Protein TIME FOR
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G22380 AT3G22380 AT3G22380 |
| fragaria_vesca | FvH4_4g15230 FvH4_4g15230 |
| malus_domestica | MD13G1190800.v1.1 MD16G1127600.v1.1 MD16G1191200.v1.1 |
| prunus_persica | Prupe.1G011200_v2.0.a1 Prupe.1G011200_v2.0.a1 |
| pyrus_communis | pycom07g23630 pycom13g16390 pycom16g16090 |
| rosa_chinensis | RchiOBHm_Chr4g0416621 |
| rosa_laevigata | RLG00000007965 |
| rosa_multiflora | Rmu_co8150674.1_g000001 Rmu_sc0003722.1_g000056 |
| rosa_roxburghii | Rroxscaffold_5G00360500 |
| rosa_rugosa | Rorug04G0143400 Rorug04G0143500 |
| rosa_samantha | Rh4AG205900 Rh4BG203300 Rh4CG216700 Rh4DG202800 |
| rosa_wichuraiana | Rw4G017420 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 556, 769 |
| AatII | GACGTC | 2 cut(s) | 131, 980 |
| Acc16I | TGCGCA | 3 cut(s) | 1984, 2250, 3279 |
| AccB1I | GGYRCC | 5 cut(s) | 523, 1030, 1882, 2293, 3080 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2518 |
| AccBSI | CCGCTC | 1 cut(s) | 481 |
| AccI | GTMKAC | 1 cut(s) | 548 |
| AccII | CGCG | 6 cut(s) | 201, 641, 803, 1051, 1283, 2911 |
| AccIII | TCCGGA | 1 cut(s) | 699 |
| AclWI | GGATC | 6 cut(s) | 174, 216, 1186, 2080, 4210, 4568 |
| AcoI | YGGCCR | 7 cut(s) | 632, 734, 1110, 1847, 1970, 2051, 4120 |
| AcsI | RAATTY | 9 cut(s) | 600, 994, 1159, 1426, 1615, 1711, 3001, 3740, 3820 |
| AcuI | CTGAAG | 3 cut(s) | 731, 1911, 4340 |
| AcyI | GRCGYC | 6 cut(s) | 128, 767, 918, 977, 1883, 4468 |
| AfaI | GTAC | 8 cut(s) | 815, 1821, 3269, 3701, 4255, 4695, 4716, 4735 |
| AfeI | AGCGCT | 1 cut(s) | 4249 |
| AhdI | GACNNNNNGTC | 2 cut(s) | 1152, 2947 |
| AhlI | ACTAGT | 1 cut(s) | 4091 |
| AleI | CACNNNNGTG | 1 cut(s) | 72 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 4078, 4110 |
| Alw21I | GWGCWC | 5 cut(s) | 1919, 2271, 2419, 2575, 4568 |
| Alw44I | GTGCAC | 1 cut(s) | 2415 |
| AlwI | GGATC | 6 cut(s) | 174, 216, 1186, 2080, 4210, 4568 |
| AlwNI | CAGNNNCTG | 6 cut(s) | 1181, 2357, 2375, 2899, 3545, 4595 |
| Ama87I | CYCGRG | 1 cut(s) | 4516 |
| Aor13HI | TCCGGA | 1 cut(s) | 699 |
| Aor51HI | AGCGCT | 1 cut(s) | 4249 |
| ApaLI | GTGCAC | 1 cut(s) | 2415 |
| ApoI | RAATTY | 9 cut(s) | 600, 994, 1159, 1426, 1615, 1711, 3001, 3740, 3820 |
| ArsI | GACNNNNNNTTYG | 8 cut(s) | 38, 70, 714, 734, 746, 766, 4078, 4110 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 434, 2012, 2045 |
| AspA2I | CCTAGG | 1 cut(s) | 4219 |
| AspLEI | GCGC | 7 cut(s) | 641, 1885, 1985, 2251, 3280, 4250, 4366 |
| AsuC2I | CCSGG | 5 cut(s) | 188, 659, 1079, 1851, 4678 |
| AsuII | TTCGAA | 1 cut(s) | 882 |
| AvaI | CYCGRG | 1 cut(s) | 4516 |
| AvrII | CCTAGG | 1 cut(s) | 4219 |
| BaeGI | GKGCMC | 4 cut(s) | 528, 2296, 2419, 4173 |
| BalI | TGGCCA | 1 cut(s) | 4122 |
| BanI | GGYRCC | 5 cut(s) | 523, 1030, 1882, 2293, 3080 |
| BanII | GRGCYC | 1 cut(s) | 1817 |
| BauI | CACGAG | 1 cut(s) | 2973 |
| BbsI | GAAGAC | 8 cut(s) | 276, 318, 330, 1194, 1745, 2946, 3954, 4233 |
| Bbv12I | GWGCWC | 5 cut(s) | 1919, 2271, 2419, 2575, 4568 |
| BccI | CCATC | 9 cut(s) | 98, 394, 643, 869, 1477, 1496, 1904, 2658, 4018 |
| BceAI | ACGGC | 9 cut(s) | 74, 289, 411, 780, 940, 1010, 1125, 1628, 2674 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 387, 421, 2049, 2083 |
| BciVI | GTATCC | 1 cut(s) | 1912 |
| BclI | TGATCA | 3 cut(s) | 1126, 3706, 4651 |
| BcnI | CCSGG | 5 cut(s) | 188, 659, 1079, 1851, 4678 |
| BcuI | ACTAGT | 1 cut(s) | 4091 |
| BfaI | CTAG | 5 cut(s) | 999, 2298, 4092, 4220, 4731 |
| BfoI | RGCGCY | 2 cut(s) | 1886, 4251 |
| BfuI | GTATCC | 1 cut(s) | 1912 |
| BglI | GCCNNNNNGGC | 3 cut(s) | 631, 838, 1855 |
| BglII | AGATCT | 1 cut(s) | 1477 |
| BlnI | CCTAGG | 1 cut(s) | 4219 |
| BlpI | GCTNAGC | 2 cut(s) | 1251, 1782 |
| BmeRI | GACNNNNNGTC | 2 cut(s) | 1152, 2947 |
| BmeT110I | CYCGRG | 1 cut(s) | 4516 |
| BmrI | ACTGGG | 2 cut(s) | 2506, 4167 |
| BmuI | ACTGGG | 2 cut(s) | 2506, 4167 |
| BoxI | GACNNNNGTC | 2 cut(s) | 105, 2371 |
| BpiI | GAAGAC | 8 cut(s) | 276, 318, 330, 1194, 1745, 2946, 3954, 4233 |
| BpmI | CTGGAG | 8 cut(s) | 78, 1265, 1476, 2103, 2255, 2451, 3218, 3351 |
| Bpu10I | CCTNAGC | 2 cut(s) | 1137, 4476 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1251, 1782 |
| Bpu14I | TTCGAA | 1 cut(s) | 882 |
| BpuEI | CTTGAG | 3 cut(s) | 1209, 2586, 3960 |
| BpuMI | CCSGG | 5 cut(s) | 188, 659, 1079, 1851, 4678 |
| BsaBI | GATNNNNATC | 3 cut(s) | 159, 165, 207 |
| BsaHI | GRCGYC | 6 cut(s) | 128, 767, 918, 977, 1883, 4468 |
| BsaI | GGTCTC | 4 cut(s) | 177, 189, 588, 2779 |
| BsaWI | WCCGGW | 6 cut(s) | 109, 426, 699, 1151, 2411, 4018 |
| Bse118I | RCCGGY | 6 cut(s) | 442, 1841, 2053, 2557, 4750, 4775 |
| Bse3DI | GCAATG | 7 cut(s) | 1990, 1998, 2478, 2559, 2613, 3015, 3408 |
| Bse8I | GATNNNNATC | 3 cut(s) | 159, 165, 207 |
| BseAI | TCCGGA | 1 cut(s) | 699 |
| BseJI | GATNNNNATC | 3 cut(s) | 159, 165, 207 |
| BseMI | GCAATG | 7 cut(s) | 1990, 1998, 2478, 2559, 2613, 3015, 3408 |
| BseMII | CTCAG | 8 cut(s) | 97, 983, 1004, 1265, 1617, 3914, 4157, 4467 |
| BseRI | GAGGAG | 6 cut(s) | 308, 994, 1479, 2416, 3348, 4005 |
| BseSI | GKGCMC | 4 cut(s) | 528, 2296, 2419, 4173 |
| BseX3I | CGGCCG | 1 cut(s) | 734 |
| BseYI | CCCAGC | 2 cut(s) | 3131, 3573 |
| BsgI | GTGCAG | 3 cut(s) | 1625, 2145, 3270 |
| Bsh1236I | CGCG | 6 cut(s) | 201, 641, 803, 1051, 1283, 2911 |
| Bsh1285I | CGRYCG | 2 cut(s) | 737, 3521 |
| BshNI | GGYRCC | 5 cut(s) | 523, 1030, 1882, 2293, 3080 |
| BsiEI | CGRYCG | 2 cut(s) | 737, 3521 |
| BsiHKAI | GWGCWC | 5 cut(s) | 1919, 2271, 2419, 2575, 4568 |
| BsiHKCI | CYCGRG | 1 cut(s) | 4516 |
| BslFI | GGGAC | 8 cut(s) | 191, 203, 1080, 1421, 2740, 3868, 4193, 4522 |
| BsmBI | CGTCTC | 3 cut(s) | 119, 2697, 4191 |
| BsmFI | GGGAC | 8 cut(s) | 191, 203, 1080, 1421, 2740, 3868, 4193, 4522 |
| BsmI | GAATGC | 1 cut(s) | 2443 |
| Bso31I | GGTCTC | 4 cut(s) | 177, 189, 588, 2779 |
| BsoBI | CYCGRG | 1 cut(s) | 4516 |
| Bsp119I | TTCGAA | 1 cut(s) | 882 |
| Bsp1286I | GDGCHC | 9 cut(s) | 528, 1817, 1919, 2271, 2296, 2419, 2575, 4173, 4568 |
| Bsp13I | TCCGGA | 1 cut(s) | 699 |
| Bsp1407I | TGTACA | 1 cut(s) | 4714 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1251, 1782 |
| Bsp19I | CCATGG | 2 cut(s) | 1905, 4456 |
| BspCNI | CTCAG | 8 cut(s) | 96, 982, 1003, 1264, 1618, 3913, 4156, 4468 |
| BspEI | TCCGGA | 1 cut(s) | 699 |
| BspFNI | CGCG | 6 cut(s) | 201, 641, 803, 1051, 1283, 2911 |
| BspMAI | CTGCAG | 6 cut(s) | 1186, 1725, 2464, 2877, 4600, 4666 |
| BspPI | GGATC | 6 cut(s) | 174, 216, 1186, 2080, 4210, 4568 |
| BspQI | GCTCTTC | 1 cut(s) | 425 |
| BspT104I | TTCGAA | 1 cut(s) | 882 |
| BspT107I | GGYRCC | 5 cut(s) | 523, 1030, 1882, 2293, 3080 |
| BspTNI | GGTCTC | 4 cut(s) | 177, 189, 588, 2779 |
| BsrBI | CCGCTC | 1 cut(s) | 481 |
| BsrDI | GCAATG | 7 cut(s) | 1990, 1998, 2478, 2559, 2613, 3015, 3408 |
| BsrFI | RCCGGY | 6 cut(s) | 442, 1841, 2053, 2557, 4750, 4775 |
| BsrGI | TGTACA | 1 cut(s) | 4714 |
| BssAI | RCCGGY | 6 cut(s) | 442, 1841, 2053, 2557, 4750, 4775 |
| BssNI | GRCGYC | 6 cut(s) | 128, 767, 918, 977, 1883, 4468 |
| BssSI | CACGAG | 1 cut(s) | 2973 |
| BssT1I | CCWWGG | 3 cut(s) | 1905, 4219, 4456 |
| Bst2BI | CACGAG | 1 cut(s) | 2973 |
| Bst4CI | ACNGT | 9 cut(s) | 540, 1094, 1435, 1804, 1921, 3397, 3813, 4168, 4738 |
| Bst6I | CTCTTC | 6 cut(s) | 425, 548, 698, 2434, 3351, 3730 |
| BstACI | GRCGYC | 6 cut(s) | 128, 767, 918, 977, 1883, 4468 |
| BstAPI | GCANNNNNTGC | 7 cut(s) | 2266, 2281, 2456, 2899, 3080, 3583, 4595 |
| BstAUI | TGTACA | 1 cut(s) | 4714 |
| BstBI | TTCGAA | 1 cut(s) | 882 |
| BstDSI | CCRYGG | 4 cut(s) | 1026, 1644, 1905, 4456 |
| BstEII | GGTNACC | 1 cut(s) | 496 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1890 |
| BstFNI | CGCG | 6 cut(s) | 201, 641, 803, 1051, 1283, 2911 |
| BstH2I | RGCGCY | 2 cut(s) | 1886, 4251 |
| BstHHI | GCGC | 7 cut(s) | 641, 1885, 1985, 2251, 3280, 4250, 4366 |
| BstMCI | CGRYCG | 2 cut(s) | 737, 3521 |
| BstNSI | RCATGY | 3 cut(s) | 2906, 4393, 4721 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 105, 2371 |
| BstPI | GGTNACC | 1 cut(s) | 496 |
| BstSLI | GKGCMC | 4 cut(s) | 528, 2296, 2419, 4173 |
| BstUI | CGCG | 6 cut(s) | 201, 641, 803, 1051, 1283, 2911 |
| BstV2I | GAAGAC | 8 cut(s) | 276, 318, 330, 1194, 1745, 2946, 3954, 4233 |
| BstX2I | RGATCY | 3 cut(s) | 1178, 1477, 2072 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 1120 |
| BstYI | RGATCY | 3 cut(s) | 1178, 1477, 2072 |
| BstZI | CGGCCG | 1 cut(s) | 734 |
| BsuI | GTATCC | 1 cut(s) | 1912 |
| BtgI | CCRYGG | 4 cut(s) | 1026, 1644, 1905, 4456 |
| BtgZI | GCGATG | 2 cut(s) | 606, 1224 |
| BtsIMutI | CAGTG | 6 cut(s) | 1308, 1412, 3091, 3432, 3818, 4173 |
| CaiI | CAGNNNCTG | 6 cut(s) | 1181, 2357, 2375, 2899, 3545, 4595 |
| CfoI | GCGC | 7 cut(s) | 641, 1885, 1985, 2251, 3280, 4250, 4366 |
| Cfr10I | RCCGGY | 6 cut(s) | 442, 1841, 2053, 2557, 4750, 4775 |
| CpoI | CGGWCCG | 1 cut(s) | 1154 |
| CseI | GACGC | 6 cut(s) | 534, 630, 756, 926, 2900, 4476 |
| Csp6I | GTAC | 8 cut(s) | 814, 1820, 3268, 3700, 4254, 4694, 4715, 4734 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2220, 2255 |
| CspI | CGGWCCG | 1 cut(s) | 1154 |
| CviQI | GTAC | 8 cut(s) | 814, 1820, 3268, 3700, 4254, 4694, 4715, 4734 |
| DinI | GGCGCC | 1 cut(s) | 1884 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 556, 769 |
| DriI | GACNNNNNGTC | 2 cut(s) | 1152, 2947 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 556, 769 |
| EaeI | YGGCCR | 7 cut(s) | 632, 734, 1110, 1847, 1970, 2051, 4120 |
| EagI | CGGCCG | 1 cut(s) | 734 |
| Eam1104I | CTCTTC | 6 cut(s) | 425, 548, 698, 2434, 3351, 3730 |
| Eam1105I | GACNNNNNGTC | 2 cut(s) | 1152, 2947 |
| EarI | CTCTTC | 6 cut(s) | 425, 548, 698, 2434, 3351, 3730 |
| EciI | GGCGGA | 5 cut(s) | 76, 247, 363, 1012, 3928 |
| EclXI | CGGCCG | 1 cut(s) | 734 |
| Eco130I | CCWWGG | 3 cut(s) | 1905, 4219, 4456 |
| Eco24I | GRGCYC | 1 cut(s) | 1817 |
| Eco31I | GGTCTC | 4 cut(s) | 177, 189, 588, 2779 |
| Eco32I | GATATC | 2 cut(s) | 747, 1833 |
| Eco47III | AGCGCT | 1 cut(s) | 4249 |
| Eco52I | CGGCCG | 1 cut(s) | 734 |
| Eco57I | CTGAAG | 3 cut(s) | 731, 1911, 4340 |
| Eco88I | CYCGRG | 1 cut(s) | 4516 |
| Eco91I | GGTNACC | 1 cut(s) | 496 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1890 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2591 |
| EcoO65I | GGTNACC | 1 cut(s) | 496 |
| EcoRI | GAATTC | 3 cut(s) | 994, 1426, 3820 |
| EcoRV | GATATC | 2 cut(s) | 747, 1833 |
| EcoT14I | CCWWGG | 3 cut(s) | 1905, 4219, 4456 |
| EcoT22I | ATGCAT | 2 cut(s) | 3229, 4650 |
| EcoT38I | GRGCYC | 1 cut(s) | 1817 |
| EgeI | GGCGCC | 1 cut(s) | 1884 |
| EheI | GGCGCC | 1 cut(s) | 1884 |
| ErhI | CCWWGG | 3 cut(s) | 1905, 4219, 4456 |
| Esp3I | CGTCTC | 3 cut(s) | 119, 2697, 4191 |
| FaqI | GGGAC | 8 cut(s) | 191, 203, 1080, 1421, 2740, 3868, 4193, 4522 |
| FauI | CCCGC | 6 cut(s) | 1190, 1847, 2810, 3030, 3370, 4780 |
| FbaI | TGATCA | 3 cut(s) | 1126, 3706, 4651 |
| FblI | GTMKAC | 1 cut(s) | 548 |
| FriOI | GRGCYC | 1 cut(s) | 1817 |
| FspBI | CTAG | 5 cut(s) | 999, 2298, 4092, 4220, 4731 |
| FspI | TGCGCA | 3 cut(s) | 1984, 2250, 3279 |
| GlaI | GCGC | 7 cut(s) | 640, 1884, 1984, 2250, 3279, 4249, 4365 |
| GsaI | CCCAGC | 2 cut(s) | 3135, 3577 |
| GsuI | CTGGAG | 8 cut(s) | 78, 1265, 1476, 2103, 2255, 2451, 3218, 3351 |
| HaeII | RGCGCY | 2 cut(s) | 1886, 4251 |
| HgaI | GACGC | 6 cut(s) | 534, 630, 756, 926, 2900, 4476 |
| HhaI | GCGC | 7 cut(s) | 641, 1885, 1985, 2251, 3280, 4250, 4366 |
| Hin1I | GRCGYC | 6 cut(s) | 128, 767, 918, 977, 1883, 4468 |
| Hin6I | GCGC | 7 cut(s) | 639, 1883, 1983, 2249, 3278, 4248, 4364 |
| HinP1I | GCGC | 7 cut(s) | 639, 1883, 1983, 2249, 3278, 4248, 4364 |
| HincII | GTYRAC | 8 cut(s) | 393, 549, 975, 2711, 2915, 2952, 3496, 3873 |
| HindII | GTYRAC | 8 cut(s) | 393, 549, 975, 2711, 2915, 2952, 3496, 3873 |
| HindIII | AAGCTT | 1 cut(s) | 3384 |
| HpaI | GTTAAC | 1 cut(s) | 3496 |
| HpyCH4III | ACNGT | 9 cut(s) | 540, 1094, 1435, 1804, 1921, 3397, 3813, 4168, 4738 |
| HpyCH4IV | ACGT | 3 cut(s) | 128, 977, 4238 |
| HpySE526I | ACGT | 3 cut(s) | 128, 977, 4238 |
| Hsp92I | GRCGYC | 6 cut(s) | 128, 767, 918, 977, 1883, 4468 |
| HspAI | GCGC | 7 cut(s) | 639, 1883, 1983, 2249, 3278, 4248, 4364 |
| KasI | GGCGCC | 1 cut(s) | 1882 |
| Kpn2I | TCCGGA | 1 cut(s) | 699 |
| KroI | GCCGGC | 1 cut(s) | 2557 |
| KroNI | GCCGGC | 1 cut(s) | 2559 |
| Ksp22I | TGATCA | 3 cut(s) | 1126, 3706, 4651 |
| KspAI | GTTAAC | 1 cut(s) | 3496 |
| LguI | GCTCTTC | 1 cut(s) | 425 |
| MaeI | CTAG | 5 cut(s) | 999, 2298, 4092, 4220, 4731 |
| MaeII | ACGT | 3 cut(s) | 128, 977, 4238 |
| MbiI | CCGCTC | 1 cut(s) | 481 |
| MfeI | CAATTG | 3 cut(s) | 3054, 4265, 4349 |
| MflI | RGATCY | 3 cut(s) | 1178, 1477, 2072 |
| MhlI | GDGCHC | 9 cut(s) | 528, 1817, 1919, 2271, 2296, 2419, 2575, 4173, 4568 |
| MlsI | TGGCCA | 1 cut(s) | 4122 |
| MluNI | TGGCCA | 1 cut(s) | 4122 |
| Mly113I | GGCGCC | 1 cut(s) | 1883 |
| MlyI | GAGTC | 3 cut(s) | 83, 1268, 1330 |
| MmeI | TCCRAC | 4 cut(s) | 571, 689, 3379, 3821 |
| Mox20I | TGGCCA | 1 cut(s) | 4122 |
| Mph1103I | ATGCAT | 2 cut(s) | 3229, 4650 |
| MroI | TCCGGA | 1 cut(s) | 699 |
| MroNI | GCCGGC | 1 cut(s) | 2557 |
| MroXI | GAANNNNTTC | 3 cut(s) | 434, 2012, 2045 |
| MscI | TGGCCA | 1 cut(s) | 4122 |
| MseI | TTAA | 8 cut(s) | 419, 456, 876, 1332, 1544, 2619, 3176, 3495 |
| MslI | CAYNNNNRTG | 2 cut(s) | 72, 2796 |
| Msp20I | TGGCCA | 1 cut(s) | 4122 |
| MunI | CAATTG | 3 cut(s) | 3054, 4265, 4349 |
| Mva1269I | GAATGC | 1 cut(s) | 2443 |
| MvnI | CGCG | 6 cut(s) | 201, 641, 803, 1051, 1283, 2911 |
| NaeI | GCCGGC | 1 cut(s) | 2559 |
| NarI | GGCGCC | 1 cut(s) | 1883 |
| NciI | CCSGG | 5 cut(s) | 188, 659, 1079, 1851, 4678 |
| NcoI | CCATGG | 2 cut(s) | 1905, 4456 |
| NgoMIV | GCCGGC | 1 cut(s) | 2557 |
| NmeAIII | GCCGAG | 1 cut(s) | 1948 |
| NmuCI | GTSAC | 7 cut(s) | 54, 496, 1009, 1285, 3430, 4491, 4530 |
| NsbI | TGCGCA | 3 cut(s) | 1984, 2250, 3279 |
| NsiI | ATGCAT | 2 cut(s) | 3229, 4650 |
| NspI | RCATGY | 3 cut(s) | 2906, 4393, 4721 |
| NspV | TTCGAA | 1 cut(s) | 882 |
| OliI | CACNNNNGTG | 1 cut(s) | 72 |
| PaeI | GCATGC | 1 cut(s) | 2906 |
| PaeR7I | CTCGAG | 1 cut(s) | 4516 |
| PciSI | GCTCTTC | 1 cut(s) | 425 |
| PcsI | WCGNNNNNNNCGW | 6 cut(s) | 279, 288, 312, 944, 953, 2971 |
| PctI | GAATGC | 1 cut(s) | 2443 |
| PdiI | GCCGGC | 1 cut(s) | 2559 |
| PdmI | GAANNNNTTC | 3 cut(s) | 434, 2012, 2045 |
| PfeI | GAWTC | 9 cut(s) | 884, 1313, 2041, 2155, 2896, 3220, 3341, 3589, 3625 |
| PflFI | GACNNNGTC | 3 cut(s) | 766, 1291, 4135 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2518 |
| Ple19I | CGATCG | 1 cut(s) | 3521 |
| PleI | GAGTC | 3 cut(s) | 83, 1267, 1329 |
| PluTI | GGCGCC | 1 cut(s) | 1886 |
| PpsI | GAGTC | 3 cut(s) | 83, 1267, 1329 |
| PpuMI | RGGWCCY | 1 cut(s) | 2591 |
| PshAI | GACNNNNGTC | 2 cut(s) | 105, 2371 |
| Psp5II | RGGWCCY | 1 cut(s) | 2591 |
| PspEI | GGTNACC | 1 cut(s) | 496 |
| PspFI | CCCAGC | 2 cut(s) | 3131, 3573 |
| PspPPI | RGGWCCY | 1 cut(s) | 2591 |
| PspXI | VCTCGAGB | 1 cut(s) | 4516 |
| PstI | CTGCAG | 6 cut(s) | 1186, 1725, 2464, 2877, 4600, 4666 |
| PstNI | CAGNNNCTG | 6 cut(s) | 1181, 2357, 2375, 2899, 3545, 4595 |
| PsuI | RGATCY | 3 cut(s) | 1178, 1477, 2072 |
| PsyI | GACNNNGTC | 3 cut(s) | 766, 1291, 4135 |
| PvuI | CGATCG | 1 cut(s) | 3521 |
| PvuII | CAGCTG | 8 cut(s) | 1187, 1664, 2063, 2354, 2447, 2872, 3542, 4592 |
| RsaI | GTAC | 8 cut(s) | 815, 1821, 3269, 3701, 4255, 4695, 4716, 4735 |
| RsaNI | GTAC | 8 cut(s) | 814, 1820, 3268, 3700, 4254, 4694, 4715, 4734 |
| RseI | CAYNNNNRTG | 2 cut(s) | 72, 2796 |
| Rsr2I | CGGWCCG | 1 cut(s) | 1154 |
| RsrII | CGGWCCG | 1 cut(s) | 1154 |
| SalI | GTCGAC | 1 cut(s) | 547 |
| SapI | GCTCTTC | 1 cut(s) | 425 |
| SaqAI | TTAA | 8 cut(s) | 419, 456, 876, 1332, 1544, 2619, 3176, 3495 |
| SchI | GAGTC | 3 cut(s) | 83, 1268, 1330 |
| SduI | GDGCHC | 9 cut(s) | 528, 1817, 1919, 2271, 2296, 2419, 2575, 4173, 4568 |
| SfoI | GGCGCC | 1 cut(s) | 1884 |
| Sfr274I | CTCGAG | 1 cut(s) | 4516 |
| SfuI | TTCGAA | 1 cut(s) | 882 |
| SgrAI | CRCCGGYG | 1 cut(s) | 4775 |
| SgrDI | CGTCGACG | 1 cut(s) | 547 |
| SlaI | CTCGAG | 1 cut(s) | 4516 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 72, 2796 |
| SmlI | CTYRAG | 4 cut(s) | 1224, 2601, 3975, 4516 |
| SmoI | CTYRAG | 4 cut(s) | 1224, 2601, 3975, 4516 |
| SpeI | ACTAGT | 1 cut(s) | 4091 |
| SphI | GCATGC | 1 cut(s) | 2906 |
| SspDI | GGCGCC | 1 cut(s) | 1882 |
| SspI | AATATT | 2 cut(s) | 2137, 2305 |
| SspMI | CTAG | 5 cut(s) | 999, 2298, 4092, 4220, 4731 |
| StyI | CCWWGG | 3 cut(s) | 1905, 4219, 4456 |
| TaaI | ACNGT | 9 cut(s) | 540, 1094, 1435, 1804, 1921, 3397, 3813, 4168, 4738 |
| TaiI | ACGT | 3 cut(s) | 131, 980, 4241 |
| TaqII | GACCGA | 2 cut(s) | 195, 207 |
| TatI | WGTACW | 3 cut(s) | 3267, 3699, 4714 |
| TfiI | GAWTC | 9 cut(s) | 884, 1313, 2041, 2155, 2896, 3220, 3341, 3589, 3625 |
| Tru1I | TTAA | 8 cut(s) | 419, 456, 876, 1332, 1544, 2619, 3176, 3495 |
| Tru9I | TTAA | 8 cut(s) | 419, 456, 876, 1332, 1544, 2619, 3176, 3495 |
| TscAI | CASTG | 6 cut(s) | 1308, 1419, 3091, 3439, 3818, 4173 |
| TseFI | GTSAC | 7 cut(s) | 54, 496, 1009, 1285, 3430, 4491, 4530 |
| Tsp45I | GTSAC | 7 cut(s) | 54, 496, 1009, 1285, 3430, 4491, 4530 |
| TspGWI | ACGGA | 6 cut(s) | 270, 345, 735, 1513, 1553, 1923 |
| TspRI | CASTG | 6 cut(s) | 1308, 1419, 3091, 3439, 3818, 4173 |
| Tth111I | GACNNNGTC | 3 cut(s) | 766, 1291, 4135 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2518 |
| VneI | GTGCAC | 1 cut(s) | 2415 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1890 |
| XapI | RAATTY | 9 cut(s) | 600, 994, 1159, 1426, 1615, 1711, 3001, 3740, 3820 |
| XceI | RCATGY | 3 cut(s) | 2906, 4393, 4721 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 1024 |
| XhoI | CTCGAG | 1 cut(s) | 4516 |
| XmaJI | CCTAGG | 1 cut(s) | 4219 |
| XmiI | GTMKAC | 1 cut(s) | 548 |
| XmnI | GAANNNNTTC | 3 cut(s) | 434, 2012, 2045 |
| XspI | CTAG | 5 cut(s) | 999, 2298, 4092, 4220, 4731 |
| ZraI | GACGTC | 2 cut(s) | 129, 978 |
| Zsp2I | ATGCAT | 2 cut(s) | 3229, 4650 |