Protein TIME FOR
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G22380 AT3G22380 AT3G22380 |
| fragaria_vesca | FvH4_4g15230 FvH4_4g15230 |
| malus_domestica | MD13G1190800.v1.1 MD16G1127600.v1.1 MD16G1191200.v1.1 |
| prunus_persica | Prupe.1G011200_v2.0.a1 Prupe.1G011200_v2.0.a1 |
| pyrus_communis | pycom07g23630 pycom13g16390 pycom16g16090 |
| rosa_chinensis | RchiOBHm_Chr4g0416621 |
| rosa_laevigata | RLG00000007965 |
| rosa_multiflora | Rmu_co8150674.1_g000001 Rmu_sc0003722.1_g000056 |
| rosa_roxburghii | Rroxscaffold_5G00360500 |
| rosa_rugosa | Rorug04G0143400 Rorug04G0143500 |
| rosa_samantha | Rh4AG205900 Rh4BG203300 Rh4CG216700 Rh4DG202800 |
| rosa_wichuraiana | Rw4G017420 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AasI | GACNNNNNNGTC | 2 cut(s) | 559, 769 |
| AatII | GACGTC | 2 cut(s) | 626, 980 |
| Acc36I | ACCTGC | 1 cut(s) | 2949 |
| AccB1I | GGYRCC | 3 cut(s) | 526, 1918, 3224 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2557 |
| AccBSI | CCGCTC | 2 cut(s) | 484, 2396 |
| AccI | GTMKAC | 4 cut(s) | 551, 653, 755, 1115 |
| AccII | CGCG | 5 cut(s) | 195, 273, 803, 1051, 2953 |
| AccIII | TCCGGA | 2 cut(s) | 699, 3373 |
| AclWI | GGATC | 6 cut(s) | 180, 210, 1195, 1541, 2116, 4649 |
| AcoI | YGGCCR | 7 cut(s) | 635, 734, 1119, 1886, 2006, 2087, 4189 |
| AcsI | RAATTY | 9 cut(s) | 603, 905, 994, 1168, 1309, 1654, 1750, 3043, 3889 |
| AcuI | CTGAAG | 3 cut(s) | 731, 1947, 3683 |
| AcyI | GRCGYC | 6 cut(s) | 623, 656, 767, 918, 977, 1919 |
| AfaI | GTAC | 8 cut(s) | 815, 1217, 1860, 2033, 3770, 4324, 4776, 4797 |
| AfeI | AGCGCT | 1 cut(s) | 4318 |
| AhdI | GACNNNNNGTC | 1 cut(s) | 2989 |
| AjnI | CCWGG | 9 cut(s) | 612, 1183, 1927, 2176, 2407, 3238, 3479, 4151, 4777 |
| Alw21I | GWGCWC | 4 cut(s) | 1955, 2021, 2307, 2614 |
| Alw44I | GTGCAC | 2 cut(s) | 2017, 2610 |
| AlwI | GGATC | 6 cut(s) | 180, 210, 1195, 1541, 2116, 4649 |
| AlwNI | CAGNNNCTG | 3 cut(s) | 1190, 2941, 3605 |
| Ama87I | CYCGRG | 1 cut(s) | 2324 |
| Aor13HI | TCCGGA | 2 cut(s) | 699, 3373 |
| Aor51HI | AGCGCT | 1 cut(s) | 4318 |
| ApaLI | GTGCAC | 2 cut(s) | 2017, 2610 |
| ApoI | RAATTY | 9 cut(s) | 603, 905, 994, 1168, 1309, 1654, 1750, 3043, 3889 |
| Asp700I | GAANNNNTTC | 3 cut(s) | 437, 2081, 4594 |
| AspA2I | CCTAGG | 1 cut(s) | 4288 |
| AspLEI | GCGC | 4 cut(s) | 1921, 2955, 4319, 4551 |
| AsuC2I | CCSGG | 4 cut(s) | 1890, 2325, 2326, 3519 |
| AsuII | TTCGAA | 2 cut(s) | 882, 1145 |
| AvaI | CYCGRG | 1 cut(s) | 2324 |
| AvaII | GGWCC | 8 cut(s) | 107, 154, 357, 697, 722, 2351, 2630, 3371 |
| AvrII | CCTAGG | 1 cut(s) | 4288 |
| BaeGI | GKGCMC | 5 cut(s) | 531, 2021, 2614, 3465, 4242 |
| BalI | TGGCCA | 1 cut(s) | 4191 |
| BanI | GGYRCC | 3 cut(s) | 526, 1918, 3224 |
| BanII | GRGCYC | 2 cut(s) | 1955, 3167 |
| BauI | CACGAG | 1 cut(s) | 3015 |
| BbsI | GAAGAC | 6 cut(s) | 270, 330, 1074, 1784, 2415, 2988 |
| Bbv12I | GWGCWC | 4 cut(s) | 1955, 2021, 2307, 2614 |
| BbvCI | CCTCAGC | 2 cut(s) | 969, 3560 |
| BceAI | ACGGC | 7 cut(s) | 74, 414, 504, 780, 1134, 1286, 3314 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 352, 386, 2085, 2119 |
| BciT130I | CCWGG | 9 cut(s) | 614, 1185, 1929, 2178, 2409, 3240, 3481, 4153, 4779 |
| BciVI | GTATCC | 1 cut(s) | 1948 |
| BclI | TGATCA | 2 cut(s) | 1135, 3775 |
| BcnI | CCSGG | 4 cut(s) | 1890, 2325, 2326, 3519 |
| BfaI | CTAG | 7 cut(s) | 579, 2334, 3126, 3297, 4131, 4289, 4320 |
| BfmI | CTRYAG | 6 cut(s) | 1191, 1760, 2499, 2924, 3275, 4677 |
| BfoI | RGCGCY | 3 cut(s) | 1922, 4320, 4552 |
| BfuAI | ACCTGC | 1 cut(s) | 2949 |
| BfuI | GTATCC | 1 cut(s) | 1948 |
| BglI | GCCNNNNNGGC | 2 cut(s) | 838, 1894 |
| BglII | AGATCT | 1 cut(s) | 1495 |
| BlnI | CCTAGG | 1 cut(s) | 4288 |
| BlpI | GCTNAGC | 2 cut(s) | 1269, 1821 |
| BmcAI | AGTACT | 1 cut(s) | 4324 |
| Bme18I | GGWCC | 8 cut(s) | 107, 154, 357, 697, 722, 2351, 2630, 3371 |
| BmeRI | GACNNNNNGTC | 1 cut(s) | 2989 |
| BmeT110I | CYCGRG | 1 cut(s) | 2324 |
| BmrI | ACTGGG | 2 cut(s) | 2545, 4236 |
| BmuI | ACTGGG | 2 cut(s) | 2545, 4236 |
| BoxI | GACNNNNGTC | 2 cut(s) | 105, 2410 |
| BpiI | GAAGAC | 6 cut(s) | 270, 330, 1074, 1784, 2415, 2988 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1145, 1177 |
| BpmI | CTGGAG | 7 cut(s) | 1494, 2139, 2291, 2490, 3463, 3711, 4800 |
| Bpu10I | CCTNAGC | 5 cut(s) | 969, 1551, 2640, 3560, 4557 |
| Bpu1102I | GCTNAGC | 2 cut(s) | 1269, 1821 |
| Bpu14I | TTCGAA | 2 cut(s) | 882, 1145 |
| BpuEI | CTTGAG | 5 cut(s) | 1218, 2053, 2981, 4029, 4464 |
| BpuMI | CCSGG | 4 cut(s) | 1890, 2325, 2326, 3519 |
| Bsa29I | ATCGAT | 2 cut(s) | 3257, 4436 |
| BsaBI | GATNNNNATC | 3 cut(s) | 165, 171, 201 |
| BsaHI | GRCGYC | 6 cut(s) | 623, 656, 767, 918, 977, 1919 |
| BsaI | GGTCTC | 2 cut(s) | 177, 591 |
| BsaWI | WCCGGW | 5 cut(s) | 109, 429, 699, 3373, 3389 |
| Bse118I | RCCGGY | 4 cut(s) | 658, 2089, 4831, 4856 |
| Bse1I | ACTGG | 8 cut(s) | 446, 2451, 2551, 3108, 3585, 3861, 4062, 4242 |
| Bse3DI | GCAATG | 4 cut(s) | 2034, 2176, 2652, 3057 |
| Bse8I | GATNNNNATC | 3 cut(s) | 165, 171, 201 |
| BseAI | TCCGGA | 2 cut(s) | 699, 3373 |
| BseBI | CCWGG | 9 cut(s) | 614, 1185, 1929, 2178, 2409, 3240, 3481, 4153, 4779 |
| BseCI | ATCGAT | 2 cut(s) | 3257, 4436 |
| BseJI | GATNNNNATC | 3 cut(s) | 165, 171, 201 |
| BseMI | GCAATG | 4 cut(s) | 2034, 2176, 2652, 3057 |
| BseNI | ACTGG | 8 cut(s) | 446, 2451, 2551, 3108, 3585, 3861, 4062, 4242 |
| BseRI | GAGGAG | 6 cut(s) | 302, 1497, 2136, 3408, 3867, 4074 |
| BseSI | GKGCMC | 5 cut(s) | 531, 2021, 2614, 3465, 4242 |
| BseX3I | CGGCCG | 2 cut(s) | 635, 734 |
| BseYI | CCCAGC | 3 cut(s) | 3173, 3437, 3633 |
| BsgI | GTGCAG | 6 cut(s) | 1664, 2181, 2306, 2460, 3330, 4731 |
| Bsh1236I | CGCG | 5 cut(s) | 195, 273, 803, 1051, 2953 |
| Bsh1285I | CGRYCG | 5 cut(s) | 638, 737, 1563, 3581, 4815 |
| BshNI | GGYRCC | 3 cut(s) | 526, 1918, 3224 |
| BshVI | ATCGAT | 2 cut(s) | 3257, 4436 |
| BsiEI | CGRYCG | 5 cut(s) | 638, 737, 1563, 3581, 4815 |
| BsiHKAI | GWGCWC | 4 cut(s) | 1955, 2021, 2307, 2614 |
| BsiHKCI | CYCGRG | 1 cut(s) | 2324 |
| BsiWI | CGTACG | 1 cut(s) | 1215 |
| BslFI | GGGAC | 5 cut(s) | 610, 1089, 2791, 3937, 4262 |
| BsmBI | CGTCTC | 2 cut(s) | 2700, 4260 |
| BsmFI | GGGAC | 5 cut(s) | 610, 1089, 2791, 3937, 4262 |
| BsmI | GAATGC | 1 cut(s) | 4633 |
| Bso31I | GGTCTC | 2 cut(s) | 177, 591 |
| BsoBI | CYCGRG | 1 cut(s) | 2324 |
| Bsp119I | TTCGAA | 2 cut(s) | 882, 1145 |
| Bsp1286I | GDGCHC | 8 cut(s) | 531, 1955, 2021, 2307, 2614, 3167, 3465, 4242 |
| Bsp13I | TCCGGA | 2 cut(s) | 699, 3373 |
| Bsp1407I | TGTACA | 1 cut(s) | 4795 |
| Bsp1720I | GCTNAGC | 2 cut(s) | 1269, 1821 |
| Bsp19I | CCATGG | 2 cut(s) | 1941, 3432 |
| Bsp68I | TCGCGA | 1 cut(s) | 195 |
| BspDI | ATCGAT | 2 cut(s) | 3257, 4436 |
| BspEI | TCCGGA | 2 cut(s) | 699, 3373 |
| BspFNI | CGCG | 5 cut(s) | 195, 273, 803, 1051, 2953 |
| BspMAI | CTGCAG | 4 cut(s) | 1195, 1764, 2928, 4681 |
| BspMI | ACCTGC | 1 cut(s) | 2949 |
| BspPI | GGATC | 6 cut(s) | 180, 210, 1195, 1541, 2116, 4649 |
| BspT104I | TTCGAA | 2 cut(s) | 882, 1145 |
| BspT107I | GGYRCC | 3 cut(s) | 526, 1918, 3224 |
| BspTNI | GGTCTC | 2 cut(s) | 177, 591 |
| BsrBI | CCGCTC | 2 cut(s) | 484, 2396 |
| BsrDI | GCAATG | 4 cut(s) | 2034, 2176, 2652, 3057 |
| BsrFI | RCCGGY | 4 cut(s) | 658, 2089, 4831, 4856 |
| BsrGI | TGTACA | 1 cut(s) | 4795 |
| BsrI | ACTGG | 8 cut(s) | 446, 2451, 2551, 3108, 3585, 3861, 4062, 4242 |
| BssAI | RCCGGY | 4 cut(s) | 658, 2089, 4831, 4856 |
| BssNI | GRCGYC | 6 cut(s) | 623, 656, 767, 918, 977, 1919 |
| BssSI | CACGAG | 1 cut(s) | 3015 |
| BssT1I | CCWWGG | 4 cut(s) | 1941, 3432, 4026, 4288 |
| Bst2BI | CACGAG | 1 cut(s) | 3015 |
| Bst2UI | CCWGG | 9 cut(s) | 614, 1185, 1929, 2178, 2409, 3240, 3481, 4153, 4779 |
| Bst4CI | ACNGT | 9 cut(s) | 543, 1103, 1843, 3232, 3305, 3927, 4422, 4752, 4816 |
| Bst6I | CTCTTC | 8 cut(s) | 428, 551, 698, 818, 3411, 3799, 3952, 4315 |
| BstACI | GRCGYC | 6 cut(s) | 623, 656, 767, 918, 977, 1919 |
| BstAPI | GCANNNNNTGC | 5 cut(s) | 2302, 2495, 2941, 3643, 3655 |
| BstAUI | TGTACA | 1 cut(s) | 4795 |
| BstBI | TTCGAA | 2 cut(s) | 882, 1145 |
| BstDSI | CCRYGG | 4 cut(s) | 1941, 3330, 3432, 4815 |
| BstEII | GGTNACC | 2 cut(s) | 499, 2768 |
| BstFNI | CGCG | 5 cut(s) | 195, 273, 803, 1051, 2953 |
| BstH2I | RGCGCY | 3 cut(s) | 1922, 4320, 4552 |
| BstHHI | GCGC | 4 cut(s) | 1921, 2955, 4319, 4551 |
| BstMCI | CGRYCG | 5 cut(s) | 638, 737, 1563, 3581, 4815 |
| BstNI | CCWGG | 9 cut(s) | 614, 1185, 1929, 2178, 2409, 3240, 3481, 4153, 4779 |
| BstNSI | RCATGY | 3 cut(s) | 2948, 4474, 4802 |
| BstPAI | GACNNNNGTC | 2 cut(s) | 105, 2410 |
| BstPI | GGTNACC | 2 cut(s) | 499, 2768 |
| BstSFI | CTRYAG | 6 cut(s) | 1191, 1760, 2499, 2924, 3275, 4677 |
| BstSLI | GKGCMC | 5 cut(s) | 531, 2021, 2614, 3465, 4242 |
| BstUI | CGCG | 5 cut(s) | 195, 273, 803, 1051, 2953 |
| BstV2I | GAAGAC | 6 cut(s) | 270, 330, 1074, 1784, 2415, 2988 |
| BstX2I | RGATCY | 4 cut(s) | 1187, 1495, 1546, 2108 |
| BstXI | CCANNNNNNTGG | 2 cut(s) | 1129, 1405 |
| BstYI | RGATCY | 4 cut(s) | 1187, 1495, 1546, 2108 |
| BstZI | CGGCCG | 2 cut(s) | 635, 734 |
| Bsu15I | ATCGAT | 2 cut(s) | 3257, 4436 |
| BsuI | GTATCC | 1 cut(s) | 1948 |
| BsuTUI | ATCGAT | 2 cut(s) | 3257, 4436 |
| BtgI | CCRYGG | 4 cut(s) | 1941, 3330, 3432, 4815 |
| BtgZI | GCGATG | 1 cut(s) | 288 |
| BtsI | GCAGTG | 4 cut(s) | 1392, 2735, 2872, 3769 |
| BtuMI | TCGCGA | 1 cut(s) | 195 |
| BveI | ACCTGC | 1 cut(s) | 2949 |
| CaiI | CAGNNNCTG | 3 cut(s) | 1190, 2941, 3605 |
| CfoI | GCGC | 4 cut(s) | 1921, 2955, 4319, 4551 |
| Cfr10I | RCCGGY | 4 cut(s) | 658, 2089, 4831, 4856 |
| Cfr9I | CCCGGG | 1 cut(s) | 2324 |
| ClaI | ATCGAT | 2 cut(s) | 3257, 4436 |
| CpoI | CGGWCCG | 1 cut(s) | 697 |
| CseI | GACGC | 4 cut(s) | 537, 664, 756, 926 |
| Csp6I | GTAC | 8 cut(s) | 814, 1216, 1859, 2032, 3769, 4323, 4775, 4796 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 2256, 2291 |
| CspI | CGGWCCG | 1 cut(s) | 697 |
| CviQI | GTAC | 8 cut(s) | 814, 1216, 1859, 2032, 3769, 4323, 4775, 4796 |
| DinI | GGCGCC | 1 cut(s) | 1920 |
| DraI | TTTAAA | 1 cut(s) | 1653 |
| DrdI | GACNNNNNNGTC | 2 cut(s) | 559, 769 |
| DriI | GACNNNNNGTC | 1 cut(s) | 2989 |
| DseDI | GACNNNNNNGTC | 2 cut(s) | 559, 769 |
| EaeI | YGGCCR | 7 cut(s) | 635, 734, 1119, 1886, 2006, 2087, 4189 |
| EagI | CGGCCG | 2 cut(s) | 635, 734 |
| Eam1104I | CTCTTC | 8 cut(s) | 428, 551, 698, 818, 3411, 3799, 3952, 4315 |
| Eam1105I | GACNNNNNGTC | 1 cut(s) | 2989 |
| EarI | CTCTTC | 8 cut(s) | 428, 551, 698, 818, 3411, 3799, 3952, 4315 |
| EciI | GGCGGA | 6 cut(s) | 76, 241, 366, 1012, 3054, 3997 |
| Ecl136II | GAGCTC | 1 cut(s) | 1953 |
| EclXI | CGGCCG | 2 cut(s) | 635, 734 |
| Eco130I | CCWWGG | 4 cut(s) | 1941, 3432, 4026, 4288 |
| Eco24I | GRGCYC | 2 cut(s) | 1955, 3167 |
| Eco31I | GGTCTC | 2 cut(s) | 177, 591 |
| Eco47I | GGWCC | 8 cut(s) | 107, 154, 357, 697, 722, 2351, 2630, 3371 |
| Eco47III | AGCGCT | 1 cut(s) | 4318 |
| Eco52I | CGGCCG | 2 cut(s) | 635, 734 |
| Eco53kI | GAGCTC | 1 cut(s) | 1953 |
| Eco57I | CTGAAG | 3 cut(s) | 731, 1947, 3683 |
| Eco88I | CYCGRG | 1 cut(s) | 2324 |
| Eco91I | GGTNACC | 2 cut(s) | 499, 2768 |
| EcoICRI | GAGCTC | 1 cut(s) | 1953 |
| EcoO109I | RGGNCCY | 2 cut(s) | 357, 2630 |
| EcoO65I | GGTNACC | 2 cut(s) | 499, 2768 |
| EcoRI | GAATTC | 2 cut(s) | 994, 3889 |
| EcoRII | CCWGG | 9 cut(s) | 612, 1183, 1927, 2176, 2407, 3238, 3479, 4151, 4777 |
| EcoT14I | CCWWGG | 4 cut(s) | 1941, 3432, 4026, 4288 |
| EcoT22I | ATGCAT | 3 cut(s) | 2581, 3063, 4731 |
| EcoT38I | GRGCYC | 2 cut(s) | 1955, 3167 |
| EgeI | GGCGCC | 1 cut(s) | 1920 |
| EheI | GGCGCC | 1 cut(s) | 1920 |
| ErhI | CCWWGG | 4 cut(s) | 1941, 3432, 4026, 4288 |
| Esp3I | CGTCTC | 2 cut(s) | 2700, 4260 |
| FalI | AAGNNNNNCTT | 6 cut(s) | 734, 766, 1353, 1385, 2782, 2814 |
| FaqI | GGGAC | 5 cut(s) | 610, 1089, 2791, 3937, 4262 |
| FauI | CCCGC | 5 cut(s) | 1873, 1886, 4259, 4520, 4861 |
| FbaI | TGATCA | 2 cut(s) | 1135, 3775 |
| FblI | GTMKAC | 4 cut(s) | 551, 653, 755, 1115 |
| FriOI | GRGCYC | 2 cut(s) | 1955, 3167 |
| FspBI | CTAG | 7 cut(s) | 579, 2334, 3126, 3297, 4131, 4289, 4320 |
| GlaI | GCGC | 4 cut(s) | 1920, 2954, 4318, 4550 |
| GsaI | CCCAGC | 3 cut(s) | 3177, 3441, 3637 |
| GsuI | CTGGAG | 7 cut(s) | 1494, 2139, 2291, 2490, 3463, 3711, 4800 |
| HaeII | RGCGCY | 3 cut(s) | 1922, 4320, 4552 |
| HgaI | GACGC | 4 cut(s) | 537, 664, 756, 926 |
| HhaI | GCGC | 4 cut(s) | 1921, 2955, 4319, 4551 |
| Hin1I | GRCGYC | 6 cut(s) | 623, 656, 767, 918, 977, 1919 |
| Hin6I | GCGC | 4 cut(s) | 1919, 2953, 4317, 4549 |
| HinP1I | GCGC | 4 cut(s) | 1919, 2953, 4317, 4549 |
| HincII | GTYRAC | 8 cut(s) | 396, 552, 654, 756, 2762, 2994, 3556, 3942 |
| HindII | GTYRAC | 8 cut(s) | 396, 552, 654, 756, 2762, 2994, 3556, 3942 |
| HindIII | AAGCTT | 3 cut(s) | 2872, 3192, 4482 |
| HpaI | GTTAAC | 1 cut(s) | 3556 |
| HpyCH4III | ACNGT | 9 cut(s) | 543, 1103, 1843, 3232, 3305, 3927, 4422, 4752, 4816 |
| HpyCH4IV | ACGT | 4 cut(s) | 623, 977, 1417, 4118 |
| HpySE526I | ACGT | 4 cut(s) | 623, 977, 1417, 4118 |
| Hsp92I | GRCGYC | 6 cut(s) | 623, 656, 767, 918, 977, 1919 |
| HspAI | GCGC | 4 cut(s) | 1919, 2953, 4317, 4549 |
| KasI | GGCGCC | 1 cut(s) | 1918 |
| Kpn2I | TCCGGA | 2 cut(s) | 699, 3373 |
| KroI | GCCGGC | 1 cut(s) | 658 |
| KroNI | GCCGGC | 1 cut(s) | 660 |
| Ksp22I | TGATCA | 2 cut(s) | 1135, 3775 |
| KspAI | GTTAAC | 1 cut(s) | 3556 |
| MaeI | CTAG | 7 cut(s) | 579, 2334, 3126, 3297, 4131, 4289, 4320 |
| MaeII | ACGT | 4 cut(s) | 623, 977, 1417, 4118 |
| MbiI | CCGCTC | 2 cut(s) | 484, 2396 |
| MfeI | CAATTG | 1 cut(s) | 4334 |
| MflI | RGATCY | 4 cut(s) | 1187, 1495, 1546, 2108 |
| MhlI | GDGCHC | 8 cut(s) | 531, 1955, 2021, 2307, 2614, 3167, 3465, 4242 |
| MlsI | TGGCCA | 1 cut(s) | 4191 |
| MluNI | TGGCCA | 1 cut(s) | 4191 |
| Mly113I | GGCGCC | 1 cut(s) | 1919 |
| MlyI | GAGTC | 4 cut(s) | 83, 351, 1223, 4714 |
| MmeI | TCCRAC | 5 cut(s) | 574, 689, 2428, 3079, 4835 |
| Mox20I | TGGCCA | 1 cut(s) | 4191 |
| Mph1103I | ATGCAT | 3 cut(s) | 2581, 3063, 4731 |
| MroI | TCCGGA | 2 cut(s) | 699, 3373 |
| MroNI | GCCGGC | 1 cut(s) | 658 |
| MroXI | GAANNNNTTC | 3 cut(s) | 437, 2081, 4594 |
| MscI | TGGCCA | 1 cut(s) | 4191 |
| MslI | CAYNNNNRTG | 3 cut(s) | 1016, 2607, 2847 |
| Msp20I | TGGCCA | 1 cut(s) | 4191 |
| MunI | CAATTG | 1 cut(s) | 4334 |
| Mva1269I | GAATGC | 1 cut(s) | 4633 |
| MvaI | CCWGG | 9 cut(s) | 614, 1185, 1929, 2178, 2409, 3240, 3481, 4153, 4779 |
| MvnI | CGCG | 5 cut(s) | 195, 273, 803, 1051, 2953 |
| NaeI | GCCGGC | 1 cut(s) | 660 |
| NarI | GGCGCC | 1 cut(s) | 1919 |
| NciI | CCSGG | 4 cut(s) | 1890, 2325, 2326, 3519 |
| NcoI | CCATGG | 2 cut(s) | 1941, 3432 |
| NgoMIV | GCCGGC | 1 cut(s) | 658 |
| NmeAIII | GCCGAG | 3 cut(s) | 663, 671, 1984 |
| NmuCI | GTSAC | 6 cut(s) | 54, 499, 1009, 2768, 4572, 4611 |
| NruI | TCGCGA | 1 cut(s) | 195 |
| NsiI | ATGCAT | 3 cut(s) | 2581, 3063, 4731 |
| NspI | RCATGY | 3 cut(s) | 2948, 4474, 4802 |
| NspV | TTCGAA | 2 cut(s) | 882, 1145 |
| PcsI | WCGNNNNNNNCGW | 5 cut(s) | 662, 932, 944, 1224, 3013 |
| PctI | GAATGC | 1 cut(s) | 4633 |
| PdiI | GCCGGC | 1 cut(s) | 660 |
| PdmI | GAANNNNTTC | 3 cut(s) | 437, 2081, 4594 |
| Pfl23II | CGTACG | 1 cut(s) | 1215 |
| PflFI | GACNNNGTC | 1 cut(s) | 766 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2557 |
| Ple19I | CGATCG | 1 cut(s) | 3581 |
| PleI | GAGTC | 4 cut(s) | 83, 350, 1223, 4714 |
| PluTI | GGCGCC | 1 cut(s) | 1922 |
| PpsI | GAGTC | 4 cut(s) | 83, 350, 1223, 4714 |
| PpuMI | RGGWCCY | 2 cut(s) | 357, 2630 |
| PshAI | GACNNNNGTC | 2 cut(s) | 105, 2410 |
| Psp124BI | GAGCTC | 1 cut(s) | 1955 |
| Psp5II | RGGWCCY | 2 cut(s) | 357, 2630 |
| Psp6I | CCWGG | 9 cut(s) | 612, 1183, 1927, 2176, 2407, 3238, 3479, 4151, 4777 |
| PspEI | GGTNACC | 2 cut(s) | 499, 2768 |
| PspFI | CCCAGC | 3 cut(s) | 3173, 3437, 3633 |
| PspGI | CCWGG | 9 cut(s) | 612, 1183, 1927, 2176, 2407, 3238, 3479, 4151, 4777 |
| PspLI | CGTACG | 1 cut(s) | 1215 |
| PspPPI | RGGWCCY | 2 cut(s) | 357, 2630 |
| PstI | CTGCAG | 4 cut(s) | 1195, 1764, 2928, 4681 |
| PstNI | CAGNNNCTG | 3 cut(s) | 1190, 2941, 3605 |
| PsuI | RGATCY | 4 cut(s) | 1187, 1495, 1546, 2108 |
| PsyI | GACNNNGTC | 1 cut(s) | 766 |
| PvuI | CGATCG | 1 cut(s) | 3581 |
| RruI | TCGCGA | 1 cut(s) | 195 |
| RsaI | GTAC | 8 cut(s) | 815, 1217, 1860, 2033, 3770, 4324, 4776, 4797 |
| RsaNI | GTAC | 8 cut(s) | 814, 1216, 1859, 2032, 3769, 4323, 4775, 4796 |
| RseI | CAYNNNNRTG | 3 cut(s) | 1016, 2607, 2847 |
| Rsr2I | CGGWCCG | 1 cut(s) | 697 |
| RsrII | CGGWCCG | 1 cut(s) | 697 |
| SacI | GAGCTC | 1 cut(s) | 1955 |
| SalI | GTCGAC | 3 cut(s) | 550, 652, 754 |
| ScaI | AGTACT | 1 cut(s) | 4324 |
| SchI | GAGTC | 4 cut(s) | 83, 351, 1223, 4714 |
| SduI | GDGCHC | 8 cut(s) | 531, 1955, 2021, 2307, 2614, 3167, 3465, 4242 |
| SfcI | CTRYAG | 6 cut(s) | 1191, 1760, 2499, 2924, 3275, 4677 |
| SfoI | GGCGCC | 1 cut(s) | 1920 |
| SfuI | TTCGAA | 2 cut(s) | 882, 1145 |
| SgrAI | CRCCGGYG | 1 cut(s) | 4856 |
| SgrDI | CGTCGACG | 2 cut(s) | 550, 652 |
| SinI | GGWCC | 8 cut(s) | 107, 154, 357, 697, 722, 2351, 2630, 3371 |
| SmaI | CCCGGG | 1 cut(s) | 2326 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 1016, 2607, 2847 |
| SmlI | CTYRAG | 5 cut(s) | 1233, 2068, 2960, 4044, 4479 |
| SmoI | CTYRAG | 5 cut(s) | 1233, 2068, 2960, 4044, 4479 |
| SspDI | GGCGCC | 1 cut(s) | 1918 |
| SspMI | CTAG | 7 cut(s) | 579, 2334, 3126, 3297, 4131, 4289, 4320 |
| SstI | GAGCTC | 1 cut(s) | 1955 |
| StyI | CCWWGG | 4 cut(s) | 1941, 3432, 4026, 4288 |
| TaaI | ACNGT | 9 cut(s) | 543, 1103, 1843, 3232, 3305, 3927, 4422, 4752, 4816 |
| TaiI | ACGT | 4 cut(s) | 626, 980, 1420, 4121 |
| TaqII | GACCGA | 3 cut(s) | 171, 201, 3509 |
| TatI | WGTACW | 3 cut(s) | 3768, 4322, 4795 |
| TseFI | GTSAC | 6 cut(s) | 54, 499, 1009, 2768, 4572, 4611 |
| Tsp45I | GTSAC | 6 cut(s) | 54, 499, 1009, 2768, 4572, 4611 |
| TspGWI | ACGGA | 8 cut(s) | 264, 342, 735, 1531, 1592, 1717, 1945, 2682 |
| TspMI | CCCGGG | 1 cut(s) | 2324 |
| Tth111I | GACNNNGTC | 1 cut(s) | 766 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2557 |
| VneI | GTGCAC | 2 cut(s) | 2017, 2610 |
| VpaK11BI | GGWCC | 8 cut(s) | 107, 154, 357, 697, 722, 2351, 2630, 3371 |
| XapI | RAATTY | 9 cut(s) | 603, 905, 994, 1168, 1309, 1654, 1750, 3043, 3889 |
| XbaI | TCTAGA | 1 cut(s) | 4130 |
| XceI | RCATGY | 3 cut(s) | 2948, 4474, 4802 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 4775 |
| XmaI | CCCGGG | 1 cut(s) | 2324 |
| XmaJI | CCTAGG | 1 cut(s) | 4288 |
| XmiI | GTMKAC | 4 cut(s) | 551, 653, 755, 1115 |
| XmnI | GAANNNNTTC | 3 cut(s) | 437, 2081, 4594 |
| XspI | CTAG | 7 cut(s) | 579, 2334, 3126, 3297, 4131, 4289, 4320 |
| ZraI | GACGTC | 2 cut(s) | 624, 978 |
| ZrmI | AGTACT | 1 cut(s) | 4324 |
| Zsp2I | ATGCAT | 3 cut(s) | 2581, 3063, 4731 |