AT3G22830

Transcription factor

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0011743
Physical Location & Seq
Forward (+)
8078789 .. 8081059
2271 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G22830.1

Sequence Viewer

Length: 1221 bp
ATGGATCCTTCATTTAGGTTCATTAAAGAGGAGTTTCCTGCTGGATTCAGTGATTCTCCATCACCACCATCTTCTTCTTCATACCTTTATTCATCTTCCATGGCTGAAGCAGCCATAAATGATCCAACAACATTGAGCTATCCACAACCATTAGAAGGTCTCCATGAATCAGGGCCACCTCCATTTTTGACAAAGACATATGACTTGGTGGAAGATTCAAGAACCAATCATGTCGTGTCTTGGAGCAAATCCAATAACAGCTTCATTGTCTGGGATCCACAGGCCTTTTCTGTAACTCTCCTTCCCAGATTCTTCAAGCACAATAACTTCTCCAGTTTTGTCCGCCAGCTCAACACATATGGTTTCAGAAAGGTGAATCCGGATCGGTGGGAGTTTGCAAACGAAGGGTTTCTTAGAGGGCAAAAGCATCTCCTCAAGAACATAAGGAGAAGAAAAACAAGTAATAATAGTAATCAAATGCAACAACCTCAAAGTTCTGAACAACAATCTCTAGACAATTTTTGCATAGAAGTGGGTAGGTACGGTCTAGATGGAGAGATGGACAGCCTAAGGCGAGACAAGCAAGTGTTGATGATGGAGCTAGTGAGACTAAGACAGCAACAACAAAGCACCAAAATGTATCTCACATTGATTGAAGAGAAGCTCAAGAAGACCGAGTCAAAACAAAAACAAATGATGAGCTTCCTTGCCCGCGCAATGCAGAATCCAGATTTTATTCAGCAGCTAGTAGAGCAGAAGGAAAAGAGGAAAGAGATCGAAGAGGCGATCAGCAAGAAGAGACAAAGACCGATCGATCAAGGAAAAAGAAATGTGGAAGATTATGGTGATGAAAGTGGTTATGGGAATGATGTTGCAGCCTCATCCTCAGCATTGATTGGTATGAGTCAGGAATATACATATGGAAACATGTCTGAATTCGAGATGTCGGAGTTGGACAAACTTGCTATGCACATTCAAGGACTTGGAGATAATTCCAGTGCTAGGGAAGAAGTCTTGAATGTGGAAAAAGGAAATGATGAGGAAGAAGTAGAAGATCAACAACAAGGGTACCATAAGGAGAACAATGAGATTTATGGTGAAGGTTTTTGGGAAGATTTGTTAAATGAAGGTCAAAATTTTGATTTTGAAGGAGATCAAGAAAATGTTGATGTGTTAATTCAGCAACTTGGTTATTTGGGTTCTAGTTCACACACTAATTAA

Protein Analysis

406

Amino Acids

46.74

Weight (kDa)

4.94

Isoelectric Point (pI)

65.32

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
HSF_DNA-bind PF00447 62 - 151 9.5e-30 HSF-type DNA-binding
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0011743)

Species Orthologous Gene IDs
arabidopsis_thaliana AT3G22830
fragaria_vesca FvH4_4g01180 FvH4_4g01180
malus_domestica MD13G1199700.v1.1 MD16G1199800.v1.1
prunus_persica Prupe.1G021200_v2.0.a1
pyrus_communis pycom13g17330 pycom16g16830
rosa_chinensis RchiOBHm_Chr4g0387751
rosa_laevigata RLG00000010097
rosa_multiflora Rmu_co8508987.1_g000001 Rmu_sc0008916.1_g000004
rosa_roxburghii Rroxscaffold_5G00334390
rosa_rugosa Rorug03G0313000
rosa_samantha Rh4AG018200 Rh4BG013100 Rh4CG019400 Rh4DG014000
rosa_wichuraiana Rw4G001190

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 1068
AccB1I GGYRCC 1 cut(s) 1068
AccII CGCG 1 cut(s) 714
AccIII TCCGGA 1 cut(s) 379
AciI CCGC 2 cut(s) 343, 712
AclWI GGATC 5 cut(s) 12, 116, 269, 282, 390
AcsI RAATTY 2 cut(s) 935, 1135
AcuI CTGAAG 1 cut(s) 126
AfaI GTAC 2 cut(s) 542, 1070
AfiI CCNNNNNNNGG 2 cut(s) 155, 1002
AflIII ACRYGT 1 cut(s) 927
AgsI TTSAA 6 cut(s) 219, 316, 656, 977, 1018, 1148
AjuI GAANNNNNNNTTGG 2 cut(s) 245, 277
AluBI AGCT 7 cut(s) 138, 261, 349, 601, 664, 702, 745
AluI AGCT 7 cut(s) 138, 261, 349, 601, 664, 702, 745
Alw26I GTCTC 4 cut(s) 164, 570, 601, 793
AlwI GGATC 5 cut(s) 12, 116, 269, 282, 390
Aor13HI TCCGGA 1 cut(s) 379
AoxI GGCC 2 cut(s) 173, 282
ApeKI GCWGC 3 cut(s) 110, 742, 875
ApoI RAATTY 2 cut(s) 935, 1135
Asp700I GAANNNNTTC 1 cut(s) 408
Asp718I GGTACC 1 cut(s) 1068
AspLEI GCGC 1 cut(s) 716
AspS9I GGNCC 1 cut(s) 173
AsuHPI GGTGA 4 cut(s) 54, 385, 857, 1109
AxyI CCTNAGG 1 cut(s) 569
BaeI ACNNNNGTAYC 2 cut(s) 1052, 1085
BamHI GGATCC 2 cut(s) 4, 274
BanI GGYRCC 1 cut(s) 1068
BarI GAAGNNNNNNTAC 2 cut(s) 285, 317
BbsI GAAGAC 1 cut(s) 677
BbvCI CCTCAGC 1 cut(s) 886
BbvI GCAGC 3 cut(s) 122, 754, 887
BccI CCATC 5 cut(s) 67, 76, 545, 553, 589
BcoDI GTCTC 4 cut(s) 164, 570, 601, 793
BfaI CTAG 6 cut(s) 512, 548, 602, 746, 1002, 1203
BisI GCNGC 3 cut(s) 111, 743, 876
BlsI GCNGC 3 cut(s) 112, 744, 877
BmgT120I GGNCC 1 cut(s) 173
BmiI GGNNCC 3 cut(s) 6, 276, 1070
BmsI GCATC 1 cut(s) 436
BpiI GAAGAC 1 cut(s) 677
BpmI CTGGAG 1 cut(s) 316
Bpu10I CCTNAGC 1 cut(s) 886
BpuEI CTTGAG 2 cut(s) 419, 650
Bsa29I ATCGAT 1 cut(s) 813
BsaI GGTCTC 1 cut(s) 164
BsaJI CCNNGG 1 cut(s) 99
BsaWI WCCGGW 1 cut(s) 379
Bsc4I CCNNNNNNNGG 2 cut(s) 155, 1002
Bse1I ACTGG 2 cut(s) 333, 996
Bse21I CCTNAGG 1 cut(s) 569
Bse3DI GCAATG 1 cut(s) 723
BseAI TCCGGA 1 cut(s) 379
BseCI ATCGAT 1 cut(s) 813
BseDI CCNNGG 1 cut(s) 99
BseGI GGATG 1 cut(s) 881
BseLI CCNNNNNNNGG 2 cut(s) 155, 1002
BseMI GCAATG 1 cut(s) 723
BseMII CTCAG 1 cut(s) 900
BseNI ACTGG 2 cut(s) 333, 996
BseRI GAGGAG 2 cut(s) 44, 422
BseXI GCAGC 3 cut(s) 122, 754, 887
Bsh1236I CGCG 1 cut(s) 714
Bsh1285I CGRYCG 1 cut(s) 813
BshFI GGCC 2 cut(s) 175, 284
BshNI GGYRCC 1 cut(s) 1068
BshVI ATCGAT 1 cut(s) 813
BsiEI CGRYCG 1 cut(s) 813
BsiSI CCGG 1 cut(s) 380
BslI CCNNNNNNNGG 2 cut(s) 155, 1002
BsmAI GTCTC 4 cut(s) 164, 570, 601, 793
BsnI GGCC 2 cut(s) 175, 284
Bso31I GGTCTC 1 cut(s) 164
Bsp13I TCCGGA 1 cut(s) 379
Bsp19I CCATGG 1 cut(s) 99
BspACI CCGC 2 cut(s) 343, 712
BspANI GGCC 2 cut(s) 175, 284
BspCNI CTCAG 1 cut(s) 899
BspDI ATCGAT 1 cut(s) 813
BspEI TCCGGA 1 cut(s) 379
BspFNI CGCG 1 cut(s) 714
BspLI GGNNCC 3 cut(s) 6, 276, 1070
BspPI GGATC 5 cut(s) 12, 116, 269, 282, 390
BspT107I GGYRCC 1 cut(s) 1068
BspTNI GGTCTC 1 cut(s) 164
BsrDI GCAATG 1 cut(s) 723
BsrI ACTGG 2 cut(s) 333, 996
BssECI CCNNGG 1 cut(s) 99
BssT1I CCWWGG 1 cut(s) 99
Bst4CI ACNGT 1 cut(s) 545
Bst6I CTCTTC 3 cut(s) 651, 774, 791
BstC8I GCNNGC 2 cut(s) 347, 712
BstDEI CTNAG 4 cut(s) 413, 569, 611, 886
BstDSI CCRYGG 1 cut(s) 99
BstF5I GGATG 1 cut(s) 881
BstFNI CGCG 1 cut(s) 714
BstHHI GCGC 1 cut(s) 716
BstMAI GTCTC 4 cut(s) 164, 570, 601, 793
BstMCI CGRYCG 1 cut(s) 813
BstMWI GCNNNNNNNGC 3 cut(s) 110, 580, 751
BstNSI RCATGY 1 cut(s) 931
BstUI CGCG 1 cut(s) 714
BstV1I GCAGC 3 cut(s) 122, 754, 887
BstV2I GAAGAC 1 cut(s) 677
BstX2I RGATCY 2 cut(s) 4, 274
BstYI RGATCY 2 cut(s) 4, 274
Bsu15I ATCGAT 1 cut(s) 813
Bsu36I CCTNAGG 1 cut(s) 569
BsuRI GGCC 2 cut(s) 175, 284
BsuTUI ATCGAT 1 cut(s) 813
BtgI CCRYGG 1 cut(s) 99
BtsCI GGATG 1 cut(s) 881
BtsIMutI CAGTG 2 cut(s) 55, 1003
Cac8I GCNNGC 2 cut(s) 347, 712
CfoI GCGC 1 cut(s) 716
Cfr13I GGNCC 1 cut(s) 173
ClaI ATCGAT 1 cut(s) 813
Csp6I GTAC 2 cut(s) 541, 1069
CviAII CATG 4 cut(s) 100, 164, 230, 928
CviQI GTAC 2 cut(s) 541, 1069
DdeI CTNAG 4 cut(s) 413, 569, 611, 886
Eam1104I CTCTTC 3 cut(s) 651, 774, 791
EarI CTCTTC 3 cut(s) 651, 774, 791
EciI GGCGGA 1 cut(s) 332
Eco130I CCWWGG 1 cut(s) 99
Eco147I AGGCCT 1 cut(s) 284
Eco31I GGTCTC 1 cut(s) 164
Eco57I CTGAAG 1 cut(s) 126
Eco81I CCTNAGG 1 cut(s) 569
EcoRI GAATTC 1 cut(s) 935
EcoT14I CCWWGG 1 cut(s) 99
ErhI CCWWGG 1 cut(s) 99
FaeI CATG 4 cut(s) 103, 167, 233, 931
FalI AAGNNNNNCTT 2 cut(s) 396, 428
FatI CATG 4 cut(s) 99, 163, 229, 927
FauI CCCGC 1 cut(s) 719
FauNDI CATATG 3 cut(s) 199, 358, 919
Fnu4HI GCNGC 3 cut(s) 111, 743, 876
FokI GGATG 1 cut(s) 868
Fsp4HI GCNGC 3 cut(s) 111, 743, 876
FspBI CTAG 6 cut(s) 512, 548, 602, 746, 1002, 1203
GlaI GCGC 1 cut(s) 715
GluI GCNGC 3 cut(s) 111, 743, 876
GsuI CTGGAG 1 cut(s) 316
HaeIII GGCC 2 cut(s) 175, 284
HapII CCGG 1 cut(s) 380
HhaI GCGC 1 cut(s) 716
Hin1II CATG 4 cut(s) 103, 167, 233, 931
Hin6I GCGC 1 cut(s) 714
HinP1I GCGC 1 cut(s) 714
HinfI GANTC 9 cut(s) 45, 53, 167, 215, 309, 376, 677, 724, 904
HpaII CCGG 1 cut(s) 380
HphI GGTGA 4 cut(s) 54, 385, 857, 1109
Hpy166II GTNNAC 1 cut(s) 1208
Hpy188I TCNGA 4 cut(s) 368, 499, 934, 949
Hpy8I GTNNAC 1 cut(s) 1208
HpyAV CCTTC 8 cut(s) 18, 149, 311, 398, 751, 1094, 1121, 1142
HpyCH4III ACNGT 1 cut(s) 545
HpyCH4V TGCA 6 cut(s) 398, 481, 525, 721, 875, 970
HpyF10VI GCNNNNNNNGC 3 cut(s) 110, 580, 751
HpyF3I CTNAG 4 cut(s) 413, 569, 611, 886
Hsp92II CATG 4 cut(s) 103, 167, 233, 931
HspAI GCGC 1 cut(s) 714
Kpn2I TCCGGA 1 cut(s) 379
KpnI GGTACC 1 cut(s) 1072
LmnI GCTCC 2 cut(s) 243, 598
Lsp1109I GCAGC 3 cut(s) 122, 754, 887
LweI GCATC 1 cut(s) 436
MaeI CTAG 6 cut(s) 512, 548, 602, 746, 1002, 1203
MaeIII GTNAC 1 cut(s) 292
MflI RGATCY 2 cut(s) 4, 274
MluCI AATT 6 cut(s) 517, 935, 991, 1135, 1176, 1216
MlyI GAGTC 2 cut(s) 686, 913
MmeI TCCRAC 3 cut(s) 149, 927, 933
MroI TCCGGA 1 cut(s) 379
MroXI GAANNNNTTC 1 cut(s) 408
MseI TTAA 4 cut(s) 24, 1121, 1175, 1219
MslI CAYNNNNRTG 2 cut(s) 530, 635
MspI CCGG 1 cut(s) 380
MvnI CGCG 1 cut(s) 714
MwoI GCNNNNNNNGC 3 cut(s) 110, 580, 751
NcoI CCATGG 1 cut(s) 99
NdeI CATATG 3 cut(s) 199, 358, 919
NlaIII CATG 4 cut(s) 103, 167, 233, 931
NlaIV GGNNCC 3 cut(s) 6, 276, 1070
NspI RCATGY 1 cut(s) 931
PceI AGGCCT 1 cut(s) 284
PciI ACATGT 1 cut(s) 927
PdmI GAANNNNTTC 1 cut(s) 408
PfeI GAWTC 7 cut(s) 45, 53, 167, 215, 309, 376, 724
PflFI GACNNNGTC 1 cut(s) 676
PkrI GCNGC 3 cut(s) 112, 744, 877
Ple19I CGATCG 1 cut(s) 813
PleI GAGTC 2 cut(s) 685, 912
PpsI GAGTC 2 cut(s) 685, 912
PscI ACATGT 1 cut(s) 927
PspN4I GGNNCC 3 cut(s) 6, 276, 1070
PspPI GGNCC 1 cut(s) 173
PsuI RGATCY 2 cut(s) 4, 274
PsyI GACNNNGTC 1 cut(s) 676
PvuI CGATCG 1 cut(s) 813
RsaI GTAC 2 cut(s) 542, 1070
RsaNI GTAC 2 cut(s) 541, 1069
RseI CAYNNNNRTG 2 cut(s) 530, 635
SaqAI TTAA 4 cut(s) 24, 1121, 1175, 1219
SatI GCNGC 3 cut(s) 111, 743, 876
Sau96I GGNCC 1 cut(s) 173
SchI GAGTC 2 cut(s) 686, 913
SfaNI GCATC 1 cut(s) 436
SmiMI CAYNNNNRTG 2 cut(s) 530, 635
SmlI CTYRAG 2 cut(s) 434, 665
SmoI CTYRAG 2 cut(s) 434, 665
Sse9I AATT 6 cut(s) 517, 935, 991, 1135, 1176, 1216
SseBI AGGCCT 1 cut(s) 284
SsiI CCGC 2 cut(s) 343, 712
SspMI CTAG 6 cut(s) 512, 548, 602, 746, 1002, 1203
StuI AGGCCT 1 cut(s) 284
StyI CCWWGG 1 cut(s) 99
TaaI ACNGT 1 cut(s) 545
TaqI TCGA 3 cut(s) 777, 813, 939
TaqII GACCGA 2 cut(s) 689, 823
TasI AATT 6 cut(s) 517, 935, 991, 1135, 1176, 1216
TfiI GAWTC 7 cut(s) 45, 53, 167, 215, 309, 376, 724
Tru1I TTAA 4 cut(s) 24, 1121, 1175, 1219
Tru9I TTAA 4 cut(s) 24, 1121, 1175, 1219
TscAI CASTG 2 cut(s) 55, 1003
TseI GCWGC 3 cut(s) 110, 742, 875
TspDTI ATGAA 7 cut(s) 10, 69, 81, 180, 253, 864, 1140
TspRI CASTG 2 cut(s) 55, 1003
Tth111I GACNNNGTC 1 cut(s) 676
XapI RAATTY 2 cut(s) 935, 1135
XbaI TCTAGA 2 cut(s) 511, 547
XceI RCATGY 1 cut(s) 931
XmnI GAANNNNTTC 1 cut(s) 408
XspI CTAG 6 cut(s) 512, 548, 602, 746, 1002, 1203
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.