Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_co8508987.1

Orthogroup ID

OG0011743

Physical Location & Seq

Genomic Coordinates Forward (+)

1 .. 1113

Gene Structure 1113 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_co8508987.1_g000001.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 798 bp

ggatttagaaaggttgacacagataaatgggagtttgctcatgaagtgtttctcagagggcaaaagcatcttttaaagaatatcaggaggaggaggacatctcatcataatgttcattatggttcgaagcaagatctggactcttgcattgaggttggaagtttcggatcattagatggagagattgatcagttgaggcgcgataaggaggttttgatgggggaactggtgaagcttagacaacagcagcagactgctagacttcacctccatggaatggaagataggctcaagaggacagagatgaaacaacaacagatgatgaatttcttggcaagagcaatgcagaatcccaactttttacaacaattggtacaaaagaaggaaagaaagaaacaacttgaggaagcaattacgaagaagagaaggcggactattgaagggcctagtagtattgaggtgggtgcattaggccaaggtggaggagaagctgttgttaaagttgaacccgaatattatggtgacatatctgagctggatgtttcagggttagacaactttgctatggacatgccagtgacagatgaaaacgaaaaggtccatgatggggaagagtgtatggagaaagaagaggaatatgaaaggagaggcaaagatctgtctgcggtattttggaaagagtttttgaatgaaggcgttgatgaagaaattgaagtactcggtgttcaagaagaagatgaggaagatgtcagtgtgttgattgagcagcttggttgcttggtgtccaagcccaagtaa

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

265

Amino Acids

30.69

Weight (kDa)

5.23

Isoelectric Point (pI)

67.03

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22830
fragaria_vesca	FvH4_4g01180 FvH4_4g01180
malus_domestica	MD13G1199700.v1.1 MD16G1199800.v1.1
prunus_persica	Prupe.1G021200_v2.0.a1
pyrus_communis	pycom13g17330 pycom16g16830
rosa_chinensis	RchiOBHm_Chr4g0387751
rosa_laevigata	RLG00000010097
rosa_multiflora	Rmu_co8508987.1_g000001 Rmu_sc0008916.1_g000004
rosa_roxburghii	Rroxscaffold_5G00334390
rosa_rugosa	Rorug03G0313000
rosa_samantha	Rh4AG018200 Rh4BG013100 Rh4CG019400 Rh4DG014000
rosa_wichuraiana	Rw4G001190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	277
AccII	CGCG	1 cut(s)	201
AciI	CCGC	2 cut(s)	430, 665
AclWI	GGATC	1 cut(s)	175
AcsI	RAATTY	1 cut(s)	325
AfaI	GTAC	2 cut(s)	375, 717
AfiI	CCNNNNNNNGG	2 cut(s)	277, 607
AgsI	TTSAA	5 cut(s)	440, 506, 688, 713, 728
AluBI	AGCT	4 cut(s)	235, 491, 535, 769
AluI	AGCT	4 cut(s)	235, 491, 535, 769
AlwI	GGATC	1 cut(s)	175
AoxI	GGCC	2 cut(s)	443, 472
ApeKI	GCWGC	2 cut(s)	247, 766
ApoI	RAATTY	1 cut(s)	325
Asp700I	GAANNNNTTC	1 cut(s)	48
AspLEI	GCGC	1 cut(s)	201
AspS9I	GGNCC	2 cut(s)	443, 598
AsuHPI	GGTGA	3 cut(s)	241, 257, 533
AsuII	TTCGAA	1 cut(s)	125
AvaII	GGWCC	1 cut(s)	598
BbvI	GCAGC	2 cut(s)	259, 778
BccI	CCATC	3 cut(s)	170, 211, 599
BclI	TGATCA	1 cut(s)	187
BfaI	CTAG	2 cut(s)	258, 447
BglII	AGATCT	2 cut(s)	133, 655
BisI	GCNGC	2 cut(s)	248, 767
BlsI	GCNGC	2 cut(s)	249, 768
BmcAI	AGTACT	1 cut(s)	717
Bme18I	GGWCC	1 cut(s)	598
BmgT120I	GGNCC	2 cut(s)	443, 598
BmsI	GCATC	1 cut(s)	76
BplI	GAGNNNNNCTC	2 cut(s)	85, 117
Bpu14I	TTCGAA	1 cut(s)	125
BpuEI	CTTGAG	2 cut(s)	275, 422
BsaJI	CCNNGG	2 cut(s)	271, 475
BsaXI	ACNNNNNCTCC	4 cut(s)	252, 282, 477, 507
Bsc4I	CCNNNNNNNGG	2 cut(s)	277, 607
Bse1I	ACTGG	2 cut(s)	231, 575
Bse3DI	GCAATG	1 cut(s)	348
BseDI	CCNNGG	2 cut(s)	271, 475
BseGI	GGATG	1 cut(s)	544
BseLI	CCNNNNNNNGG	2 cut(s)	277, 607
BseMI	GCAATG	1 cut(s)	348
BseMII	CTCAG	2 cut(s)	67, 522
BseNI	ACTGG	2 cut(s)	231, 575
BseRI	GAGGAG	3 cut(s)	103, 106, 498
BseXI	GCAGC	2 cut(s)	259, 778
Bsh1236I	CGCG	1 cut(s)	201
BshFI	GGCC	2 cut(s)	445, 474
BslI	CCNNNNNNNGG	2 cut(s)	277, 607
BsnI	GGCC	2 cut(s)	445, 474
Bsp119I	TTCGAA	1 cut(s)	125
Bsp143I	GATC	4 cut(s)	133, 167, 187, 655
Bsp19I	CCATGG	1 cut(s)	271
BspACI	CCGC	2 cut(s)	430, 665
BspANI	GGCC	2 cut(s)	445, 474
BspCNI	CTCAG	2 cut(s)	66, 523
BspFNI	CGCG	1 cut(s)	201
BspHI	TCATGA	1 cut(s)	40
BspPI	GGATC	1 cut(s)	175
BspT104I	TTCGAA	1 cut(s)	125
BsrDI	GCAATG	1 cut(s)	348
BsrI	ACTGG	2 cut(s)	231, 575
BssECI	CCNNGG	2 cut(s)	271, 475
BssMI	GATC	4 cut(s)	133, 167, 187, 655
BssT1I	CCWWGG	2 cut(s)	271, 475
Bst6I	CTCTTC	3 cut(s)	416, 606, 624
BstBI	TTCGAA	1 cut(s)	125
BstDEI	CTNAG	3 cut(s)	53, 236, 531
BstDSI	CCRYGG	1 cut(s)	271
BstF5I	GGATG	1 cut(s)	544
BstFNI	CGCG	1 cut(s)	201
BstHHI	GCGC	1 cut(s)	201
BstKTI	GATC	4 cut(s)	136, 170, 190, 658
BstMBI	GATC	4 cut(s)	133, 167, 187, 655
BstNSI	RCATGY	1 cut(s)	574
BstUI	CGCG	1 cut(s)	201
BstV1I	GCAGC	2 cut(s)	259, 778
BstX2I	RGATCY	2 cut(s)	133, 655
BstYI	RGATCY	2 cut(s)	133, 655
BsuRI	GGCC	2 cut(s)	445, 474
BtgI	CCRYGG	1 cut(s)	271
BtsCI	GGATG	1 cut(s)	544
BtsIMutI	CAGTG	2 cut(s)	582, 757
CciI	TCATGA	1 cut(s)	40
CfoI	GCGC	1 cut(s)	201
Cfr13I	GGNCC	2 cut(s)	443, 598
Csp6I	GTAC	2 cut(s)	374, 716
CviAII	CATG	4 cut(s)	41, 272, 571, 602
CviJI	RGCY	8 cut(s)	235, 289, 445, 474, 491, 535, 769, 790
CviKI_1	RGCY	8 cut(s)	235, 289, 445, 474, 491, 535, 769, 790
CviQI	GTAC	2 cut(s)	374, 716
DdeI	CTNAG	3 cut(s)	53, 236, 531
DpnI	GATC	4 cut(s)	135, 169, 189, 657
DpnII	GATC	4 cut(s)	133, 167, 187, 655
DraI	TTTAAA	1 cut(s)	75
Eam1104I	CTCTTC	3 cut(s)	416, 606, 624
EarI	CTCTTC	3 cut(s)	416, 606, 624
EciI	GGCGGA	1 cut(s)	445
Eco130I	CCWWGG	2 cut(s)	271, 475
Eco47I	GGWCC	1 cut(s)	598
EcoO109I	RGGNCCY	1 cut(s)	443
EcoT14I	CCWWGG	2 cut(s)	271, 475
ErhI	CCWWGG	2 cut(s)	271, 475
FaeI	CATG	4 cut(s)	44, 275, 574, 605
FatI	CATG	4 cut(s)	40, 271, 570, 601
FbaI	TGATCA	1 cut(s)	187
Fnu4HI	GCNGC	2 cut(s)	248, 767
FokI	GGATG	1 cut(s)	551
Fsp4HI	GCNGC	2 cut(s)	248, 767
FspBI	CTAG	2 cut(s)	258, 447
GlaI	GCGC	1 cut(s)	200
GluI	GCNGC	2 cut(s)	248, 767
HaeIII	GGCC	2 cut(s)	445, 474
HhaI	GCGC	1 cut(s)	201
Hin1II	CATG	4 cut(s)	44, 275, 574, 605
Hin6I	GCGC	1 cut(s)	199
HinP1I	GCGC	1 cut(s)	199
HincII	GTYRAC	1 cut(s)	16
HindII	GTYRAC	1 cut(s)	16
HindIII	AAGCTT	1 cut(s)	233
HinfI	GANTC	2 cut(s)	140, 349
HphI	GGTGA	3 cut(s)	241, 257, 533
Hpy166II	GTNNAC	1 cut(s)	16
Hpy188I	TCNGA	3 cut(s)	56, 167, 532
Hpy188III	TCNNGA	5 cut(s)	41, 85, 137, 292, 728
Hpy8I	GTNNAC	1 cut(s)	16
HpyAV	CCTTC	4 cut(s)	376, 420, 434, 686
HpyCH4V	TGCA	3 cut(s)	147, 346, 467
HpyF3I	CTNAG	3 cut(s)	53, 236, 531
Hsp92II	CATG	4 cut(s)	44, 275, 574, 605
HspAI	GCGC	1 cut(s)	199
Ksp22I	TGATCA	1 cut(s)	187
Kzo9I	GATC	4 cut(s)	133, 167, 187, 655
LpnPI	CCDG	6 cut(s)	70, 122, 212, 521, 531, 588
Lsp1109I	GCAGC	2 cut(s)	259, 778
LweI	GCATC	1 cut(s)	76
MaeI	CTAG	2 cut(s)	258, 447
MaeIII	GTNAC	2 cut(s)	521, 577
MalI	GATC	4 cut(s)	135, 169, 189, 657
MboI	GATC	4 cut(s)	133, 167, 187, 655
MboII	GAAGA	9 cut(s)	293, 430, 433, 623, 641, 716, 743, 746, 755
MfeI	CAATTG	1 cut(s)	368
MflI	RGATCY	2 cut(s)	133, 655
MluCI	AATT	4 cut(s)	325, 368, 411, 708
MlyI	GAGTC	1 cut(s)	134
MmeI	TCCRAC	1 cut(s)	136
MroXI	GAANNNNTTC	1 cut(s)	48
MseI	TTAA	2 cut(s)	74, 498
MslI	CAYNNNNRTG	3 cut(s)	108, 270, 575
MunI	CAATTG	1 cut(s)	368
MvnI	CGCG	1 cut(s)	201
NcoI	CCATGG	1 cut(s)	271
NdeII	GATC	4 cut(s)	133, 167, 187, 655
NlaIII	CATG	4 cut(s)	44, 275, 574, 605
NmuCI	GTSAC	2 cut(s)	521, 577
NspI	RCATGY	1 cut(s)	574
NspV	TTCGAA	1 cut(s)	125
PagI	TCATGA	1 cut(s)	40
PdmI	GAANNNNTTC	1 cut(s)	48
PfeI	GAWTC	1 cut(s)	349
PflMI	CCANNNNNTGG	1 cut(s)	277
PkrI	GCNGC	2 cut(s)	249, 768
PleI	GAGTC	1 cut(s)	134
PpsI	GAGTC	1 cut(s)	134
PspPI	GGNCC	2 cut(s)	443, 598
PsrI	GAACNNNNNNTAC	2 cut(s)	708, 740
PsuI	RGATCY	2 cut(s)	133, 655
RsaI	GTAC	2 cut(s)	375, 717
RsaNI	GTAC	2 cut(s)	374, 716
RseI	CAYNNNNRTG	3 cut(s)	108, 270, 575
SaqAI	TTAA	2 cut(s)	74, 498
SatI	GCNGC	2 cut(s)	248, 767
Sau3AI	GATC	4 cut(s)	133, 167, 187, 655
Sau96I	GGNCC	2 cut(s)	443, 598
ScaI	AGTACT	1 cut(s)	717
SchI	GAGTC	1 cut(s)	134
SfaNI	GCATC	1 cut(s)	76
SfuI	TTCGAA	1 cut(s)	125
SinI	GGWCC	1 cut(s)	598
SmiMI	CAYNNNNRTG	3 cut(s)	108, 270, 575
SmlI	CTYRAG	2 cut(s)	290, 401
SmoI	CTYRAG	2 cut(s)	290, 401
Sse9I	AATT	4 cut(s)	325, 368, 411, 708
SsiI	CCGC	2 cut(s)	430, 665
SspI	AATATT	1 cut(s)	515
SspMI	CTAG	2 cut(s)	258, 447
StyI	CCWWGG	2 cut(s)	271, 475
TaqI	TCGA	1 cut(s)	125
TasI	AATT	4 cut(s)	325, 368, 411, 708
TatI	WGTACW	1 cut(s)	715
TfiI	GAWTC	1 cut(s)	349
Tru1I	TTAA	2 cut(s)	74, 498
Tru9I	TTAA	2 cut(s)	74, 498
TscAI	CASTG	2 cut(s)	582, 757
TseFI	GTSAC	2 cut(s)	521, 577
TseI	GCWGC	2 cut(s)	247, 766
Tsp45I	GTSAC	2 cut(s)	521, 577
TspDTI	ATGAA	8 cut(s)	57, 104, 320, 338, 600, 654, 705, 717
TspRI	CASTG	2 cut(s)	582, 757
Van91I	CCANNNNNTGG	1 cut(s)	277
VpaK11BI	GGWCC	1 cut(s)	598
XapI	RAATTY	1 cut(s)	325
XceI	RCATGY	1 cut(s)	574
XmnI	GAANNNNTTC	1 cut(s)	48
XspI	CTAG	2 cut(s)	258, 447
ZrmI	AGTACT	1 cut(s)	717

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.