 cut(s)	565
FaiI	YATR	4 cut(s)	69, 216, 563, 674
FaqI	GGGAC	2 cut(s)	84, 666
FatI	CATG	1 cut(s)	561
FauI	CCCGC	2 cut(s)	197, 255
FbaI	TGATCA	1 cut(s)	130
Fnu4HI	GCNGC	1 cut(s)	33
FokI	GGATG	1 cut(s)	410
Fsp4HI	GCNGC	1 cut(s)	33
GluI	GCNGC	1 cut(s)	33
GsaI	CCCAGC	1 cut(s)	86
GsuI	CTGGAG	2 cut(s)	174, 272
HaeIII	GGCC	4 cut(s)	116, 277, 307, 560
HapII	CCGG	2 cut(s)	242, 278
Hin1II	CATG	1 cut(s)	565
HinfI	GANTC	4 cut(s)	26, 266, 328, 709
HpaII	CCGG	2 cut(s)	242, 278
HphI	GGTGA	1 cut(s)	521
Hpy166II	GTNNAC	1 cut(s)	313
Hpy188I	TCNGA	3 cut(s)	162, 392, 519
Hpy8I	GTNNAC	1 cut(s)	313
Hpy99I	CGWCG	1 cut(s)	77
HpyAV	CCTTC	3 cut(s)	367, 548, 559
HpyCH4III	ACNGT	1 cut(s)	98
HpyCH4IV	ACGT	1 cut(s)	406
HpyCH4V	TGCA	1 cut(s)	662
HpyF10VI	GCNNNNNNNGC	2 cut(s)	242, 566
HpyF3I	CTNAG	4 cut(s)	141, 258, 555, 644
HpySE526I	ACGT	1 cut(s)	406
Hsp92II	CATG	1 cut(s)	565
Ksp22I	TGATCA	1 cut(s)	130
Kzo9I	GATC	2 cut(s)	130, 185
LmnI	GCTCC	1 cut(s)	355
LweI	GCATC	2 cut(s)	254, 396
MaeII	ACGT	1 cut(s)	406
MalI	GATC	2 cut(s)	132, 187
MboI	GATC	2 cut(s)	130, 185
MboII	GAAGA	8 cut(s)	99, 201, 357, 422, 459, 515, 604, 626
MfeI	CAATTG	1 cut(s)	603
MflI	RGATCY	1 cut(s)	185
MhlI	GDGCHC	1 cut(s)	614
MluCI	AATT	8 cut(s)	6, 163, 270, 320, 487, 603, 685, 699
MlyI	GAGTC	3 cut(s)	275, 337, 703
MnlI	CCTC	8 cut(s)	36, 247, 346, 369, 443, 446, 622, 688
MseI	TTAA	3 cut(s)	339, 443, 702
MspA1I	CMGCKG	3 cut(s)	86, 194, 262
MspI	CCGG	2 cut(s)	242, 278
MspR9I	CCNGG	1 cut(s)	183
MunI	CAATTG	1 cut(s)	603
MvaI	CCWGG	1 cut(s)	183
MvnI	CGCG	2 cut(s)	55, 290
MwoI	GCNNNNNNNGC	2 cut(s)	242, 566
NdeII	GATC	2 cut(s)	130, 185
NlaIII	CATG	1 cut(s)	565
NlaIV	GGNNCC	4 cut(s)	36, 357, 378, 682
NspV	TTCGAA	1 cut(s)	24
PfeI	GAWTC	1 cut(s)	26
PkrI	GCNGC	1 cut(s)	34
PleI	GAGTC	3 cut(s)	274, 336, 703
PpsI	GAGTC	3 cut(s)	274, 336, 703
Psp6I	CCWGG	1 cut(s)	181
PspFI	CCCAGC	1 cut(s)	82
PspGI	CCWGG	1 cut(s)	181
PspN4I	GGNNCC	4 cut(s)	36, 357, 378, 682
PspPI	GGNCC	1 cut(s)	680
PsuI	RGATCY	1 cut(s)	185
PvuII	CAGCTG	1 cut(s)	194
SaqAI	TTAA	3 cut(s)	339, 443, 702
SatI	GCNGC	1 cut(s)	33
Sau3AI	GATC	2 cut(s)	130, 185
Sau96I	GGNCC	1 cut(s)	680
SchI	GAGTC	3 cut(s)	275, 337, 703
ScrFI	CCNGG	1 cut(s)	183
SduI	GDGCHC	1 cut(s)	614
SetI	ASST	9 cut(s)	147, 196, 238, 382, 409, 480, 556, 633, 645
SfaNI	GCATC	2 cut(s)	254, 396
SfuI	TTCGAA	1 cut(s)	24
SinI	GGWCC	1 cut(s)	680
SmlI	CTYRAG	1 cut(s)	231
SmoI	CTYRAG	1 cut(s)	231
Sse9I	AATT	8 cut(s)	6, 163, 270, 320, 487, 603, 685, 699
SsiI	CCGC	6 cut(s)	32, 53, 86, 204, 262, 290
SspI	AATATT	1 cut(s)	670
StyD4I	CCNGG	1 cut(s)	181
TaaI	ACNGT	1 cut(s)	98
TaiI	ACGT	1 cut(s)	409
TaqI	TCGA	3 cut(s)	24, 331, 470
TasI	AATT	8 cut(s)	6, 163, 270, 320, 487, 603, 685, 699
TauI	GCSGC	1 cut(s)	35
TfiI	GAWTC	1 cut(s)	26
Tru1I	TTAA	3 cut(s)	339, 443, 702
Tru9I	TTAA	3 cut(s)	339, 443, 702
TscAI	CASTG	2 cut(s)	315, 426
TspDTI	ATGAA	3 cut(s)	333, 560, 578
TspRI	CASTG	2 cut(s)	315, 426
VpaK11BI	GGWCC	1 cut(s)	680
XapI	RAATTY	2 cut(s)	6, 163

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.