Protein TIME FOR
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G22380 AT3G22380 AT3G22380 |
| fragaria_vesca | FvH4_4g15230 FvH4_4g15230 |
| malus_domestica | MD13G1190800.v1.1 MD16G1127600.v1.1 MD16G1191200.v1.1 |
| prunus_persica | Prupe.1G011200_v2.0.a1 Prupe.1G011200_v2.0.a1 |
| pyrus_communis | pycom07g23630 pycom13g16390 pycom16g16090 |
| rosa_chinensis | RchiOBHm_Chr4g0416621 |
| rosa_laevigata | RLG00000007965 |
| rosa_multiflora | Rmu_co8150674.1_g000001 Rmu_sc0003722.1_g000056 |
| rosa_roxburghii | Rroxscaffold_5G00360500 |
| rosa_rugosa | Rorug04G0143400 Rorug04G0143500 |
| rosa_samantha | Rh4AG205900 Rh4BG203300 Rh4CG216700 Rh4DG202800 |
| rosa_wichuraiana | Rw4G017420 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 2404, 4105 |
| AatII | GACGTC | 3 cut(s) | 20, 302, 4502 |
| Acc36I | ACCTGC | 2 cut(s) | 2404, 4105 |
| AccB1I | GGYRCC | 3 cut(s) | 1871, 4135, 4556 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 4163 |
| AccBSI | CCGCTC | 1 cut(s) | 42 |
| AccI | GTMKAC | 1 cut(s) | 1010 |
| AccII | CGCG | 3 cut(s) | 75, 943, 3880 |
| AclWI | GGATC | 9 cut(s) | 60, 72, 120, 1090, 1457, 1470, 2035, 4495, 4559 |
| AcoI | YGGCCR | 6 cut(s) | 530, 1023, 1119, 1805, 1925, 2006 |
| AcuI | CTGAAG | 4 cut(s) | 2579, 3291, 3578, 3584 |
| AcyI | GRCGYC | 3 cut(s) | 17, 299, 4499 |
| AflIII | ACRYGT | 1 cut(s) | 2494 |
| AjiI | CACGTC | 1 cut(s) | 540 |
| AjnI | CCWGG | 8 cut(s) | 1078, 2092, 2155, 2236, 2311, 2428, 3794, 3810 |
| Alw21I | GWGCWC | 2 cut(s) | 1772, 2506 |
| Alw26I | GTCTC | 9 cut(s) | 8, 63, 75, 462, 486, 525, 1204, 1357, 2331 |
| Alw44I | GTGCAC | 1 cut(s) | 2502 |
| AlwI | GGATC | 9 cut(s) | 60, 72, 120, 1090, 1457, 1470, 2035, 4495, 4559 |
| AlwNI | CAGNNNCTG | 4 cut(s) | 1085, 2030, 2449, 4583 |
| ApaLI | GTGCAC | 1 cut(s) | 2502 |
| ArsI | GACNNNNNNTTYG | 6 cut(s) | 2753, 2785, 2920, 2952, 4045, 4077 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 2000 |
| AspA2I | CCTAGG | 1 cut(s) | 4186 |
| AspLEI | GCGC | 5 cut(s) | 556, 856, 2243, 3427, 3721 |
| AsuC2I | CCSGG | 9 cut(s) | 62, 86, 92, 110, 1215, 1373, 1809, 3399, 4087 |
| AsuII | TTCGAA | 2 cut(s) | 1208, 4064 |
| AvaII | GGWCC | 9 cut(s) | 58, 88, 94, 106, 526, 623, 737, 2522, 4729 |
| AvrII | CCTAGG | 1 cut(s) | 4186 |
| BaeGI | GKGCMC | 3 cut(s) | 1874, 2506, 4140 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 2429, 2462 |
| BalI | TGGCCA | 3 cut(s) | 1025, 1121, 2008 |
| BamHI | GGATCC | 1 cut(s) | 1462 |
| BanI | GGYRCC | 3 cut(s) | 1871, 4135, 4556 |
| BanII | GRGCYC | 2 cut(s) | 949, 1772 |
| BbsI | GAAGAC | 5 cut(s) | 180, 309, 1676, 2763, 4494 |
| Bbv12I | GWGCWC | 2 cut(s) | 1772, 2506 |
| BbvCI | CCTCAGC | 1 cut(s) | 702 |
| BceAI | ACGGC | 2 cut(s) | 652, 4463 |
| BciT130I | CCWGG | 8 cut(s) | 1080, 2094, 2157, 2238, 2313, 2430, 3796, 3812 |
| BciVI | GTATCC | 2 cut(s) | 1823, 3475 |
| BclI | TGATCA | 1 cut(s) | 3673 |
| BcnI | CCSGG | 9 cut(s) | 62, 86, 92, 110, 1215, 1373, 1809, 3399, 4087 |
| BcoDI | GTCTC | 9 cut(s) | 8, 63, 75, 462, 486, 525, 1204, 1357, 2331 |
| BfmI | CTRYAG | 6 cut(s) | 2385, 2783, 2789, 3950, 4587, 4692 |
| BfuAI | ACCTGC | 2 cut(s) | 2404, 4105 |
| BfuI | GTATCC | 2 cut(s) | 1823, 3475 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1813 |
| BglII | AGATCT | 2 cut(s) | 1393, 1418 |
| BlnI | CCTAGG | 1 cut(s) | 4186 |
| Bme18I | GGWCC | 9 cut(s) | 58, 88, 94, 106, 526, 623, 737, 2522, 4729 |
| BmgBI | CACGTC | 1 cut(s) | 540 |
| BmrI | ACTGGG | 4 cut(s) | 980, 4134, 4227, 4642 |
| BmuI | ACTGGG | 4 cut(s) | 980, 4134, 4227, 4642 |
| BoxI | GACNNNNGTC | 1 cut(s) | 2314 |
| BpiI | GAAGAC | 5 cut(s) | 180, 309, 1676, 2763, 4494 |
| BplI | GAGNNNNNCTC | 4 cut(s) | 331, 363, 1040, 1072 |
| BpmI | CTGGAG | 5 cut(s) | 1410, 1637, 1866, 2220, 4140 |
| Bpu10I | CCTNAGC | 1 cut(s) | 702 |
| Bpu14I | TTCGAA | 2 cut(s) | 1208, 4064 |
| BpuEI | CTTGAG | 4 cut(s) | 660, 1229, 2305, 3069 |
| BpuMI | CCSGG | 9 cut(s) | 62, 86, 92, 110, 1215, 1373, 1809, 3399, 4087 |
| Bsa29I | ATCGAT | 2 cut(s) | 545, 977 |
| BsaBI | GATNNNNATC | 2 cut(s) | 695, 1308 |
| BsaHI | GRCGYC | 3 cut(s) | 17, 299, 4499 |
| BsaI | GGTCTC | 4 cut(s) | 63, 75, 462, 486 |
| BsaWI | WCCGGW | 2 cut(s) | 349, 523 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 1864, 1894, 3134, 3164 |
| Bse118I | RCCGGY | 2 cut(s) | 382, 504 |
| Bse3DI | GCAATG | 6 cut(s) | 1696, 1953, 2970, 3360, 3661, 4198 |
| Bse8I | GATNNNNATC | 2 cut(s) | 695, 1308 |
| BseBI | CCWGG | 8 cut(s) | 1080, 2094, 2157, 2238, 2313, 2430, 3796, 3812 |
| BseCI | ATCGAT | 2 cut(s) | 545, 977 |
| BseJI | GATNNNNATC | 2 cut(s) | 695, 1308 |
| BseMI | GCAATG | 6 cut(s) | 1696, 1953, 2970, 3360, 3661, 4198 |
| BseSI | GKGCMC | 3 cut(s) | 1874, 2506, 4140 |
| BseYI | CCCAGC | 3 cut(s) | 1152, 1719, 3068 |
| BsgI | GTGCAG | 5 cut(s) | 906, 2097, 2133, 2364, 4510 |
| Bsh1236I | CGCG | 3 cut(s) | 75, 943, 3880 |
| BshNI | GGYRCC | 3 cut(s) | 1871, 4135, 4556 |
| BshVI | ATCGAT | 2 cut(s) | 545, 977 |
| BsiHKAI | GWGCWC | 2 cut(s) | 1772, 2506 |
| BslFI | GGGAC | 7 cut(s) | 71, 101, 107, 119, 3958, 4234, 4510 |
| BsmAI | GTCTC | 9 cut(s) | 8, 63, 75, 462, 486, 525, 1204, 1357, 2331 |
| BsmBI | CGTCTC | 3 cut(s) | 8, 525, 1357 |
| BsmFI | GGGAC | 7 cut(s) | 71, 101, 107, 119, 3958, 4234, 4510 |
| BsmI | GAATGC | 1 cut(s) | 4387 |
| Bso31I | GGTCTC | 4 cut(s) | 63, 75, 462, 486 |
| Bsp119I | TTCGAA | 2 cut(s) | 1208, 4064 |
| Bsp1286I | GDGCHC | 5 cut(s) | 949, 1772, 1874, 2506, 4140 |
| Bsp19I | CCATGG | 1 cut(s) | 1860 |
| BspDI | ATCGAT | 2 cut(s) | 545, 977 |
| BspFNI | CGCG | 3 cut(s) | 75, 943, 3880 |
| BspHI | TCATGA | 1 cut(s) | 460 |
| BspMAI | CTGCAG | 3 cut(s) | 2389, 2793, 4591 |
| BspMI | ACCTGC | 2 cut(s) | 2404, 4105 |
| BspPI | GGATC | 9 cut(s) | 60, 72, 120, 1090, 1457, 1470, 2035, 4495, 4559 |
| BspQI | GCTCTTC | 1 cut(s) | 1542 |
| BspT104I | TTCGAA | 2 cut(s) | 1208, 4064 |
| BspT107I | GGYRCC | 3 cut(s) | 1871, 4135, 4556 |
| BspTNI | GGTCTC | 4 cut(s) | 63, 75, 462, 486 |
| BsrBI | CCGCTC | 1 cut(s) | 42 |
| BsrDI | GCAATG | 6 cut(s) | 1696, 1953, 2970, 3360, 3661, 4198 |
| BsrFI | RCCGGY | 2 cut(s) | 382, 504 |
| BssAI | RCCGGY | 2 cut(s) | 382, 504 |
| BssNI | GRCGYC | 3 cut(s) | 17, 299, 4499 |
| BssT1I | CCWWGG | 3 cut(s) | 1860, 4049, 4186 |
| Bst2UI | CCWGG | 8 cut(s) | 1080, 2094, 2157, 2238, 2313, 2430, 3796, 3812 |
| BstACI | GRCGYC | 3 cut(s) | 17, 299, 4499 |
| BstAPI | GCANNNNNTGC | 7 cut(s) | 2111, 2396, 3026, 3529, 4291, 4471, 4583 |
| BstBI | TTCGAA | 2 cut(s) | 1208, 4064 |
| BstDSI | CCRYGG | 1 cut(s) | 1860 |
| BstEII | GGTNACC | 1 cut(s) | 394 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 1845, 2097 |
| BstFNI | CGCG | 3 cut(s) | 75, 943, 3880 |
| BstHHI | GCGC | 5 cut(s) | 556, 856, 2243, 3427, 3721 |
| BstMAI | GTCTC | 9 cut(s) | 8, 63, 75, 462, 486, 525, 1204, 1357, 2331 |
| BstNI | CCWGG | 8 cut(s) | 1080, 2094, 2157, 2238, 2313, 2430, 3796, 3812 |
| BstNSI | RCATGY | 3 cut(s) | 1727, 2498, 4369 |
| BstPAI | GACNNNNGTC | 1 cut(s) | 2314 |
| BstPI | GGTNACC | 1 cut(s) | 394 |
| BstSFI | CTRYAG | 6 cut(s) | 2385, 2783, 2789, 3950, 4587, 4692 |
| BstSLI | GKGCMC | 3 cut(s) | 1874, 2506, 4140 |
| BstUI | CGCG | 3 cut(s) | 75, 943, 3880 |
| BstV2I | GAAGAC | 5 cut(s) | 180, 309, 1676, 2763, 4494 |
| BstX2I | RGATCY | 5 cut(s) | 1082, 1393, 1418, 1462, 2027 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 2191 |
| BstYI | RGATCY | 5 cut(s) | 1082, 1393, 1418, 1462, 2027 |
| Bsu15I | ATCGAT | 2 cut(s) | 545, 977 |
| BsuI | GTATCC | 2 cut(s) | 1823, 3475 |
| BsuTUI | ATCGAT | 2 cut(s) | 545, 977 |
| BtgI | CCRYGG | 1 cut(s) | 1860 |
| BtgZI | GCGATG | 2 cut(s) | 648, 2426 |
| BtrI | CACGTC | 1 cut(s) | 540 |
| BtsI | GCAGTG | 4 cut(s) | 918, 1003, 3043, 4584 |
| BveI | ACCTGC | 2 cut(s) | 2404, 4105 |
| CaiI | CAGNNNCTG | 4 cut(s) | 1085, 2030, 2449, 4583 |
| CciI | TCATGA | 1 cut(s) | 460 |
| CfoI | GCGC | 5 cut(s) | 556, 856, 2243, 3427, 3721 |
| Cfr10I | RCCGGY | 2 cut(s) | 382, 504 |
| ClaI | ATCGAT | 2 cut(s) | 545, 977 |
| CpoI | CGGWCCG | 1 cut(s) | 526 |
| CspCI | CAANNNNNGTGG | 4 cut(s) | 1002, 1037, 4560, 4595 |
| CspI | CGGWCCG | 1 cut(s) | 526 |
| EaeI | YGGCCR | 6 cut(s) | 530, 1023, 1119, 1805, 1925, 2006 |
| EciI | GGCGGA | 2 cut(s) | 279, 904 |
| Ecl136II | GAGCTC | 1 cut(s) | 1770 |
| Eco130I | CCWWGG | 3 cut(s) | 1860, 4049, 4186 |
| Eco24I | GRGCYC | 2 cut(s) | 949, 1772 |
| Eco31I | GGTCTC | 4 cut(s) | 63, 75, 462, 486 |
| Eco47I | GGWCC | 9 cut(s) | 58, 88, 94, 106, 526, 623, 737, 2522, 4729 |
| Eco53kI | GAGCTC | 1 cut(s) | 1770 |
| Eco57I | CTGAAG | 4 cut(s) | 2579, 3291, 3578, 3584 |
| Eco91I | GGTNACC | 1 cut(s) | 394 |
| EcoICRI | GAGCTC | 1 cut(s) | 1770 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 1845, 2097 |
| EcoO109I | RGGNCCY | 1 cut(s) | 2522 |
| EcoO65I | GGTNACC | 1 cut(s) | 394 |
| EcoRI | GAATTC | 4 cut(s) | 886, 3622, 3787, 4066 |
| EcoRII | CCWGG | 8 cut(s) | 1078, 2092, 2155, 2236, 2311, 2428, 3794, 3810 |
| EcoT14I | CCWWGG | 3 cut(s) | 1860, 4049, 4186 |
| EcoT22I | ATGCAT | 2 cut(s) | 2473, 4641 |
| EcoT38I | GRGCYC | 2 cut(s) | 949, 1772 |
| ErhI | CCWWGG | 3 cut(s) | 1860, 4049, 4186 |
| Esp3I | CGTCTC | 3 cut(s) | 8, 525, 1357 |
| FaqI | GGGAC | 7 cut(s) | 71, 101, 107, 119, 3958, 4234, 4510 |
| FauI | CCCGC | 3 cut(s) | 35, 958, 3490 |
| FauNDI | CATATG | 1 cut(s) | 3528 |
| FbaI | TGATCA | 1 cut(s) | 3673 |
| FblI | GTMKAC | 1 cut(s) | 1010 |
| FriOI | GRGCYC | 2 cut(s) | 949, 1772 |
| GlaI | GCGC | 5 cut(s) | 555, 855, 2242, 3426, 3720 |
| GsaI | CCCAGC | 3 cut(s) | 1156, 1723, 3072 |
| GsuI | CTGGAG | 5 cut(s) | 1410, 1637, 1866, 2220, 4140 |
| HhaI | GCGC | 5 cut(s) | 556, 856, 2243, 3427, 3721 |
| Hin1I | GRCGYC | 3 cut(s) | 17, 299, 4499 |
| Hin6I | GCGC | 5 cut(s) | 554, 854, 2241, 3425, 3719 |
| HinP1I | GCGC | 5 cut(s) | 554, 854, 2241, 3425, 3719 |
| HincII | GTYRAC | 5 cut(s) | 651, 867, 2636, 4317, 4597 |
| HindII | GTYRAC | 5 cut(s) | 651, 867, 2636, 4317, 4597 |
| HindIII | AAGCTT | 7 cut(s) | 510, 1527, 2169, 3087, 3339, 4092, 4380 |
| HpaI | GTTAAC | 1 cut(s) | 4597 |
| Hpy99I | CGWCG | 7 cut(s) | 22, 215, 236, 301, 316, 832, 4460 |
| HpyCH4IV | ACGT | 6 cut(s) | 17, 299, 518, 539, 4458, 4499 |
| HpySE526I | ACGT | 6 cut(s) | 17, 299, 518, 539, 4458, 4499 |
| Hsp92I | GRCGYC | 3 cut(s) | 17, 299, 4499 |
| HspAI | GCGC | 5 cut(s) | 554, 854, 2241, 3425, 3719 |
| KroI | GCCGGC | 1 cut(s) | 382 |
| KroNI | GCCGGC | 1 cut(s) | 384 |
| Ksp22I | TGATCA | 1 cut(s) | 3673 |
| KspAI | GTTAAC | 1 cut(s) | 4597 |
| LguI | GCTCTTC | 1 cut(s) | 1542 |
| MaeII | ACGT | 6 cut(s) | 17, 299, 518, 539, 4458, 4499 |
| MbiI | CCGCTC | 1 cut(s) | 42 |
| MfeI | CAATTG | 1 cut(s) | 4232 |
| MflI | RGATCY | 5 cut(s) | 1082, 1393, 1418, 1462, 2027 |
| MhlI | GDGCHC | 5 cut(s) | 949, 1772, 1874, 2506, 4140 |
| MlsI | TGGCCA | 3 cut(s) | 1025, 1121, 2008 |
| MluNI | TGGCCA | 3 cut(s) | 1025, 1121, 2008 |
| MlyI | GAGTC | 4 cut(s) | 1169, 1243, 2530, 4624 |
| MmeI | TCCRAC | 3 cut(s) | 469, 593, 4463 |
| Mox20I | TGGCCA | 3 cut(s) | 1025, 1121, 2008 |
| Mph1103I | ATGCAT | 2 cut(s) | 2473, 4641 |
| MroNI | GCCGGC | 1 cut(s) | 382 |
| MroXI | GAANNNNTTC | 1 cut(s) | 2000 |
| MscI | TGGCCA | 3 cut(s) | 1025, 1121, 2008 |
| MseI | TTAA | 6 cut(s) | 354, 771, 1295, 1499, 3438, 4596 |
| MslI | CAYNNNNRTG | 3 cut(s) | 908, 2499, 3165 |
| Msp20I | TGGCCA | 3 cut(s) | 1025, 1121, 2008 |
| MspA1I | CMGCKG | 7 cut(s) | 379, 1886, 2018, 2788, 2833, 4592, 4766 |
| MunI | CAATTG | 1 cut(s) | 4232 |
| Mva1269I | GAATGC | 1 cut(s) | 4387 |
| MvaI | CCWGG | 8 cut(s) | 1080, 2094, 2157, 2238, 2313, 2430, 3796, 3812 |
| MvnI | CGCG | 3 cut(s) | 75, 943, 3880 |
| NaeI | GCCGGC | 1 cut(s) | 384 |
| NciI | CCSGG | 9 cut(s) | 62, 86, 92, 110, 1215, 1373, 1809, 3399, 4087 |
| NcoI | CCATGG | 1 cut(s) | 1860 |
| NdeI | CATATG | 1 cut(s) | 3528 |
| NgoMIV | GCCGGC | 1 cut(s) | 382 |
| NmeAIII | GCCGAG | 2 cut(s) | 1275, 1903 |
| NmuCI | GTSAC | 5 cut(s) | 300, 394, 1477, 3353, 4518 |
| NsiI | ATGCAT | 2 cut(s) | 2473, 4641 |
| NspI | RCATGY | 3 cut(s) | 1727, 2498, 4369 |
| NspV | TTCGAA | 2 cut(s) | 1208, 4064 |
| PagI | TCATGA | 1 cut(s) | 460 |
| PaqCI | CACCTGC | 2 cut(s) | 2404, 4105 |
| PciI | ACATGT | 1 cut(s) | 2494 |
| PciSI | GCTCTTC | 1 cut(s) | 1542 |
| PcsI | WCGNNNNNNNCGW | 2 cut(s) | 2932, 4025 |
| PctI | GAATGC | 1 cut(s) | 4387 |
| PdiI | GCCGGC | 1 cut(s) | 384 |
| PdmI | GAANNNNTTC | 1 cut(s) | 2000 |
| PflFI | GACNNNGTC | 1 cut(s) | 4018 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 4163 |
| PfoI | TCCNGGA | 1 cut(s) | 2428 |
| PleI | GAGTC | 4 cut(s) | 1168, 1242, 2530, 4624 |
| PpsI | GAGTC | 4 cut(s) | 1168, 1242, 2530, 4624 |
| PpuMI | RGGWCCY | 1 cut(s) | 2522 |
| PscI | ACATGT | 1 cut(s) | 2494 |
| PshAI | GACNNNNGTC | 1 cut(s) | 2314 |
| Psp124BI | GAGCTC | 1 cut(s) | 1772 |
| Psp5II | RGGWCCY | 1 cut(s) | 2522 |
| Psp6I | CCWGG | 8 cut(s) | 1078, 2092, 2155, 2236, 2311, 2428, 3794, 3810 |
| PspEI | GGTNACC | 1 cut(s) | 394 |
| PspFI | CCCAGC | 3 cut(s) | 1152, 1719, 3068 |
| PspGI | CCWGG | 8 cut(s) | 1078, 2092, 2155, 2236, 2311, 2428, 3794, 3810 |
| PspPPI | RGGWCCY | 1 cut(s) | 2522 |
| PstI | CTGCAG | 3 cut(s) | 2389, 2793, 4591 |
| PstNI | CAGNNNCTG | 4 cut(s) | 1085, 2030, 2449, 4583 |
| PsuI | RGATCY | 5 cut(s) | 1082, 1393, 1418, 1462, 2027 |
| PsyI | GACNNNGTC | 1 cut(s) | 4018 |
| PvuII | CAGCTG | 5 cut(s) | 1886, 2018, 2788, 4592, 4766 |
| RseI | CAYNNNNRTG | 3 cut(s) | 908, 2499, 3165 |
| Rsr2I | CGGWCCG | 1 cut(s) | 526 |
| RsrII | CGGWCCG | 1 cut(s) | 526 |
| SacI | GAGCTC | 1 cut(s) | 1772 |
| SapI | GCTCTTC | 1 cut(s) | 1542 |
| SaqAI | TTAA | 6 cut(s) | 354, 771, 1295, 1499, 3438, 4596 |
| SchI | GAGTC | 4 cut(s) | 1169, 1243, 2530, 4624 |
| SduI | GDGCHC | 5 cut(s) | 949, 1772, 1874, 2506, 4140 |
| SfcI | CTRYAG | 6 cut(s) | 2385, 2783, 2789, 3950, 4587, 4692 |
| SfuI | TTCGAA | 2 cut(s) | 1208, 4064 |
| SinI | GGWCC | 9 cut(s) | 58, 88, 94, 106, 526, 623, 737, 2522, 4729 |
| SmiMI | CAYNNNNRTG | 3 cut(s) | 908, 2499, 3165 |
| SmlI | CTYRAG | 4 cut(s) | 675, 1244, 2284, 3084 |
| SmoI | CTYRAG | 4 cut(s) | 675, 1244, 2284, 3084 |
| SspI | AATATT | 2 cut(s) | 1645, 2944 |
| SstI | GAGCTC | 1 cut(s) | 1772 |
| StyI | CCWWGG | 3 cut(s) | 1860, 4049, 4186 |
| TaiI | ACGT | 6 cut(s) | 20, 302, 521, 542, 4461, 4502 |
| TaqII | GACCGA | 1 cut(s) | 111 |
| TatI | WGTACW | 2 cut(s) | 4347, 4397 |
| TauI | GCSGC | 6 cut(s) | 249, 261, 264, 640, 2836, 4678 |
| Tru1I | TTAA | 6 cut(s) | 354, 771, 1295, 1499, 3438, 4596 |
| Tru9I | TTAA | 6 cut(s) | 354, 771, 1295, 1499, 3438, 4596 |
| TseFI | GTSAC | 5 cut(s) | 300, 394, 1477, 3353, 4518 |
| Tsp45I | GTSAC | 5 cut(s) | 300, 394, 1477, 3353, 4518 |
| TspGWI | ACGGA | 5 cut(s) | 409, 1508, 1583, 1780, 3373 |
| Tth111I | GACNNNGTC | 1 cut(s) | 4018 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 4163 |
| VneI | GTGCAC | 1 cut(s) | 2502 |
| VpaK11BI | GGWCC | 9 cut(s) | 58, 88, 94, 106, 526, 623, 737, 2522, 4729 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 1845, 2097 |
| XbaI | TCTAGA | 1 cut(s) | 818 |
| XceI | RCATGY | 3 cut(s) | 1727, 2498, 4369 |
| XmaJI | CCTAGG | 1 cut(s) | 4186 |
| XmiI | GTMKAC | 1 cut(s) | 1010 |
| XmnI | GAANNNNTTC | 1 cut(s) | 2000 |
| ZraI | GACGTC | 3 cut(s) | 18, 300, 4500 |
| Zsp2I | ATGCAT | 2 cut(s) | 2473, 4641 |