Protein TIME FOR
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G22380 AT3G22380 AT3G22380 |
| fragaria_vesca | FvH4_4g15230 FvH4_4g15230 |
| malus_domestica | MD13G1190800.v1.1 MD16G1127600.v1.1 MD16G1191200.v1.1 |
| prunus_persica | Prupe.1G011200_v2.0.a1 Prupe.1G011200_v2.0.a1 |
| pyrus_communis | pycom07g23630 pycom13g16390 pycom16g16090 |
| rosa_chinensis | RchiOBHm_Chr4g0416621 |
| rosa_laevigata | RLG00000007965 |
| rosa_multiflora | Rmu_co8150674.1_g000001 Rmu_sc0003722.1_g000056 |
| rosa_roxburghii | Rroxscaffold_5G00360500 |
| rosa_rugosa | Rorug04G0143400 Rorug04G0143500 |
| rosa_samantha | Rh4AG205900 Rh4BG203300 Rh4CG216700 Rh4DG202800 |
| rosa_wichuraiana | Rw4G017420 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 2497, 4210 |
| AatII | GACGTC | 2 cut(s) | 131, 401 |
| Acc36I | ACCTGC | 3 cut(s) | 2497, 4210, 4864 |
| AccB1I | GGYRCC | 3 cut(s) | 1930, 4240, 4649 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 4268 |
| AccBSI | CCGCTC | 1 cut(s) | 153 |
| AccI | GTMKAC | 1 cut(s) | 1100 |
| AccII | CGCG | 4 cut(s) | 1033, 3985, 4193, 4545 |
| AclWI | GGATC | 9 cut(s) | 171, 183, 219, 1180, 1547, 1560, 2128, 4588, 4652 |
| AcoI | YGGCCR | 6 cut(s) | 39, 626, 1209, 1895, 2018, 2099 |
| AcuI | CTGAAG | 4 cut(s) | 2672, 3393, 3677, 3683 |
| AcyI | GRCGYC | 3 cut(s) | 128, 398, 3746 |
| AflIII | ACRYGT | 2 cut(s) | 2076, 2587 |
| AgeI | ACCGGT | 1 cut(s) | 4178 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 1034 |
| AjiI | CACGTC | 1 cut(s) | 636 |
| Alw21I | GWGCWC | 3 cut(s) | 1862, 1967, 2599 |
| Alw44I | GTGCAC | 1 cut(s) | 2595 |
| AlwI | GGATC | 9 cut(s) | 171, 183, 219, 1180, 1547, 1560, 2128, 4588, 4652 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 1175, 2123, 2542, 4676 |
| ApaLI | GTGCAC | 1 cut(s) | 2595 |
| ArsI | GACNNNNNNTTYG | 8 cut(s) | 38, 70, 2849, 2881, 3010, 3042, 4150, 4182 |
| AsiGI | ACCGGT | 1 cut(s) | 4178 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2093 |
| AspA2I | CCTAGG | 1 cut(s) | 4291 |
| AspLEI | GCGC | 7 cut(s) | 652, 946, 2336, 3529, 3826, 4195, 4545 |
| AsuC2I | CCSGG | 5 cut(s) | 173, 185, 209, 1305, 1463 |
| AsuII | TTCGAA | 3 cut(s) | 867, 1298, 4169 |
| AvaII | GGWCC | 8 cut(s) | 107, 169, 205, 622, 719, 824, 2615, 4822 |
| AvrII | CCTAGG | 1 cut(s) | 4291 |
| BaeGI | GKGCMC | 2 cut(s) | 2599, 4245 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2522, 2555 |
| BalI | TGGCCA | 3 cut(s) | 1211, 1897, 2101 |
| BamHI | GGATCC | 1 cut(s) | 1552 |
| BanI | GGYRCC | 3 cut(s) | 1930, 4240, 4649 |
| BanII | GRGCYC | 1 cut(s) | 1862 |
| BbsI | GAAGAC | 4 cut(s) | 70, 279, 1766, 2859 |
| Bbv12I | GWGCWC | 3 cut(s) | 1862, 1967, 2599 |
| BbvCI | CCTCAGC | 2 cut(s) | 789, 951 |
| BceAI | ACGGC | 3 cut(s) | 748, 4556, 4670 |
| BciVI | GTATCC | 1 cut(s) | 3577 |
| BclI | TGATCA | 1 cut(s) | 3778 |
| BcnI | CCSGG | 5 cut(s) | 173, 185, 209, 1305, 1463 |
| BfmI | CTRYAG | 7 cut(s) | 2478, 2879, 2885, 3143, 4055, 4680, 4785 |
| BfuAI | ACCTGC | 3 cut(s) | 2497, 4210, 4864 |
| BfuI | GTATCC | 1 cut(s) | 3577 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1903 |
| BglII | AGATCT | 2 cut(s) | 1483, 1508 |
| BlnI | CCTAGG | 1 cut(s) | 4291 |
| Bme18I | GGWCC | 8 cut(s) | 107, 169, 205, 622, 719, 824, 2615, 4822 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 1034 |
| BmgBI | CACGTC | 1 cut(s) | 636 |
| BmrI | ACTGGG | 4 cut(s) | 1070, 4239, 4332, 4735 |
| BmuI | ACTGGG | 4 cut(s) | 1070, 4239, 4332, 4735 |
| BoxI | GACNNNNGTC | 2 cut(s) | 105, 2407 |
| BpiI | GAAGAC | 4 cut(s) | 70, 279, 1766, 2859 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 427, 459, 1130, 1162 |
| BpmI | CTGGAG | 5 cut(s) | 1500, 1727, 1959, 2313, 4245 |
| Bpu10I | CCTNAGC | 3 cut(s) | 789, 951, 2625 |
| Bpu14I | TTCGAA | 3 cut(s) | 867, 1298, 4169 |
| BpuEI | CTTGAG | 2 cut(s) | 756, 3162 |
| BpuMI | CCSGG | 5 cut(s) | 173, 185, 209, 1305, 1463 |
| Bsa29I | ATCGAT | 2 cut(s) | 641, 1067 |
| BsaBI | GATNNNNATC | 2 cut(s) | 782, 1398 |
| BsaHI | GRCGYC | 3 cut(s) | 128, 398, 3746 |
| BsaI | GGTCTC | 4 cut(s) | 174, 186, 558, 582 |
| BsaJI | CCNNGG | 9 cut(s) | 1168, 1340, 1898, 2015, 2249, 2405, 3915, 4154, 4291 |
| BsaWI | WCCGGW | 3 cut(s) | 445, 619, 4178 |
| BsaXI | ACNNNNNCTCC | 6 cut(s) | 1957, 1987, 3073, 3103, 3227, 3257 |
| Bse118I | RCCGGY | 4 cut(s) | 478, 600, 4178, 4859 |
| Bse3DI | GCAATG | 6 cut(s) | 1786, 2046, 3060, 3462, 3766, 3772 |
| Bse8I | GATNNNNATC | 2 cut(s) | 782, 1398 |
| BseCI | ATCGAT | 2 cut(s) | 641, 1067 |
| BseDI | CCNNGG | 9 cut(s) | 1168, 1340, 1898, 2015, 2249, 2405, 3915, 4154, 4291 |
| BseJI | GATNNNNATC | 2 cut(s) | 782, 1398 |
| BseMI | GCAATG | 6 cut(s) | 1786, 2046, 3060, 3462, 3766, 3772 |
| BseSI | GKGCMC | 2 cut(s) | 2599, 4245 |
| BseYI | CCCAGC | 4 cut(s) | 658, 1242, 1809, 3161 |
| BsgI | GTGCAG | 5 cut(s) | 996, 2190, 2226, 2457, 3312 |
| Bsh1236I | CGCG | 4 cut(s) | 1033, 3985, 4193, 4545 |
| BshNI | GGYRCC | 3 cut(s) | 1930, 4240, 4649 |
| BshTI | ACCGGT | 1 cut(s) | 4178 |
| BshVI | ATCGAT | 2 cut(s) | 641, 1067 |
| BsiHKAI | GWGCWC | 3 cut(s) | 1862, 1967, 2599 |
| BslFI | GGGAC | 6 cut(s) | 182, 218, 1022, 4063, 4339, 4603 |
| BsmBI | CGTCTC | 4 cut(s) | 119, 621, 1447, 4263 |
| BsmFI | GGGAC | 6 cut(s) | 182, 218, 1022, 4063, 4339, 4603 |
| BsmI | GAATGC | 2 cut(s) | 3733, 4480 |
| Bso31I | GGTCTC | 4 cut(s) | 174, 186, 558, 582 |
| Bsp119I | TTCGAA | 3 cut(s) | 867, 1298, 4169 |
| Bsp1286I | GDGCHC | 4 cut(s) | 1862, 1967, 2599, 4245 |
| BspDI | ATCGAT | 2 cut(s) | 641, 1067 |
| BspFNI | CGCG | 4 cut(s) | 1033, 3985, 4193, 4545 |
| BspHI | TCATGA | 1 cut(s) | 556 |
| BspMAI | CTGCAG | 4 cut(s) | 2482, 2889, 3147, 4684 |
| BspMI | ACCTGC | 3 cut(s) | 2497, 4210, 4864 |
| BspPI | GGATC | 9 cut(s) | 171, 183, 219, 1180, 1547, 1560, 2128, 4588, 4652 |
| BspQI | GCTCTTC | 1 cut(s) | 1632 |
| BspT104I | TTCGAA | 3 cut(s) | 867, 1298, 4169 |
| BspT107I | GGYRCC | 3 cut(s) | 1930, 4240, 4649 |
| BspTNI | GGTCTC | 4 cut(s) | 174, 186, 558, 582 |
| BsrBI | CCGCTC | 1 cut(s) | 153 |
| BsrDI | GCAATG | 6 cut(s) | 1786, 2046, 3060, 3462, 3766, 3772 |
| BsrFI | RCCGGY | 4 cut(s) | 478, 600, 4178, 4859 |
| BssAI | RCCGGY | 4 cut(s) | 478, 600, 4178, 4859 |
| BssECI | CCNNGG | 9 cut(s) | 1168, 1340, 1898, 2015, 2249, 2405, 3915, 4154, 4291 |
| BssNI | GRCGYC | 3 cut(s) | 128, 398, 3746 |
| BssT1I | CCWWGG | 2 cut(s) | 4154, 4291 |
| BstACI | GRCGYC | 3 cut(s) | 128, 398, 3746 |
| BstAPI | GCANNNNNTGC | 7 cut(s) | 2204, 2489, 3119, 3640, 3688, 4390, 4676 |
| BstBI | TTCGAA | 3 cut(s) | 867, 1298, 4169 |
| BstEII | GGTNACC | 1 cut(s) | 490 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1938, 2190 |
| BstFNI | CGCG | 4 cut(s) | 1033, 3985, 4193, 4545 |
| BstHHI | GCGC | 7 cut(s) | 652, 946, 2336, 3529, 3826, 4195, 4545 |
| BstNSI | RCATGY | 4 cut(s) | 1817, 2080, 2591, 4462 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 105, 2407 |
| BstPI | GGTNACC | 1 cut(s) | 490 |
| BstSFI | CTRYAG | 7 cut(s) | 2478, 2879, 2885, 3143, 4055, 4680, 4785 |
| BstSLI | GKGCMC | 2 cut(s) | 2599, 4245 |
| BstUI | CGCG | 4 cut(s) | 1033, 3985, 4193, 4545 |
| BstV2I | GAAGAC | 4 cut(s) | 70, 279, 1766, 2859 |
| BstX2I | RGATCY | 5 cut(s) | 1172, 1483, 1508, 1552, 2120 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2284 |
| BstYI | RGATCY | 5 cut(s) | 1172, 1483, 1508, 1552, 2120 |
| Bsu15I | ATCGAT | 2 cut(s) | 641, 1067 |
| BsuI | GTATCC | 1 cut(s) | 3577 |
| BsuTUI | ATCGAT | 2 cut(s) | 641, 1067 |
| BtgZI | GCGATG | 2 cut(s) | 744, 2519 |
| BtrI | CACGTC | 1 cut(s) | 636 |
| BtsI | GCAGTG | 4 cut(s) | 1008, 1093, 3136, 4677 |
| BveI | ACCTGC | 3 cut(s) | 2497, 4210, 4864 |
| CaiI | CAGNNNCTG | 4 cut(s) | 1175, 2123, 2542, 4676 |
| CciI | TCATGA | 1 cut(s) | 556 |
| CfoI | GCGC | 7 cut(s) | 652, 946, 2336, 3529, 3826, 4195, 4545 |
| Cfr10I | RCCGGY | 4 cut(s) | 478, 600, 4178, 4859 |
| ClaI | ATCGAT | 2 cut(s) | 641, 1067 |
| CpoI | CGGWCCG | 1 cut(s) | 622 |
| CseI | GACGC | 1 cut(s) | 3754 |
| CspAI | ACCGGT | 1 cut(s) | 4178 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 4653, 4688 |
| CspI | CGGWCCG | 1 cut(s) | 622 |
| DriI | GACNNNNNGTC | 1 cut(s) | 1034 |
| EaeI | YGGCCR | 6 cut(s) | 39, 626, 1209, 1895, 2018, 2099 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 1034 |
| EciI | GGCGGA | 2 cut(s) | 378, 994 |
| Ecl136II | GAGCTC | 1 cut(s) | 1860 |
| Eco130I | CCWWGG | 2 cut(s) | 4154, 4291 |
| Eco24I | GRGCYC | 1 cut(s) | 1862 |
| Eco31I | GGTCTC | 4 cut(s) | 174, 186, 558, 582 |
| Eco47I | GGWCC | 8 cut(s) | 107, 169, 205, 622, 719, 824, 2615, 4822 |
| Eco53kI | GAGCTC | 1 cut(s) | 1860 |
| Eco57I | CTGAAG | 4 cut(s) | 2672, 3393, 3677, 3683 |
| Eco91I | GGTNACC | 1 cut(s) | 490 |
| EcoICRI | GAGCTC | 1 cut(s) | 1860 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1938, 2190 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2615 |
| EcoO65I | GGTNACC | 1 cut(s) | 490 |
| EcoRI | GAATTC | 3 cut(s) | 976, 3892, 4171 |
| EcoT14I | CCWWGG | 2 cut(s) | 4154, 4291 |
| EcoT22I | ATGCAT | 2 cut(s) | 2566, 4734 |
| EcoT38I | GRGCYC | 1 cut(s) | 1862 |
| ErhI | CCWWGG | 2 cut(s) | 4154, 4291 |
| Esp3I | CGTCTC | 4 cut(s) | 119, 621, 1447, 4263 |
| FaqI | GGGAC | 6 cut(s) | 182, 218, 1022, 4063, 4339, 4603 |
| FauNDI | CATATG | 1 cut(s) | 3639 |
| FbaI | TGATCA | 1 cut(s) | 3778 |
| FblI | GTMKAC | 1 cut(s) | 1100 |
| FriOI | GRGCYC | 1 cut(s) | 1862 |
| GlaI | GCGC | 7 cut(s) | 651, 945, 2335, 3528, 3825, 4194, 4544 |
| GsaI | CCCAGC | 4 cut(s) | 662, 1246, 1813, 3165 |
| GsuI | CTGGAG | 5 cut(s) | 1500, 1727, 1959, 2313, 4245 |
| HgaI | GACGC | 1 cut(s) | 3754 |
| HhaI | GCGC | 7 cut(s) | 652, 946, 2336, 3529, 3826, 4195, 4545 |
| Hin1I | GRCGYC | 3 cut(s) | 128, 398, 3746 |
| Hin6I | GCGC | 7 cut(s) | 650, 944, 2334, 3527, 3824, 4193, 4543 |
| HinP1I | GCGC | 7 cut(s) | 650, 944, 2334, 3527, 3824, 4193, 4543 |
| HincII | GTYRAC | 4 cut(s) | 747, 2732, 4410, 4690 |
| HindII | GTYRAC | 4 cut(s) | 747, 2732, 4410, 4690 |
| HindIII | AAGCTT | 7 cut(s) | 606, 1617, 2262, 3180, 3441, 4197, 4473 |
| HpaI | GTTAAC | 1 cut(s) | 4690 |
| Hpy99I | CGWCG | 7 cut(s) | 133, 314, 335, 400, 415, 832, 922 |
| HpyCH4IV | ACGT | 5 cut(s) | 128, 398, 614, 635, 4551 |
| HpySE526I | ACGT | 5 cut(s) | 128, 398, 614, 635, 4551 |
| Hsp92I | GRCGYC | 3 cut(s) | 128, 398, 3746 |
| HspAI | GCGC | 7 cut(s) | 650, 944, 2334, 3527, 3824, 4193, 4543 |
| KroI | GCCGGC | 1 cut(s) | 478 |
| KroNI | GCCGGC | 1 cut(s) | 480 |
| Ksp22I | TGATCA | 1 cut(s) | 3778 |
| KspAI | GTTAAC | 1 cut(s) | 4690 |
| LguI | GCTCTTC | 1 cut(s) | 1632 |
| LmnI | GCTCC | 9 cut(s) | 150, 187, 667, 989, 1498, 1962, 3110, 3559, 3613 |
| MaeII | ACGT | 5 cut(s) | 128, 398, 614, 635, 4551 |
| MbiI | CCGCTC | 1 cut(s) | 153 |
| MfeI | CAATTG | 1 cut(s) | 4337 |
| MflI | RGATCY | 5 cut(s) | 1172, 1483, 1508, 1552, 2120 |
| MhlI | GDGCHC | 4 cut(s) | 1862, 1967, 2599, 4245 |
| MlsI | TGGCCA | 3 cut(s) | 1211, 1897, 2101 |
| MluNI | TGGCCA | 3 cut(s) | 1211, 1897, 2101 |
| MlyI | GAGTC | 6 cut(s) | 83, 1044, 1259, 1271, 1333, 4717 |
| MmeI | TCCRAC | 4 cut(s) | 565, 689, 851, 4556 |
| Mox20I | TGGCCA | 3 cut(s) | 1211, 1897, 2101 |
| Mph1103I | ATGCAT | 2 cut(s) | 2566, 4734 |
| MroNI | GCCGGC | 1 cut(s) | 478 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2093 |
| MscI | TGGCCA | 3 cut(s) | 1211, 1897, 2101 |
| MseI | TTAA | 6 cut(s) | 450, 861, 1505, 1589, 3540, 4689 |
| MslI | CAYNNNNRTG | 3 cut(s) | 998, 2592, 3258 |
| Msp20I | TGGCCA | 3 cut(s) | 1211, 1897, 2101 |
| MspA1I | CMGCKG | 6 cut(s) | 475, 955, 1979, 2111, 2884, 2923 |
| MunI | CAATTG | 1 cut(s) | 4337 |
| Mva1269I | GAATGC | 2 cut(s) | 3733, 4480 |
| MvnI | CGCG | 4 cut(s) | 1033, 3985, 4193, 4545 |
| NaeI | GCCGGC | 1 cut(s) | 480 |
| NciI | CCSGG | 5 cut(s) | 173, 185, 209, 1305, 1463 |
| NdeI | CATATG | 1 cut(s) | 3639 |
| NgoMIV | GCCGGC | 1 cut(s) | 478 |
| NmeAIII | GCCGAG | 1 cut(s) | 1996 |
| NmuCI | GTSAC | 6 cut(s) | 399, 490, 1567, 3455, 4547, 4611 |
| NsiI | ATGCAT | 2 cut(s) | 2566, 4734 |
| NspI | RCATGY | 4 cut(s) | 1817, 2080, 2591, 4462 |
| NspV | TTCGAA | 3 cut(s) | 867, 1298, 4169 |
| PagI | TCATGA | 1 cut(s) | 556 |
| PaqCI | CACCTGC | 2 cut(s) | 2497, 4210 |
| PciI | ACATGT | 2 cut(s) | 2076, 2587 |
| PciSI | GCTCTTC | 1 cut(s) | 1632 |
| PcsI | WCGNNNNNNNCGW | 1 cut(s) | 3022 |
| PctI | GAATGC | 2 cut(s) | 3733, 4480 |
| PdiI | GCCGGC | 1 cut(s) | 480 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2093 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 4268 |
| PfoI | TCCNGGA | 1 cut(s) | 2521 |
| PinAI | ACCGGT | 1 cut(s) | 4178 |
| PleI | GAGTC | 6 cut(s) | 83, 1043, 1258, 1270, 1332, 4717 |
| PpsI | GAGTC | 6 cut(s) | 83, 1043, 1258, 1270, 1332, 4717 |
| PpuMI | RGGWCCY | 1 cut(s) | 2615 |
| PscI | ACATGT | 2 cut(s) | 2076, 2587 |
| PshAI | GACNNNNGTC | 2 cut(s) | 105, 2407 |
| Psp124BI | GAGCTC | 1 cut(s) | 1862 |
| Psp5II | RGGWCCY | 1 cut(s) | 2615 |
| PspEI | GGTNACC | 1 cut(s) | 490 |
| PspFI | CCCAGC | 4 cut(s) | 658, 1242, 1809, 3161 |
| PspPPI | RGGWCCY | 1 cut(s) | 2615 |
| PstI | CTGCAG | 4 cut(s) | 2482, 2889, 3147, 4684 |
| PstNI | CAGNNNCTG | 4 cut(s) | 1175, 2123, 2542, 4676 |
| PsuI | RGATCY | 5 cut(s) | 1172, 1483, 1508, 1552, 2120 |
| PvuII | CAGCTG | 4 cut(s) | 955, 1979, 2111, 2884 |
| RseI | CAYNNNNRTG | 3 cut(s) | 998, 2592, 3258 |
| Rsr2I | CGGWCCG | 1 cut(s) | 622 |
| RsrII | CGGWCCG | 1 cut(s) | 622 |
| SacI | GAGCTC | 1 cut(s) | 1862 |
| SapI | GCTCTTC | 1 cut(s) | 1632 |
| SaqAI | TTAA | 6 cut(s) | 450, 861, 1505, 1589, 3540, 4689 |
| SchI | GAGTC | 6 cut(s) | 83, 1044, 1259, 1271, 1333, 4717 |
| SduI | GDGCHC | 4 cut(s) | 1862, 1967, 2599, 4245 |
| SfcI | CTRYAG | 7 cut(s) | 2478, 2879, 2885, 3143, 4055, 4680, 4785 |
| SfuI | TTCGAA | 3 cut(s) | 867, 1298, 4169 |
| SinI | GGWCC | 8 cut(s) | 107, 169, 205, 622, 719, 824, 2615, 4822 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 998, 2592, 3258 |
| SmlI | CTYRAG | 2 cut(s) | 771, 3177 |
| SmoI | CTYRAG | 2 cut(s) | 771, 3177 |
| SspI | AATATT | 2 cut(s) | 1735, 3034 |
| SstI | GAGCTC | 1 cut(s) | 1862 |
| StyI | CCWWGG | 2 cut(s) | 4154, 4291 |
| TaiI | ACGT | 5 cut(s) | 131, 401, 617, 638, 4554 |
| TaqII | GACCGA | 1 cut(s) | 210 |
| TatI | WGTACW | 3 cut(s) | 3312, 4440, 4490 |
| Tru1I | TTAA | 6 cut(s) | 450, 861, 1505, 1589, 3540, 4689 |
| Tru9I | TTAA | 6 cut(s) | 450, 861, 1505, 1589, 3540, 4689 |
| TseFI | GTSAC | 6 cut(s) | 399, 490, 1567, 3455, 4547, 4611 |
| Tsp45I | GTSAC | 6 cut(s) | 399, 490, 1567, 3455, 4547, 4611 |
| TspGWI | ACGGA | 6 cut(s) | 273, 505, 1598, 1673, 1870, 3475 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 4268 |
| VneI | GTGCAC | 1 cut(s) | 2595 |
| VpaK11BI | GGWCC | 8 cut(s) | 107, 169, 205, 622, 719, 824, 2615, 4822 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1938, 2190 |
| XbaI | TCTAGA | 1 cut(s) | 908 |
| XceI | RCATGY | 4 cut(s) | 1817, 2080, 2591, 4462 |
| XmaJI | CCTAGG | 1 cut(s) | 4291 |
| XmiI | GTMKAC | 1 cut(s) | 1100 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2093 |
| ZraI | GACGTC | 2 cut(s) | 129, 399 |
| Zsp2I | ATGCAT | 2 cut(s) | 2566, 4734 |