Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0011743

Physical Location & Seq

Genomic Coordinates Forward (+)

1478253 .. 1480784

Gene Structure 2532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G021200.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1068 bp

ATGAATTCTGATCAAGACCCAGTAAGTTTGTCGTCTTCAGGTGCGGCACCTGATCATCCTCTGCCAATGGAGAAACTTTATGACCAAGGCCCTCCACCATTTCTCACCAAAACTTATGACATCGTTGATGACCCAACAACCAATGATATAGTTTCTTGGAGCAGAGACAACAACAGCTTTGTTGTGTTGGATCCCCAGAAATTTTCCATGAGCCTTCTCCCCAGATACTTCAAGCACAACAATTTCTCTAGCTTCGTCAGGCAGCTCAACACCTATGGATTTAGAAAGGTTGATACAGATAGATGGGAGTTCGCTAATCAAGGGTTTCTCAGAGGGCAAAAACATCTTTTGAAGAATATCCGGAGGAGGAAGACATCTTACCATCCTCAGGCTTCACAGAAAGCTTTGGACTCTTGTGTTGAAGTTGGAAAGTTTGGATTGGATGGAGAGATTGACCAGCTGAGGCGTGATAAACAGGTTTTAATGGGGGAACTGGTGAAGCTTAGACAACAGCAGCAAACTACTAGAGTTTACCTCCACGGAATGGAAAATAGACTGAAGAGGACAGAGATGAAACAGCAACATCTGATGAATTTCTTGGCAAGAGCAATGCAGAATCCCAACTTTGTACAACAATTGGCACAACAGAAGGACAAAAGGAATGAACTCGAGGAAGCAATTACTAAGAAGAGAAGGCGGCCTATTGAGCAAGGGCCTAGTAGTTTTGAGGTGGATGAATTAGGCCAAGTTGGAGTAGAAACTTTTGTTAAAGTTGAACCTGAAGAATACGATGACATATCTGATCATTTTGAAAATCCGGACTTGGACACATTTGCTATTGACATGCAGGGTATAACTGGAAGCCAAAATGTTCATGATGAGGAAGAATGTATAGAGAAGGAAGAGAGAAATGAAAGTGGAAGCAAAGACCAGGATAAAAGTTTCTGGCACGAATTGTTGAATGAGAGTATTGATGAAGAAATTGGTATGCTAGGTGTTCAAGAAGAAGACGAGGATGTCGATGTGTTCGTCGAGGAGCTTGTTTACTTGGCCTCCAGTCCCAAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003700 GO:0006355 GO:0008150 GO:0009889 GO:0010468 GO:0010556 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0080090 GO:0140110 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

HSF_DNA-bind

Protein Analysis

356

Amino Acids

41.17

Weight (kDa)

4.9

Isoelectric Point (pI)

54.41

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0011743)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G22830
fragaria_vesca	FvH4_4g01180 FvH4_4g01180
malus_domestica	MD13G1199700.v1.1 MD16G1199800.v1.1
prunus_persica	Prupe.1G021200_v2.0.a1
pyrus_communis	pycom13g17330 pycom16g16830
rosa_chinensis	RchiOBHm_Chr4g0387751
rosa_laevigata	RLG00000010097
rosa_multiflora	Rmu_co8508987.1_g000001 Rmu_sc0008916.1_g000004
rosa_roxburghii	Rroxscaffold_5G00334390
rosa_rugosa	Rorug03G0313000
rosa_samantha	Rh4AG018200 Rh4BG013100 Rh4CG019400 Rh4DG014000
rosa_wichuraiana	Rw4G001190

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	1016
AccB1I	GGYRCC	1 cut(s)	46
AccB7I	CCANNNNNTGG	1 cut(s)	544
AccIII	TCCGGA	2 cut(s)	360, 817
AciI	CCGC	2 cut(s)	44, 697
AclWI	GGATC	2 cut(s)	185, 198
AcsI	RAATTY	3 cut(s)	4, 200, 592
AcuI	CTGAAG	3 cut(s)	21, 578, 801
AfaI	GTAC	1 cut(s)	630
AfiI	CCNNNNNNNGG	2 cut(s)	388, 544
AgsI	TTSAA	7 cut(s)	232, 352, 422, 776, 812, 961, 1001
AjnI	CCWGG	1 cut(s)	930
AluBI	AGCT	7 cut(s)	177, 252, 265, 404, 460, 502, 1039
AluI	AGCT	7 cut(s)	177, 252, 265, 404, 460, 502, 1039
Alw26I	GTCTC	1 cut(s)	159
AlwI	GGATC	2 cut(s)	185, 198
Ama87I	CYCGRG	1 cut(s)	668
Aor13HI	TCCGGA	2 cut(s)	360, 817
AoxI	GGCC	5 cut(s)	88, 698, 713, 742, 1050
ApeKI	GCWGC	2 cut(s)	262, 514
ApoI	RAATTY	3 cut(s)	4, 200, 592
AspS9I	GGNCC	2 cut(s)	89, 713
AsuHPI	GGTGA	2 cut(s)	97, 508
AvaI	CYCGRG	1 cut(s)	668
AxyI	CCTNAGG	1 cut(s)	387
BamHI	GGATCC	1 cut(s)	190
BanI	GGYRCC	1 cut(s)	46
BarI	GAAGNNNNNNTAC	2 cut(s)	362, 394
BbsI	GAAGAC	3 cut(s)	27, 377, 1014
BbvCI	CCTCAGC	1 cut(s)	461
BbvI	GCAGC	2 cut(s)	274, 526
BccI	CCATC	3 cut(s)	297, 390, 437
BciT130I	CCWGG	1 cut(s)	932
BclI	TGATCA	3 cut(s)	10, 52, 802
BcoDI	GTCTC	1 cut(s)	159
BfaI	CTAG	4 cut(s)	249, 525, 717, 992
BisI	GCNGC	4 cut(s)	45, 263, 515, 698
BlsI	GCNGC	4 cut(s)	46, 264, 516, 699
Bme1390I	CCNGG	1 cut(s)	932
BmeT110I	CYCGRG	1 cut(s)	668
BmgT120I	GGNCC	2 cut(s)	89, 713
BmiI	GGNNCC	2 cut(s)	48, 192
BmrFI	CCNGG	1 cut(s)	932
BmrI	ACTGGG	1 cut(s)	14
BmuI	ACTGGG	1 cut(s)	14
BpiI	GAAGAC	3 cut(s)	27, 377, 1014
BplI	GAGNNNNNCTC	2 cut(s)	519, 551
BpmI	CTGGAG	1 cut(s)	1039
Bpu10I	CCTNAGC	1 cut(s)	461
BsaJI	CCNNGG	2 cut(s)	85, 538
BsaWI	WCCGGW	2 cut(s)	360, 817
BsaXI	ACNNNNNCTCC	2 cut(s)	1037, 1067
Bsc4I	CCNNNNNNNGG	2 cut(s)	388, 544
Bse1I	ACTGG	4 cut(s)	20, 498, 862, 1056
Bse21I	CCTNAGG	1 cut(s)	387
Bse3DI	GCAATG	1 cut(s)	615
BseAI	TCCGGA	2 cut(s)	360, 817
BseBI	CCWGG	1 cut(s)	932
BseDI	CCNNGG	2 cut(s)	85, 538
BseGI	GGATG	5 cut(s)	55, 382, 448, 739, 1021
BseLI	CCNNNNNNNGG	2 cut(s)	388, 544
BseMI	GCAATG	1 cut(s)	615
BseMII	CTCAG	3 cut(s)	343, 401, 452
BseNI	ACTGG	4 cut(s)	20, 498, 862, 1056
BseRI	GAGGAG	2 cut(s)	379, 1049
BseXI	GCAGC	2 cut(s)	274, 526
BshFI	GGCC	5 cut(s)	90, 700, 715, 744, 1052
BshNI	GGYRCC	1 cut(s)	46
BsiHKCI	CYCGRG	1 cut(s)	668
BsiSI	CCGG	2 cut(s)	361, 818
BslFI	GGGAC	1 cut(s)	1044
BslI	CCNNNNNNNGG	2 cut(s)	388, 544
BsmAI	GTCTC	1 cut(s)	159
BsmFI	GGGAC	1 cut(s)	1044
BsnI	GGCC	5 cut(s)	90, 700, 715, 744, 1052
BsoBI	CYCGRG	1 cut(s)	668
Bsp13I	TCCGGA	2 cut(s)	360, 817
Bsp1407I	TGTACA	1 cut(s)	628
Bsp143I	GATC	4 cut(s)	10, 52, 190, 802
BspACI	CCGC	2 cut(s)	44, 697
BspANI	GGCC	5 cut(s)	90, 700, 715, 744, 1052
BspCNI	CTCAG	3 cut(s)	342, 400, 453
BspEI	TCCGGA	2 cut(s)	360, 817
BspHI	TCATGA	1 cut(s)	874
BspLI	GGNNCC	2 cut(s)	48, 192
BspPI	GGATC	2 cut(s)	185, 198
BspT107I	GGYRCC	1 cut(s)	46
BsrDI	GCAATG	1 cut(s)	615
BsrGI	TGTACA	1 cut(s)	628
BsrI	ACTGG	4 cut(s)	20, 498, 862, 1056
BssECI	CCNNGG	2 cut(s)	85, 538
BssMI	GATC	4 cut(s)	10, 52, 190, 802
BssT1I	CCWWGG	1 cut(s)	85
Bst2UI	CCWGG	1 cut(s)	932
Bst6I	CTCTTC	3 cut(s)	554, 683, 897
BstAUI	TGTACA	1 cut(s)	628
BstDEI	CTNAG	5 cut(s)	329, 387, 461, 503, 684
BstDSI	CCRYGG	1 cut(s)	538
BstF5I	GGATG	5 cut(s)	55, 382, 448, 739, 1021
BstKTI	GATC	4 cut(s)	13, 55, 193, 805
BstMAI	GTCTC	1 cut(s)	159
BstMBI	GATC	4 cut(s)	10, 52, 190, 802
BstMWI	GCNNNNNNNGC	1 cut(s)	706
BstNI	CCWGG	1 cut(s)	932
BstNSI	RCATGY	1 cut(s)	847
BstSCI	CCNGG	1 cut(s)	930
BstV1I	GCAGC	2 cut(s)	274, 526
BstV2I	GAAGAC	3 cut(s)	27, 377, 1014
BstX2I	RGATCY	1 cut(s)	190
BstYI	RGATCY	1 cut(s)	190
Bsu36I	CCTNAGG	1 cut(s)	387
BsuRI	GGCC	5 cut(s)	90, 700, 715, 744, 1052
BtgI	CCRYGG	1 cut(s)	538
BtsCI	GGATG	5 cut(s)	55, 382, 448, 739, 1021
CciI	TCATGA	1 cut(s)	874
Cfr13I	GGNCC	2 cut(s)	89, 713
Csp6I	GTAC	1 cut(s)	629
CviAII	CATG	3 cut(s)	208, 844, 875
CviQI	GTAC	1 cut(s)	629
DdeI	CTNAG	5 cut(s)	329, 387, 461, 503, 684
DpnI	GATC	4 cut(s)	12, 54, 192, 804
DpnII	GATC	4 cut(s)	10, 52, 190, 802
DrdI	GACNNNNNNGTC	1 cut(s)	1016
DseDI	GACNNNNNNGTC	1 cut(s)	1016
Eam1104I	CTCTTC	3 cut(s)	554, 683, 897
EarI	CTCTTC	3 cut(s)	554, 683, 897
Eco130I	CCWWGG	1 cut(s)	85
Eco57I	CTGAAG	3 cut(s)	21, 578, 801
Eco81I	CCTNAGG	1 cut(s)	387
Eco88I	CYCGRG	1 cut(s)	668
EcoO109I	RGGNCCY	2 cut(s)	89, 713
EcoRI	GAATTC	1 cut(s)	4
EcoRII	CCWGG	1 cut(s)	930
EcoT14I	CCWWGG	1 cut(s)	85
ErhI	CCWWGG	1 cut(s)	85
FaeI	CATG	3 cut(s)	211, 847, 878
FaqI	GGGAC	1 cut(s)	1044
FatI	CATG	3 cut(s)	207, 843, 874
FbaI	TGATCA	3 cut(s)	10, 52, 802
Fnu4HI	GCNGC	4 cut(s)	45, 263, 515, 698
FokI	GGATG	5 cut(s)	42, 369, 455, 746, 1028
Fsp4HI	GCNGC	4 cut(s)	45, 263, 515, 698
FspBI	CTAG	4 cut(s)	249, 525, 717, 992
GluI	GCNGC	4 cut(s)	45, 263, 515, 698
GsuI	CTGGAG	1 cut(s)	1039
HaeIII	GGCC	5 cut(s)	90, 700, 715, 744, 1052
HapII	CCGG	2 cut(s)	361, 818
Hin1II	CATG	3 cut(s)	211, 847, 878
HindIII	AAGCTT	2 cut(s)	402, 500
HinfI	GANTC	2 cut(s)	410, 616
HpaII	CCGG	2 cut(s)	361, 818
HphI	GGTGA	2 cut(s)	97, 508
Hpy166II	GTNNAC	2 cut(s)	532, 1045
Hpy188I	TCNGA	4 cut(s)	10, 332, 588, 802
Hpy188III	TCNNGA	5 cut(s)	14, 361, 818, 875, 1001
Hpy8I	GTNNAC	2 cut(s)	532, 1045
Hpy99I	CGWCG	1 cut(s)	1034
HpyAV	CCTTC	4 cut(s)	224, 643, 687, 892
HpyCH4V	TGCA	2 cut(s)	613, 847
HpyF10VI	GCNNNNNNNGC	1 cut(s)	706
HpyF3I	CTNAG	5 cut(s)	329, 387, 461, 503, 684
Hsp92II	CATG	3 cut(s)	211, 847, 878
Kpn2I	TCCGGA	2 cut(s)	360, 817
Ksp22I	TGATCA	3 cut(s)	10, 52, 802
Kzo9I	GATC	4 cut(s)	10, 52, 190, 802
LmnI	GCTCC	2 cut(s)	159, 1036
Lsp1109I	GCAGC	2 cut(s)	274, 526
MaeI	CTAG	4 cut(s)	249, 525, 717, 992
MalI	GATC	4 cut(s)	12, 54, 192, 804
MboI	GATC	4 cut(s)	10, 52, 190, 802
MfeI	CAATTG	1 cut(s)	635
MflI	RGATCY	1 cut(s)	190
MluCI	AATT	9 cut(s)	4, 200, 241, 592, 635, 678, 737, 953, 981
MlyI	GAGTC	1 cut(s)	404
MmeI	TCCRAC	3 cut(s)	168, 406, 730
MroI	TCCGGA	2 cut(s)	360, 817
MseI	TTAA	2 cut(s)	482, 768
MspA1I	CMGCKG	1 cut(s)	460
MspI	CCGG	2 cut(s)	361, 818
MspR9I	CCNGG	1 cut(s)	932
MunI	CAATTG	1 cut(s)	635
MvaI	CCWGG	1 cut(s)	932
MwoI	GCNNNNNNNGC	1 cut(s)	706
NdeII	GATC	4 cut(s)	10, 52, 190, 802
NlaIII	CATG	3 cut(s)	211, 847, 878
NlaIV	GGNNCC	2 cut(s)	48, 192
NspI	RCATGY	1 cut(s)	847
PaeR7I	CTCGAG	1 cut(s)	668
PagI	TCATGA	1 cut(s)	874
PcsI	WCGNNNNNNNCGW	2 cut(s)	1017, 1026
PfeI	GAWTC	1 cut(s)	616
PflMI	CCANNNNNTGG	1 cut(s)	544
PkrI	GCNGC	4 cut(s)	46, 264, 516, 699
PleI	GAGTC	1 cut(s)	404
PpsI	GAGTC	1 cut(s)	404
Psp6I	CCWGG	1 cut(s)	930
PspGI	CCWGG	1 cut(s)	930
PspN4I	GGNNCC	2 cut(s)	48, 192
PspPI	GGNCC	2 cut(s)	89, 713
PspXI	VCTCGAGB	1 cut(s)	668
PsuI	RGATCY	1 cut(s)	190
PvuII	CAGCTG	1 cut(s)	460
RsaI	GTAC	1 cut(s)	630
RsaNI	GTAC	1 cut(s)	629
SaqAI	TTAA	2 cut(s)	482, 768
SatI	GCNGC	4 cut(s)	45, 263, 515, 698
Sau3AI	GATC	4 cut(s)	10, 52, 190, 802
Sau96I	GGNCC	2 cut(s)	89, 713
SchI	GAGTC	1 cut(s)	404
ScrFI	CCNGG	1 cut(s)	932
Sfr274I	CTCGAG	1 cut(s)	668
SlaI	CTCGAG	1 cut(s)	668
SmlI	CTYRAG	1 cut(s)	668
SmoI	CTYRAG	1 cut(s)	668
Sse9I	AATT	9 cut(s)	4, 200, 241, 592, 635, 678, 737, 953, 981
SsiI	CCGC	2 cut(s)	44, 697
SspMI	CTAG	4 cut(s)	249, 525, 717, 992
StyD4I	CCNGG	1 cut(s)	930
StyI	CCWWGG	1 cut(s)	85
TaqI	TCGA	3 cut(s)	669, 1020, 1032
TasI	AATT	9 cut(s)	4, 200, 241, 592, 635, 678, 737, 953, 981
TatI	WGTACW	1 cut(s)	628
TauI	GCSGC	2 cut(s)	47, 700
TfiI	GAWTC	1 cut(s)	616
Tru1I	TTAA	2 cut(s)	482, 768
Tru9I	TTAA	2 cut(s)	482, 768
TseI	GCWGC	2 cut(s)	262, 514
TspDTI	ATGAA	8 cut(s)	17, 587, 605, 678, 750, 863, 927, 990
TspGWI	ACGGA	1 cut(s)	555
Van91I	CCANNNNNTGG	1 cut(s)	544
XapI	RAATTY	3 cut(s)	4, 200, 592
XceI	RCATGY	1 cut(s)	847
XhoI	CTCGAG	1 cut(s)	668
XspI	CTAG	4 cut(s)	249, 525, 717, 992

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.