Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0008351

Physical Location & Seq

Genomic Coordinates Reverse (-)

8214289 .. 8217206

Gene Structure 2918 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G23090.4

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1017 bp

ATGGATATCTGTATGGACAAGGAGCCAGATGGTGTGGTGGTCTATGCGAACGGTGATTCGTGTAATCCAAACCAAGAAAATGTTTCTGAGCCTCTCTTAGATTCAGTATCACGCGATGATGCTAATGTACATACAGAGCTTCGATATGGGGAAGAGAACATCGAAGTAAACGAATATGATGTTAAAGAGTGTACTAGTGAGATCCCCGTTGGTAAGCCGATAGGAGATGATTTTGAGTCTAAAGATGTCACTAAGTCAAGTTTACATGCAAAGCATGCTTCAAAATCAGGTAGAGGGAATAACAAAACAAGGAACACCGTTCCACAACCGTTTTCTTTAGCAACTGAGAAACGTGCTTCATCTACACGTTCGTTTACTAGTGAATCTCTCGAATCAGCTGGCTTGAAAAAGTTTCCGGATGGACATAGTAAAGTACAAAGTCAGGCAACAAAGGTACCTAGGAAACCATTGCAGCCAAAAAACAAGAAGCTTTCAGATGAGGAAGATTCTTGCTCTGTTGCTTCATATGCCACGTCGGGTGCAAAGTCTGCTAAATCAAGAACTGTTGTCACCGCAGCTCCTTCGTTCCGATCCACTGAGCGTGCCGAGAAGAGGAAGGAGTTCTATACAAAACTGGAGGAGAAACACCAAGCCATGGAGGCCGAGAAAACGCAAAGTGAAGCAAGGAACAAGGAAGCAACCGAAGCAGCTTTAAGACAATTAAGAAAAAGTTTGAGGTTTAAAGCAAACCCAATGCCAAAATTTTATCATGAAGGGCCTCCCCCAAAGGTTGAACTTAAGAAGCCTCTTCCAACTCGAGCAAAGTCGCCAAAACTAGGGCGGAGGAACCCGAAAGAAGGAAACAGAGCAAAAGGAGCTTCGAGGCGGCATGAAACTCGAAAGACTCTAGTGATCTCTAAAGAAGACCATGATGATGAAACCACACGGAATGCTGACCAGATAAACCATAAAGAAATGAACCGAAATTTGGAACCAGAGACTGCTTTTGCCTGCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000902 GO:0000904 GO:0001558 GO:0001578 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0007163 GO:0007275 GO:0008017 GO:0008092 GO:0008150 GO:0009653 GO:0009825 GO:0009826 GO:0009888 GO:0009987 GO:0010015 GO:0010026 GO:0010031 GO:0010090 GO:0010091 GO:0015630 GO:0015631 GO:0016043 GO:0016049 GO:0022603 GO:0022604 GO:0022622 GO:0030154 GO:0030308 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032501 GO:0032502 GO:0032989 GO:0040007 GO:0040008 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045926 GO:0048364 GO:0048468 GO:0048519 GO:0048523 GO:0048589 GO:0048638 GO:0048640 GO:0048731 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0050879 GO:0051093 GO:0051128 GO:0051129 GO:0051510 GO:0051511 GO:0055028 GO:0060560 GO:0065007 GO:0071840 GO:0071944 GO:0090558 GO:0090626 GO:0097435 GO:0099080 GO:0099081 GO:0099402 GO:0099512 GO:0099513 GO:0099568 GO:1905392

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

338

Amino Acids

37.78

Weight (kDa)

9.12

Isoelectric Point (pI)

61.54

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPX2	PF06886	231 - 300	7.5e-25	Targeting protein for Xklp2 (TPX2) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23090 AT3G23090 AT3G23090 AT3G23090 AT3G23090
fragaria_vesca	FvH4_4g02740 FvH4_4g02740 FvH4_4g02740
malus_domestica	MD13G1207700.v1.1 MD16G1209200.v1.1
prunus_persica	Prupe.1G031100_v2.0.a1 Prupe.1G031100_v2.0.a1
pyrus_communis	pycom13g17990 pycom16g17650
rosa_chinensis	RchiOBHm_Chr4g0390601
rosa_laevigata	RLG00000009915
rosa_multiflora	Rmu_sc0001380.1_g000010
rosa_roxburghii	Rroxscaffold_5G00336540
rosa_rugosa	Rorug03G0331100
rosa_samantha	Rh4AG032600 Rh4BG026700 Rh4CG036400 Rh4DG029400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	454
AccB1I	GGYRCC	1 cut(s)	454
AccB7I	CCANNNNNTGG	1 cut(s)	655
AccII	CGCG	1 cut(s)	114
AccIII	TCCGGA	1 cut(s)	415
AciI	CCGC	3 cut(s)	573, 841, 886
AclWI	GGATC	2 cut(s)	196, 585
AcsI	RAATTY	2 cut(s)	761, 985
AfaI	GTAC	4 cut(s)	129, 193, 435, 456
AfiI	CCNNNNNNNGG	5 cut(s)	612, 655, 836, 857, 988
AflII	CTTAAG	1 cut(s)	797
AflIII	ACRYGT	1 cut(s)	365
AgsI	TTSAA	3 cut(s)	282, 406, 794
AhlI	ACTAGT	2 cut(s)	194, 377
AjiI	CACGTC	1 cut(s)	534
AjuI	GAANNNNNNNTTGG	2 cut(s)	971, 1003
AluBI	AGCT	6 cut(s)	139, 398, 490, 578, 710, 878
AluI	AGCT	6 cut(s)	139, 398, 490, 578, 710, 878
Alw26I	GTCTC	1 cut(s)	992
AlwI	GGATC	2 cut(s)	196, 585
AlwNI	CAGNNNCTG	1 cut(s)	1001
Ama87I	CYCGRG	1 cut(s)	816
Aor13HI	TCCGGA	1 cut(s)	415
AoxI	GGCC	2 cut(s)	660, 776
ApeKI	GCWGC	3 cut(s)	472, 575, 707
ApoI	RAATTY	2 cut(s)	761, 985
Asp700I	GAANNNNTTC	1 cut(s)	620
Asp718I	GGTACC	1 cut(s)	454
AspA2I	CCTAGG	1 cut(s)	458
AspS9I	GGNCC	1 cut(s)	776
AsuHPI	GGTGA	2 cut(s)	65, 562
AvaI	CYCGRG	1 cut(s)	816
AvrII	CCTAGG	1 cut(s)	458
BaeI	ACNNNNGTAYC	2 cut(s)	438, 471
BanI	GGYRCC	1 cut(s)	454
BbsI	GAAGAC	1 cut(s)	930
BbvI	GCAGC	3 cut(s)	484, 587, 719
BccI	CCATC	2 cut(s)	23, 413
BcgI	CGANNNNNNTGC	4 cut(s)	564, 598, 878, 912
BcoDI	GTCTC	1 cut(s)	992
BcuI	ACTAGT	2 cut(s)	194, 377
BfaI	CTAG	5 cut(s)	195, 378, 459, 836, 908
BfrI	CTTAAG	1 cut(s)	797
BglI	GCCNNNNNGGC	1 cut(s)	659
BisI	GCNGC	4 cut(s)	473, 576, 708, 887
BlnI	CCTAGG	1 cut(s)	458
BlsI	GCNGC	4 cut(s)	474, 577, 709, 888
BmeT110I	CYCGRG	1 cut(s)	816
BmgBI	CACGTC	1 cut(s)	534
BmgT120I	GGNCC	1 cut(s)	776
BmiI	GGNNCC	4 cut(s)	24, 456, 848, 993
BmsI	GCATC	1 cut(s)	109
BpiI	GAAGAC	1 cut(s)	930
BpmI	CTGGAG	1 cut(s)	656
BsaJI	CCNNGG	2 cut(s)	458, 654
BsaWI	WCCGGW	1 cut(s)	415
BsaXI	ACNNNNNCTCC	2 cut(s)	562, 592
Bsc4I	CCNNNNNNNGG	5 cut(s)	612, 655, 836, 857, 988
Bse1I	ACTGG	1 cut(s)	639
Bse3DI	GCAATG	1 cut(s)	467
BseAI	TCCGGA	1 cut(s)	415
BseDI	CCNNGG	2 cut(s)	458, 654
BseGI	GGATG	1 cut(s)	424
BseLI	CCNNNNNNNGG	5 cut(s)	612, 655, 836, 857, 988
BseMI	GCAATG	1 cut(s)	467
BseMII	CTCAG	3 cut(s)	78, 336, 588
BseNI	ACTGG	1 cut(s)	639
BseRI	GAGGAG	1 cut(s)	653
BseXI	GCAGC	3 cut(s)	484, 587, 719
Bsh1236I	CGCG	1 cut(s)	114
BshFI	GGCC	2 cut(s)	662, 778
BshNI	GGYRCC	1 cut(s)	454
BsiHKCI	CYCGRG	1 cut(s)	816
BsiSI	CCGG	1 cut(s)	416
BslI	CCNNNNNNNGG	5 cut(s)	612, 655, 836, 857, 988
BsmAI	GTCTC	1 cut(s)	992
BsmI	GAATGC	1 cut(s)	955
BsnI	GGCC	2 cut(s)	662, 778
BsoBI	CYCGRG	1 cut(s)	816
Bsp13I	TCCGGA	1 cut(s)	415
Bsp1407I	TGTACA	1 cut(s)	127
Bsp143I	GATC	3 cut(s)	201, 590, 912
Bsp19I	CCATGG	1 cut(s)	654
BspACI	CCGC	3 cut(s)	573, 841, 886
BspANI	GGCC	2 cut(s)	662, 778
BspCNI	CTCAG	3 cut(s)	79, 337, 589
BspEI	TCCGGA	1 cut(s)	415
BspFNI	CGCG	1 cut(s)	114
BspHI	TCATGA	1 cut(s)	769
BspLI	GGNNCC	4 cut(s)	24, 456, 848, 993
BspPI	GGATC	2 cut(s)	196, 585
BspT107I	GGYRCC	1 cut(s)	454
BspTI	CTTAAG	1 cut(s)	797
BsrDI	GCAATG	1 cut(s)	467
BsrGI	TGTACA	1 cut(s)	127
BsrI	ACTGG	1 cut(s)	639
BssECI	CCNNGG	2 cut(s)	458, 654
BssMI	GATC	3 cut(s)	201, 590, 912
BssT1I	CCWWGG	2 cut(s)	458, 654
Bst4CI	ACNGT	4 cut(s)	53, 319, 330, 565
Bst6I	CTCTTC	3 cut(s)	147, 605, 813
BstAFI	CTTAAG	1 cut(s)	797
BstAPI	GCANNNNNTGC	2 cut(s)	275, 548
BstAUI	TGTACA	1 cut(s)	127
BstC8I	GCNNGC	4 cut(s)	276, 400, 603, 1012
BstDEI	CTNAG	5 cut(s)	87, 97, 252, 345, 597
BstDSI	CCRYGG	1 cut(s)	654
BstF5I	GGATG	1 cut(s)	424
BstFNI	CGCG	1 cut(s)	114
BstKTI	GATC	3 cut(s)	204, 593, 915
BstMAI	GTCTC	1 cut(s)	992
BstMBI	GATC	3 cut(s)	201, 590, 912
BstMWI	GCNNNNNNNGC	6 cut(s)	275, 527, 548, 659, 704, 875
BstNSI	RCATGY	2 cut(s)	269, 278
BstUI	CGCG	1 cut(s)	114
BstV1I	GCAGC	3 cut(s)	484, 587, 719
BstV2I	GAAGAC	1 cut(s)	930
BstX2I	RGATCY	1 cut(s)	201
BstYI	RGATCY	1 cut(s)	201
BsuRI	GGCC	2 cut(s)	662, 778
BtgI	CCRYGG	1 cut(s)	654
BtgZI	GCGATG	1 cut(s)	129
BtrI	CACGTC	1 cut(s)	534
BtsCI	GGATG	1 cut(s)	424
BtsIMutI	CAGTG	1 cut(s)	594
Cac8I	GCNNGC	4 cut(s)	276, 400, 603, 1012
CaiI	CAGNNNCTG	1 cut(s)	1001
CciI	TCATGA	1 cut(s)	769
Cfr13I	GGNCC	1 cut(s)	776
Csp6I	GTAC	4 cut(s)	128, 192, 434, 455
CviAII	CATG	6 cut(s)	266, 275, 655, 770, 890, 929
CviQI	GTAC	4 cut(s)	128, 192, 434, 455
DdeI	CTNAG	5 cut(s)	87, 97, 252, 345, 597
DpnI	GATC	3 cut(s)	203, 592, 914
DpnII	GATC	3 cut(s)	201, 590, 912
DraI	TTTAAA	1 cut(s)	742
Eam1104I	CTCTTC	3 cut(s)	147, 605, 813
EarI	CTCTTC	3 cut(s)	147, 605, 813
EciI	GGCGGA	1 cut(s)	856
Eco130I	CCWWGG	2 cut(s)	458, 654
Eco32I	GATATC	1 cut(s)	7
Eco88I	CYCGRG	1 cut(s)	816
EcoO109I	RGGNCCY	1 cut(s)	776
EcoRV	GATATC	1 cut(s)	7
EcoT14I	CCWWGG	2 cut(s)	458, 654
ErhI	CCWWGG	2 cut(s)	458, 654
FaeI	CATG	6 cut(s)	269, 278, 658, 773, 893, 932
FatI	CATG	6 cut(s)	265, 274, 654, 769, 889, 928
FauNDI	CATATG	1 cut(s)	526
Fnu4HI	GCNGC	4 cut(s)	473, 576, 708, 887
FokI	GGATG	1 cut(s)	431
Fsp4HI	GCNGC	4 cut(s)	473, 576, 708, 887
FspBI	CTAG	5 cut(s)	195, 378, 459, 836, 908
GluI	GCNGC	4 cut(s)	473, 576, 708, 887
GsuI	CTGGAG	1 cut(s)	656
HaeIII	GGCC	2 cut(s)	662, 778
HapII	CCGG	1 cut(s)	416
Hin1II	CATG	6 cut(s)	269, 278, 658, 773, 893, 932
HindIII	AAGCTT	1 cut(s)	488
HinfI	GANTC	7 cut(s)	56, 101, 236, 383, 392, 506, 904
HpaII	CCGG	1 cut(s)	416
HphI	GGTGA	2 cut(s)	65, 562
Hpy166II	GTNNAC	4 cut(s)	169, 192, 263, 375
Hpy188I	TCNGA	3 cut(s)	88, 496, 590
Hpy188III	TCNNGA	4 cut(s)	389, 416, 558, 770
Hpy8I	GTNNAC	4 cut(s)	169, 192, 263, 375
Hpy99I	CGWCG	1 cut(s)	538
HpyAV	CCTTC	4 cut(s)	591, 610, 767, 851
HpyCH4III	ACNGT	4 cut(s)	53, 319, 330, 565
HpyCH4IV	ACGT	3 cut(s)	352, 367, 533
HpyCH4V	TGCA	3 cut(s)	269, 472, 542
HpyF10VI	GCNNNNNNNGC	6 cut(s)	275, 527, 548, 659, 704, 875
HpyF3I	CTNAG	5 cut(s)	87, 97, 252, 345, 597
HpySE526I	ACGT	3 cut(s)	352, 367, 533
Hsp92II	CATG	6 cut(s)	269, 278, 658, 773, 893, 932
Kpn2I	TCCGGA	1 cut(s)	415
KpnI	GGTACC	1 cut(s)	458
Kzo9I	GATC	3 cut(s)	201, 590, 912
LmnI	GCTCC	3 cut(s)	22, 583, 875
LpnPI	CCDG	8 cut(s)	39, 273, 384, 428, 429, 620, 971, 1008
Lsp1109I	GCAGC	3 cut(s)	484, 587, 719
LweI	GCATC	1 cut(s)	109
MaeI	CTAG	5 cut(s)	195, 378, 459, 836, 908
MaeII	ACGT	3 cut(s)	352, 367, 533
MaeIII	GTNAC	2 cut(s)	247, 568
MalI	GATC	3 cut(s)	203, 592, 914
MboI	GATC	3 cut(s)	201, 590, 912
MboII	GAAGA	5 cut(s)	164, 515, 622, 800, 935
MflI	RGATCY	1 cut(s)	201
MluCI	AATT	3 cut(s)	719, 761, 985
MlyI	GAGTC	2 cut(s)	245, 898
MmeI	TCCRAC	1 cut(s)	836
MroI	TCCGGA	1 cut(s)	415
MroXI	GAANNNNTTC	1 cut(s)	620
MseI	TTAA	5 cut(s)	183, 713, 722, 741, 798
MslI	CAYNNNNRTG	1 cut(s)	933
MspA1I	CMGCKG	1 cut(s)	398
MspCI	CTTAAG	1 cut(s)	797
MspI	CCGG	1 cut(s)	416
Mva1269I	GAATGC	1 cut(s)	955
MvnI	CGCG	1 cut(s)	114
MwoI	GCNNNNNNNGC	6 cut(s)	275, 527, 548, 659, 704, 875
NcoI	CCATGG	1 cut(s)	654
NdeI	CATATG	1 cut(s)	526
NdeII	GATC	3 cut(s)	201, 590, 912
NlaIII	CATG	6 cut(s)	269, 278, 658, 773, 893, 932
NlaIV	GGNNCC	4 cut(s)	24, 456, 848, 993
NmeAIII	GCCGAG	2 cut(s)	631, 688
NmuCI	GTSAC	2 cut(s)	247, 568
NspI	RCATGY	2 cut(s)	269, 278
PaeI	GCATGC	1 cut(s)	278
PaeR7I	CTCGAG	1 cut(s)	816
PagI	TCATGA	1 cut(s)	769
PcsI	WCGNNNNNNNCGW	1 cut(s)	168
PctI	GAATGC	1 cut(s)	955
PdmI	GAANNNNTTC	1 cut(s)	620
PfeI	GAWTC	5 cut(s)	56, 101, 383, 392, 506
PflMI	CCANNNNNTGG	1 cut(s)	655
PkrI	GCNGC	4 cut(s)	474, 577, 709, 888
PleI	GAGTC	2 cut(s)	244, 898
PpsI	GAGTC	2 cut(s)	244, 898
PspN4I	GGNNCC	4 cut(s)	24, 456, 848, 993
PspPI	GGNCC	1 cut(s)	776
PspXI	VCTCGAGB	1 cut(s)	816
PstNI	CAGNNNCTG	1 cut(s)	1001
PsuI	RGATCY	1 cut(s)	201
PvuII	CAGCTG	1 cut(s)	398
RsaI	GTAC	4 cut(s)	129, 193, 435, 456
RsaNI	GTAC	4 cut(s)	128, 192, 434, 455
RseI	CAYNNNNRTG	1 cut(s)	933
SaqAI	TTAA	5 cut(s)	183, 713, 722, 741, 798
SatI	GCNGC	4 cut(s)	473, 576, 708, 887
Sau3AI	GATC	3 cut(s)	201, 590, 912
Sau96I	GGNCC	1 cut(s)	776
SchI	GAGTC	2 cut(s)	245, 898
SfaNI	GCATC	1 cut(s)	109
Sfr274I	CTCGAG	1 cut(s)	816
SlaI	CTCGAG	1 cut(s)	816
SmiMI	CAYNNNNRTG	1 cut(s)	933
SmlI	CTYRAG	2 cut(s)	797, 816
SmoI	CTYRAG	2 cut(s)	797, 816
SpeI	ACTAGT	2 cut(s)	194, 377
SphI	GCATGC	1 cut(s)	278
Sse9I	AATT	3 cut(s)	719, 761, 985
SsiI	CCGC	3 cut(s)	573, 841, 886
SspMI	CTAG	5 cut(s)	195, 378, 459, 836, 908
StyI	CCWWGG	2 cut(s)	458, 654
TaaI	ACNGT	4 cut(s)	53, 319, 330, 565
TaiI	ACGT	3 cut(s)	355, 370, 536
TaqI	TCGA	6 cut(s)	142, 162, 390, 817, 881, 898
TasI	AATT	3 cut(s)	719, 761, 985
TatI	WGTACW	3 cut(s)	127, 191, 433
TauI	GCSGC	1 cut(s)	889
TfiI	GAWTC	5 cut(s)	56, 101, 383, 392, 506
Tru1I	TTAA	5 cut(s)	183, 713, 722, 741, 798
Tru9I	TTAA	5 cut(s)	183, 713, 722, 741, 798
TscAI	CASTG	1 cut(s)	601
TseFI	GTSAC	2 cut(s)	247, 568
TseI	GCWGC	3 cut(s)	472, 575, 707
Tsp45I	GTSAC	2 cut(s)	247, 568
TspDTI	ATGAA	6 cut(s)	348, 513, 786, 906, 951, 992
TspGWI	ACGGA	1 cut(s)	961
TspRI	CASTG	1 cut(s)	601
Van91I	CCANNNNNTGG	1 cut(s)	655
Vha464I	CTTAAG	1 cut(s)	797
XapI	RAATTY	2 cut(s)	761, 985
XceI	RCATGY	2 cut(s)	269, 278
XhoI	CTCGAG	1 cut(s)	816
XmaJI	CCTAGG	1 cut(s)	458
XmnI	GAANNNNTTC	1 cut(s)	620
XspI	CTAG	5 cut(s)	195, 378, 459, 836, 908

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.