Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0011743

Physical Location & Seq

Genomic Coordinates Forward (+)

12840076 .. 12841624

Gene Structure 1549 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g16830.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1071 bp

ATGAATCTCGATCAAGACCCAGTAAGCTTTTCGTCTTCGAGTGCGGCCCCTGATCATCCTCTGCCATTGGAGAGGCTCTATGACCAAGGTCCTCCGCCATTTCTCGCCAAAACGTATGACATCGTCGATGACCCATCAACCAACCACATAGTTTCATGGAGCAGAGACAACAACAGCTTTGTTGTTTTGGATCCCAATAGCTTTTCCATGAGTCTTCTCCCCAGATATTTCAAGCACAACAATTTCTCCAGCTTTGTCAGGCAGCTCAACACCTATGGATTTAGGAAGGTTGATACAGACAGATGGGAGTTTGCTAATGAAGCGTTTCTCAGAGGGCAAAAGCATCTTTTAAAGAACATCAGGAGGAGGAAGGCATCCCATCTTCCTCAAGCTTCACAGAAAACTTTGGACTCTTGTGTAGAAGTTGGGAGGTTTGGATTGGACATAGAGATCGACCAGTTGAGGCGCAATAAACAAGTACTCATGGGGGAACTAGTGAAGCTTCGACAGCAACAGCAAGCTAATAGAGTTTACCTCCAAGGAATGGAAGATAGACTGAAGAGGACAGAGTTGAAACAGCAACATATGTTGAGTTTCTTGGCAAGGGCAATGCAGAATCCTAATTTTGTACAACAATTGTCGCAGCAGAAGGACTTAAGGAAGGAACTGGAGAAAGCAGTTACCAAGAAGAGAAGGCGGACTATTGAGCAAGGGCCTAGTAATGTTGAGGTGGATGAATTAGGCCATGTTGGAATAGAGACTTATGTTAAAGTTGAACCACAAGAATATGGTGACATTTCTGATCAGTTTGAAGTTTCAGAGTTGGACCAATTTGCTATAGACATGCCGGGGGTAAGCGGAAGCCAAAATGTTCATGGTGACCAAGAATGTATAGAGAGAGACGAAGAACATGAAGGTAGAGGCAAAGACCTGGATAAGAGTTATTGGCAAGACTTGTTCAATGAGAATATTGATGAAGAAATTGGTTTGCTTGGTGTTCAAGAAGAGGATGAGGAAGATGTCAATGTGTTAATTGAGGAGCTGGGTCTTTTAGCTCCCAGTCCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

357

Amino Acids

41.1

Weight (kDa)

5.06

Isoelectric Point (pI)

61.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22830
fragaria_vesca	FvH4_4g01180 FvH4_4g01180
malus_domestica	MD13G1199700.v1.1 MD16G1199800.v1.1
prunus_persica	Prupe.1G021200_v2.0.a1
pyrus_communis	pycom13g17330 pycom16g16830
rosa_chinensis	RchiOBHm_Chr4g0387751
rosa_laevigata	RLG00000010097
rosa_multiflora	Rmu_co8508987.1_g000001 Rmu_sc0008916.1_g000004
rosa_roxburghii	Rroxscaffold_5G00334390
rosa_rugosa	Rorug03G0313000
rosa_samantha	Rh4AG018200 Rh4BG013100 Rh4CG019400 Rh4DG014000
rosa_wichuraiana	Rw4G001190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	544
AciI	CCGC	4 cut(s)	44, 95, 697, 858
AclWI	GGATC	2 cut(s)	185, 198
AcuI	CTGAAG	1 cut(s)	578
AfaI	GTAC	2 cut(s)	480, 630
AfiI	CCNNNNNNNGG	1 cut(s)	544
AflII	CTTAAG	1 cut(s)	655
AgsI	TTSAA	6 cut(s)	232, 574, 776, 812, 961, 1001
AhlI	ACTAGT	1 cut(s)	493
AjnI	CCWGG	1 cut(s)	930
Alw26I	GTCTC	3 cut(s)	159, 752, 894
AlwI	GGATC	2 cut(s)	185, 198
AoxI	GGCC	3 cut(s)	45, 713, 742
ApeKI	GCWGC	2 cut(s)	262, 643
Asp700I	GAANNNNTTC	1 cut(s)	324
AspLEI	GCGC	1 cut(s)	468
AspS9I	GGNCC	4 cut(s)	46, 89, 713, 826
AsuC2I	CCSGG	1 cut(s)	849
AsuHPI	GGTGA	2 cut(s)	803, 890
AvaII	GGWCC	2 cut(s)	89, 826
BamHI	GGATCC	1 cut(s)	190
BbsI	GAAGAC	2 cut(s)	27, 206
BbvI	GCAGC	2 cut(s)	274, 655
BccI	CCATC	3 cut(s)	142, 297, 387
BciT130I	CCWGG	1 cut(s)	932
BclI	TGATCA	2 cut(s)	52, 802
BcnI	CCSGG	1 cut(s)	849
BcoDI	GTCTC	3 cut(s)	159, 752, 894
BcuI	ACTAGT	1 cut(s)	493
BfaI	CTAG	2 cut(s)	494, 717
BfmI	CTRYAG	1 cut(s)	837
BfrI	CTTAAG	1 cut(s)	655
BisI	GCNGC	3 cut(s)	45, 263, 644
BlsI	GCNGC	3 cut(s)	46, 264, 645
BmcAI	AGTACT	1 cut(s)	480
Bme1390I	CCNGG	2 cut(s)	849, 932
Bme18I	GGWCC	2 cut(s)	89, 826
BmgT120I	GGNCC	4 cut(s)	46, 89, 713, 826
BmiI	GGNNCC	2 cut(s)	48, 192
BmrFI	CCNGG	2 cut(s)	849, 932
BmrI	ACTGGG	2 cut(s)	14, 1053
BmsI	GCATC	2 cut(s)	352, 383
BmuI	ACTGGG	2 cut(s)	14, 1053
BoxI	GACNNNNGTC	1 cut(s)	87
BpiI	GAAGAC	2 cut(s)	27, 206
BplI	GAGNNNNNCTC	2 cut(s)	519, 551
BpmI	CTGGAG	2 cut(s)	232, 689
BpuEI	CTTGAG	1 cut(s)	372
BpuMI	CCSGG	1 cut(s)	849
BsaJI	CCNNGG	3 cut(s)	85, 538, 848
BsaXI	ACNNNNNCTCC	2 cut(s)	230, 260
Bsc4I	CCNNNNNNNGG	1 cut(s)	544
Bse1I	ACTGG	4 cut(s)	20, 457, 672, 1059
Bse3DI	GCAATG	1 cut(s)	615
BseBI	CCWGG	1 cut(s)	932
BseDI	CCNNGG	3 cut(s)	85, 538, 848
BseGI	GGATG	4 cut(s)	55, 374, 739, 1015
BseLI	CCNNNNNNNGG	1 cut(s)	544
BseMI	GCAATG	1 cut(s)	615
BseMII	CTCAG	1 cut(s)	343
BseNI	ACTGG	4 cut(s)	20, 457, 672, 1059
BseRI	GAGGAG	2 cut(s)	379, 1052
BseXI	GCAGC	2 cut(s)	274, 655
BseYI	CCCAGC	1 cut(s)	1042
BshFI	GGCC	3 cut(s)	47, 715, 744
BsiSI	CCGG	1 cut(s)	848
BslFI	GGGAC	1 cut(s)	1047
BslI	CCNNNNNNNGG	1 cut(s)	544
BsmAI	GTCTC	3 cut(s)	159, 752, 894
BsmBI	CGTCTC	1 cut(s)	894
BsmFI	GGGAC	1 cut(s)	1047
BsnI	GGCC	3 cut(s)	47, 715, 744
Bsp1407I	TGTACA	1 cut(s)	628
Bsp143I	GATC	5 cut(s)	10, 52, 190, 450, 802
BspACI	CCGC	4 cut(s)	44, 95, 697, 858
BspANI	GGCC	3 cut(s)	47, 715, 744
BspCNI	CTCAG	1 cut(s)	342
BspLI	GGNNCC	2 cut(s)	48, 192
BspPI	GGATC	2 cut(s)	185, 198
BspTI	CTTAAG	1 cut(s)	655
BsrDI	GCAATG	1 cut(s)	615
BsrGI	TGTACA	1 cut(s)	628
BsrI	ACTGG	4 cut(s)	20, 457, 672, 1059
BssECI	CCNNGG	3 cut(s)	85, 538, 848
BssMI	GATC	5 cut(s)	10, 52, 190, 450, 802
BssT1I	CCWWGG	2 cut(s)	85, 538
Bst2UI	CCWGG	1 cut(s)	932
Bst6I	CTCTTC	3 cut(s)	554, 683, 999
BstAFI	CTTAAG	1 cut(s)	655
BstAUI	TGTACA	1 cut(s)	628
BstC8I	GCNNGC	1 cut(s)	519
BstDEI	CTNAG	1 cut(s)	329
BstEII	GGTNACC	1 cut(s)	878
BstF5I	GGATG	4 cut(s)	55, 374, 739, 1015
BstHHI	GCGC	1 cut(s)	468
BstKTI	GATC	5 cut(s)	13, 55, 193, 453, 805
BstMAI	GTCTC	3 cut(s)	159, 752, 894
BstMBI	GATC	5 cut(s)	10, 52, 190, 450, 802
BstMWI	GCNNNNNNNGC	2 cut(s)	320, 508
BstNI	CCWGG	1 cut(s)	932
BstNSI	RCATGY	1 cut(s)	847
BstPAI	GACNNNNGTC	1 cut(s)	87
BstPI	GGTNACC	1 cut(s)	878
BstSCI	CCNGG	2 cut(s)	847, 930
BstSFI	CTRYAG	1 cut(s)	837
BstV1I	GCAGC	2 cut(s)	274, 655
BstV2I	GAAGAC	2 cut(s)	27, 206
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
BsuRI	GGCC	3 cut(s)	47, 715, 744
BtsCI	GGATG	4 cut(s)	55, 374, 739, 1015
Cac8I	GCNNGC	1 cut(s)	519
CfoI	GCGC	1 cut(s)	468
Cfr13I	GGNCC	4 cut(s)	46, 89, 713, 826
Csp6I	GTAC	2 cut(s)	479, 629
CviAII	CATG	7 cut(s)	156, 208, 484, 746, 844, 875, 911
CviQI	GTAC	2 cut(s)	479, 629
DdeI	CTNAG	1 cut(s)	329
DpnI	GATC	5 cut(s)	12, 54, 192, 452, 804
DpnII	GATC	5 cut(s)	10, 52, 190, 450, 802
DraI	TTTAAA	1 cut(s)	351
Eam1104I	CTCTTC	3 cut(s)	554, 683, 999
EarI	CTCTTC	3 cut(s)	554, 683, 999
EciI	GGCGGA	2 cut(s)	84, 712
Eco130I	CCWWGG	2 cut(s)	85, 538
Eco47I	GGWCC	2 cut(s)	89, 826
Eco57I	CTGAAG	1 cut(s)	578
Eco91I	GGTNACC	1 cut(s)	878
EcoO109I	RGGNCCY	2 cut(s)	89, 713
EcoO65I	GGTNACC	1 cut(s)	878
EcoRII	CCWGG	1 cut(s)	930
EcoT14I	CCWWGG	2 cut(s)	85, 538
ErhI	CCWWGG	2 cut(s)	85, 538
Esp3I	CGTCTC	1 cut(s)	894
FaeI	CATG	7 cut(s)	159, 211, 487, 749, 847, 878, 914
FaqI	GGGAC	1 cut(s)	1047
FatI	CATG	7 cut(s)	155, 207, 483, 745, 843, 874, 910
FauNDI	CATATG	1 cut(s)	585
FbaI	TGATCA	2 cut(s)	52, 802
Fnu4HI	GCNGC	3 cut(s)	45, 263, 644
FokI	GGATG	4 cut(s)	42, 361, 746, 1022
Fsp4HI	GCNGC	3 cut(s)	45, 263, 644
FspBI	CTAG	2 cut(s)	494, 717
GlaI	GCGC	1 cut(s)	467
GluI	GCNGC	3 cut(s)	45, 263, 644
GsaI	CCCAGC	1 cut(s)	1046
GsuI	CTGGAG	2 cut(s)	232, 689
HaeIII	GGCC	3 cut(s)	47, 715, 744
HapII	CCGG	1 cut(s)	848
HhaI	GCGC	1 cut(s)	468
Hin1II	CATG	7 cut(s)	159, 211, 487, 749, 847, 878, 914
Hin6I	GCGC	1 cut(s)	466
HinP1I	GCGC	1 cut(s)	466
HindIII	AAGCTT	3 cut(s)	25, 390, 500
HinfI	GANTC	4 cut(s)	4, 211, 410, 616
HpaII	CCGG	1 cut(s)	848
HphI	GGTGA	2 cut(s)	803, 890
Hpy166II	GTNNAC	1 cut(s)	532
Hpy188I	TCNGA	3 cut(s)	332, 802, 820
Hpy188III	TCNNGA	4 cut(s)	8, 14, 361, 1001
Hpy8I	GTNNAC	1 cut(s)	532
Hpy99I	CGWCG	1 cut(s)	128
HpyAV	CCTTC	6 cut(s)	280, 364, 643, 655, 687, 908
HpyCH4IV	ACGT	1 cut(s)	113
HpyCH4V	TGCA	1 cut(s)	613
HpyF10VI	GCNNNNNNNGC	2 cut(s)	320, 508
HpyF3I	CTNAG	1 cut(s)	329
HpySE526I	ACGT	1 cut(s)	113
Hsp92II	CATG	7 cut(s)	159, 211, 487, 749, 847, 878, 914
HspAI	GCGC	1 cut(s)	466
Ksp22I	TGATCA	2 cut(s)	52, 802
Kzo9I	GATC	5 cut(s)	10, 52, 190, 450, 802
LmnI	GCTCC	3 cut(s)	159, 1039, 1060
Lsp1109I	GCAGC	2 cut(s)	274, 655
LweI	GCATC	2 cut(s)	352, 383
MaeI	CTAG	2 cut(s)	494, 717
MaeII	ACGT	1 cut(s)	113
MaeIII	GTNAC	3 cut(s)	679, 791, 878
MalI	GATC	5 cut(s)	12, 54, 192, 452, 804
MboI	GATC	5 cut(s)	10, 52, 190, 450, 802
MfeI	CAATTG	1 cut(s)	635
MflI	RGATCY	1 cut(s)	190
MluCI	AATT	7 cut(s)	241, 622, 635, 737, 830, 981, 1032
MlyI	GAGTC	2 cut(s)	220, 404
MmeI	TCCRAC	2 cut(s)	730, 804
MroXI	GAANNNNTTC	1 cut(s)	324
MseI	TTAA	4 cut(s)	350, 656, 768, 1031
MspCI	CTTAAG	1 cut(s)	655
MspI	CCGG	1 cut(s)	848
MspR9I	CCNGG	2 cut(s)	849, 932
MunI	CAATTG	1 cut(s)	635
MvaI	CCWGG	1 cut(s)	932
MwoI	GCNNNNNNNGC	2 cut(s)	320, 508
NciI	CCSGG	1 cut(s)	849
NdeI	CATATG	1 cut(s)	585
NdeII	GATC	5 cut(s)	10, 52, 190, 450, 802
NlaIII	CATG	7 cut(s)	159, 211, 487, 749, 847, 878, 914
NlaIV	GGNNCC	2 cut(s)	48, 192
NmuCI	GTSAC	2 cut(s)	791, 878
NspI	RCATGY	1 cut(s)	847
PdmI	GAANNNNTTC	1 cut(s)	324
PfeI	GAWTC	2 cut(s)	4, 616
PflFI	GACNNNGTC	1 cut(s)	122
PflMI	CCANNNNNTGG	1 cut(s)	544
PkrI	GCNGC	3 cut(s)	46, 264, 645
PleI	GAGTC	2 cut(s)	219, 404
PpsI	GAGTC	2 cut(s)	219, 404
PpuMI	RGGWCCY	1 cut(s)	89
PshAI	GACNNNNGTC	1 cut(s)	87
Psp5II	RGGWCCY	1 cut(s)	89
Psp6I	CCWGG	1 cut(s)	930
PspEI	GGTNACC	1 cut(s)	878
PspFI	CCCAGC	1 cut(s)	1042
PspGI	CCWGG	1 cut(s)	930
PspN4I	GGNNCC	2 cut(s)	48, 192
PspPI	GGNCC	4 cut(s)	46, 89, 713, 826
PspPPI	RGGWCCY	1 cut(s)	89
PsuI	RGATCY	1 cut(s)	190
PsyI	GACNNNGTC	1 cut(s)	122
RsaI	GTAC	2 cut(s)	480, 630
RsaNI	GTAC	2 cut(s)	479, 629
SaqAI	TTAA	4 cut(s)	350, 656, 768, 1031
SatI	GCNGC	3 cut(s)	45, 263, 644
Sau3AI	GATC	5 cut(s)	10, 52, 190, 450, 802
Sau96I	GGNCC	4 cut(s)	46, 89, 713, 826
ScaI	AGTACT	1 cut(s)	480
SchI	GAGTC	2 cut(s)	220, 404
ScrFI	CCNGG	2 cut(s)	849, 932
SfaNI	GCATC	2 cut(s)	352, 383
SfcI	CTRYAG	1 cut(s)	837
SinI	GGWCC	2 cut(s)	89, 826
SmlI	CTYRAG	2 cut(s)	387, 655
SmoI	CTYRAG	2 cut(s)	387, 655
SpeI	ACTAGT	1 cut(s)	493
Sse9I	AATT	7 cut(s)	241, 622, 635, 737, 830, 981, 1032
SsiI	CCGC	4 cut(s)	44, 95, 697, 858
SspI	AATATT	1 cut(s)	970
SspMI	CTAG	2 cut(s)	494, 717
StyD4I	CCNGG	2 cut(s)	847, 930
StyI	CCWWGG	2 cut(s)	85, 538
TaiI	ACGT	1 cut(s)	116
TaqI	TCGA	5 cut(s)	9, 38, 126, 453, 505
TasI	AATT	7 cut(s)	241, 622, 635, 737, 830, 981, 1032
TatI	WGTACW	2 cut(s)	478, 628
TauI	GCSGC	1 cut(s)	47
TfiI	GAWTC	2 cut(s)	4, 616
Tru1I	TTAA	4 cut(s)	350, 656, 768, 1031
Tru9I	TTAA	4 cut(s)	350, 656, 768, 1031
TseFI	GTSAC	2 cut(s)	791, 878
TseI	GCWGC	2 cut(s)	262, 643
Tsp45I	GTSAC	2 cut(s)	791, 878
TspDTI	ATGAA	7 cut(s)	17, 144, 333, 750, 863, 927, 990
Tth111I	GACNNNGTC	1 cut(s)	122
Van91I	CCANNNNNTGG	1 cut(s)	544
Vha464I	CTTAAG	1 cut(s)	655
VpaK11BI	GGWCC	2 cut(s)	89, 826
XceI	RCATGY	1 cut(s)	847
XcmI	CCANNNNNNNNNTGG	1 cut(s)	872
XmnI	GAANNNNTTC	1 cut(s)	324
XspI	CTAG	2 cut(s)	494, 717
ZrmI	AGTACT	1 cut(s)	480

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.