Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8150674.1

Orthogroup ID

OG0007100

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 432

Gene Structure 432 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8150674.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 432 bp

gattctacagcacccaagaggaaaagaccgcgagcccccgccaagtatgatgaagaacacccatcgattttcccagttcaaagcagtgccatttcgtctacaaacaaggtggccacagatcaatccatgaagattgaggcttcctctccaaatatggagaaaaacccaggatctgttactgaaaatggtgggttttcgtacaacttggccaactctcacgccatttcagtaccagaggcccagcctgagtccaagaaggagtctatgaagccggagagcaaggctatctctgattcgaagccgggtaatgatgaatcgcagagtcaaaatctcaaaccgaggaaagaggaagctcaatcccccaagaaggaatcccctgtgttcagattggatgataatcgtgaggatatgaaagcgaccaataaagcgtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

143

Amino Acids

15.67

Weight (kDa)

8.08

Isoelectric Point (pI)

75.74

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0007100)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22380 AT3G22380 AT3G22380
fragaria_vesca	FvH4_4g15230 FvH4_4g15230
malus_domestica	MD13G1190800.v1.1 MD16G1127600.v1.1 MD16G1191200.v1.1
prunus_persica	Prupe.1G011200_v2.0.a1 Prupe.1G011200_v2.0.a1
pyrus_communis	pycom07g23630 pycom13g16390 pycom16g16090
rosa_chinensis	RchiOBHm_Chr4g0416621
rosa_laevigata	RLG00000007965
rosa_multiflora	Rmu_co8150674.1_g000001 Rmu_sc0003722.1_g000056
rosa_roxburghii	Rroxscaffold_5G00360500
rosa_rugosa	Rorug04G0143400 Rorug04G0143500
rosa_samantha	Rh4AG205900 Rh4BG203300 Rh4CG216700 Rh4DG202800
rosa_wichuraiana	Rw4G017420

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	98
AccII	CGCG	1 cut(s)	31
AciI	CCGC	2 cut(s)	29, 39
AclWI	GGATC	1 cut(s)	178
AcoI	YGGCCR	2 cut(s)	111, 207
AfaI	GTAC	2 cut(s)	200, 231
AfiI	CCNNNNNNNGG	1 cut(s)	367
AgsI	TTSAA	1 cut(s)	80
AjnI	CCWGG	1 cut(s)	166
AluBI	AGCT	1 cut(s)	353
AluI	AGCT	1 cut(s)	353
AlwI	GGATC	1 cut(s)	178
AlwNI	CAGNNNCTG	1 cut(s)	173
AoxI	GGCC	3 cut(s)	111, 207, 237
AspS9I	GGNCC	1 cut(s)	238
AsuC2I	CCSGG	1 cut(s)	303
AsuII	TTCGAA	1 cut(s)	296
BalI	TGGCCA	2 cut(s)	113, 209
BanII	GRGCYC	1 cut(s)	37
BccI	CCATC	1 cut(s)	70
BciT130I	CCWGG	1 cut(s)	168
BcnI	CCSGG	1 cut(s)	303
BfmI	CTRYAG	1 cut(s)	6
Bme1390I	CCNGG	2 cut(s)	168, 303
BmgT120I	GGNCC	1 cut(s)	238
BmrFI	CCNGG	2 cut(s)	168, 303
BmrI	ACTGGG	1 cut(s)	68
BmuI	ACTGGG	1 cut(s)	68
BplI	GAGNNNNNCTC	2 cut(s)	128, 160
Bpu14I	TTCGAA	1 cut(s)	296
BpuMI	CCSGG	1 cut(s)	303
Bsa29I	ATCGAT	1 cut(s)	65
BsaBI	GATNNNNATC	1 cut(s)	396
BsaJI	CCNNGG	2 cut(s)	166, 338
Bsc4I	CCNNNNNNNGG	1 cut(s)	367
Bse1I	ACTGG	1 cut(s)	74
Bse8I	GATNNNNATC	1 cut(s)	396
BseBI	CCWGG	1 cut(s)	168
BseCI	ATCGAT	1 cut(s)	65
BseDI	CCNNGG	2 cut(s)	166, 338
BseGI	GGATG	1 cut(s)	397
BseJI	GATNNNNATC	1 cut(s)	396
BseLI	CCNNNNNNNGG	1 cut(s)	367
BseMII	CTCAG	1 cut(s)	237
BseNI	ACTGG	1 cut(s)	74
BseYI	CCCAGC	1 cut(s)	240
Bsh1236I	CGCG	1 cut(s)	31
BshFI	GGCC	3 cut(s)	113, 209, 239
BshVI	ATCGAT	1 cut(s)	65
BsiSI	CCGG	2 cut(s)	272, 302
BslI	CCNNNNNNNGG	1 cut(s)	367
BsnI	GGCC	3 cut(s)	113, 209, 239
Bsp119I	TTCGAA	1 cut(s)	296
Bsp1286I	GDGCHC	1 cut(s)	37
Bsp143I	GATC	2 cut(s)	118, 170
BspACI	CCGC	2 cut(s)	29, 39
BspANI	GGCC	3 cut(s)	113, 209, 239
BspCNI	CTCAG	1 cut(s)	238
BspDI	ATCGAT	1 cut(s)	65
BspFNI	CGCG	1 cut(s)	31
BspPI	GGATC	1 cut(s)	178
BspT104I	TTCGAA	1 cut(s)	296
BsrI	ACTGG	1 cut(s)	74
BssECI	CCNNGG	2 cut(s)	166, 338
BssMI	GATC	2 cut(s)	118, 170
Bst2UI	CCWGG	1 cut(s)	168
BstBI	TTCGAA	1 cut(s)	296
BstC8I	GCNNGC	1 cut(s)	33
BstDEI	CTNAG	1 cut(s)	246
BstF5I	GGATG	1 cut(s)	397
BstFNI	CGCG	1 cut(s)	31
BstKTI	GATC	2 cut(s)	121, 173
BstMBI	GATC	2 cut(s)	118, 170
BstNI	CCWGG	1 cut(s)	168
BstSCI	CCNGG	2 cut(s)	166, 301
BstSFI	CTRYAG	1 cut(s)	6
BstUI	CGCG	1 cut(s)	31
BstX2I	RGATCY	1 cut(s)	170
BstYI	RGATCY	1 cut(s)	170
Bsu15I	ATCGAT	1 cut(s)	65
BsuRI	GGCC	3 cut(s)	113, 209, 239
BsuTUI	ATCGAT	1 cut(s)	65
BtsCI	GGATG	1 cut(s)	397
BtsI	GCAGTG	1 cut(s)	91
BtsIMutI	CAGTG	1 cut(s)	91
Cac8I	GCNNGC	1 cut(s)	33
CaiI	CAGNNNCTG	1 cut(s)	173
Cfr13I	GGNCC	1 cut(s)	238
ClaI	ATCGAT	1 cut(s)	65
Csp6I	GTAC	2 cut(s)	199, 230
CspCI	CAANNNNNGTGG	2 cut(s)	90, 125
CviAII	CATG	1 cut(s)	127
CviQI	GTAC	2 cut(s)	199, 230
DdeI	CTNAG	1 cut(s)	246
DpnI	GATC	2 cut(s)	120, 172
DpnII	GATC	2 cut(s)	118, 170
EaeI	YGGCCR	2 cut(s)	111, 207
Eco24I	GRGCYC	1 cut(s)	37
EcoRII	CCWGG	1 cut(s)	166
EcoT38I	GRGCYC	1 cut(s)	37
FaeI	CATG	1 cut(s)	130
FaiI	YATR	5 cut(s)	48, 128, 155, 266, 410
FatI	CATG	1 cut(s)	126
FauI	CCCGC	1 cut(s)	46
FblI	GTMKAC	1 cut(s)	98
FokI	GGATG	1 cut(s)	404
FriOI	GRGCYC	1 cut(s)	37
GsaI	CCCAGC	1 cut(s)	244
HaeIII	GGCC	3 cut(s)	113, 209, 239
HapII	CCGG	2 cut(s)	272, 302
Hin1II	CATG	1 cut(s)	130
HinfI	GANTC	7 cut(s)	2, 248, 260, 293, 314, 322, 371
HpaII	CCGG	2 cut(s)	272, 302
Hpy166II	GTNNAC	1 cut(s)	99
Hpy188I	TCNGA	2 cut(s)	292, 386
Hpy188III	TCNNGA	1 cut(s)	401
Hpy8I	GTNNAC	1 cut(s)	99
HpyAV	CCTTC	2 cut(s)	250, 361
HpyF3I	CTNAG	1 cut(s)	246
Hsp92II	CATG	1 cut(s)	130
Kzo9I	GATC	2 cut(s)	118, 170
LpnPI	CCDG	9 cut(s)	87, 153, 180, 246, 254, 258, 285, 315, 390
MaeIII	GTNAC	1 cut(s)	175
MalI	GATC	2 cut(s)	120, 172
MboI	GATC	2 cut(s)	118, 170
MboII	GAAGA	2 cut(s)	65, 142
MflI	RGATCY	1 cut(s)	170
MhlI	GDGCHC	1 cut(s)	37
MlsI	TGGCCA	2 cut(s)	113, 209
MluNI	TGGCCA	2 cut(s)	113, 209
MlyI	GAGTC	3 cut(s)	257, 269, 331
MnlI	CCTC	7 cut(s)	12, 130, 154, 229, 333, 340, 397
Mox20I	TGGCCA	2 cut(s)	113, 209
MscI	TGGCCA	2 cut(s)	113, 209
Msp20I	TGGCCA	2 cut(s)	113, 209
MspI	CCGG	2 cut(s)	272, 302
MspR9I	CCNGG	2 cut(s)	168, 303
MvaI	CCWGG	1 cut(s)	168
MvnI	CGCG	1 cut(s)	31
NciI	CCSGG	1 cut(s)	303
NdeII	GATC	2 cut(s)	118, 170
NlaIII	CATG	1 cut(s)	130
NspV	TTCGAA	1 cut(s)	296
PfeI	GAWTC	4 cut(s)	2, 293, 314, 371
PleI	GAGTC	3 cut(s)	256, 268, 330
PpsI	GAGTC	3 cut(s)	256, 268, 330
Psp6I	CCWGG	1 cut(s)	166
PspFI	CCCAGC	1 cut(s)	240
PspGI	CCWGG	1 cut(s)	166
PspPI	GGNCC	1 cut(s)	238
PstNI	CAGNNNCTG	1 cut(s)	173
PsuI	RGATCY	1 cut(s)	170
RsaI	GTAC	2 cut(s)	200, 231
RsaNI	GTAC	2 cut(s)	199, 230
Sau3AI	GATC	2 cut(s)	118, 170
Sau96I	GGNCC	1 cut(s)	238
SchI	GAGTC	3 cut(s)	257, 269, 331
ScrFI	CCNGG	2 cut(s)	168, 303
SduI	GDGCHC	1 cut(s)	37
SetI	ASST	2 cut(s)	111, 355
SfcI	CTRYAG	1 cut(s)	6
SfuI	TTCGAA	1 cut(s)	296
SsiI	CCGC	2 cut(s)	29, 39
StyD4I	CCNGG	2 cut(s)	166, 301
TaqI	TCGA	2 cut(s)	65, 296
TfiI	GAWTC	4 cut(s)	2, 293, 314, 371
TscAI	CASTG	1 cut(s)	91
TspDTI	ATGAA	5 cut(s)	66, 143, 281, 327, 425
TspRI	CASTG	1 cut(s)	91
XmiI	GTMKAC	1 cut(s)	98

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.