Rroxscaffold_5G00336540

Targeting protein for Xklp2 (TPX2)

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
4363323 .. 4367418
4096 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00336540.1

Sequence Viewer

Length: 1200 bp
ATGGCAATAGAAGTTACAGATATTTGCATGGACAAGGAGTCAGATGGTGCCATAATTTATTCAGATGCTTCTCATGACTCAAATCGTGAAAGAATTCCCAATGATCATGCAATTTCAGAGTCATATGAGGAGACCCAAAATTTGCAAGAGAGCACTGAAGTAAAGGATTATGAAGTAAAGGAGTGCACTACAGAAACCTCTGTTGACATTTCCCAATTGAGTCAGATTGAAAATGCTATCGAAGATCAGAATGTGGTAAGCTTGAAGCCTGATAATGGCAAGCCTGTGGAGAAGGTTCAGCGGGATTCTGAGAAAACAAAGGATGGAAAAAAGTCACGCCCATCTGTTAATCAAGCATCAAAACCTTCTGCGGGAAATGGTAGAACAAAACACACTGTTCCACGGCCATTTACCTTAGCAACTGAAAAGCGTGCTTCATATGGAGCTCGTCCAGTCAGTGCTGTACTTGATTGCGGTAATGGCATCAATAAATCACCCAACTTGAGCAATCCGCGACATCTTAATACCACAAAGCATACCCAGCCAAGATCACCTTTGGTACCAAGGAAGTCATTTCAACTTGATGGGAAGAAGCATCCTGATGAGGAAGATACCTGTTCTGTTGCTTCCTCCACAGTAGCATCTGTACGAACTATTAGGTCCAGGACAACAGTGGCATCAGCTCCGACGTTTAGAAGTAATGAACGTGCAGAGAAAAGGAAGGAGTTTTATTCAAAATTAGAGGAGAAACATCACGCACTTGAGGCTGAGAAAAATCAAAGTGAAGCAAGGACCAAGGAAGAGAAAGAGGCAGCTGTTAAGCAATTGAGAAAGAGTTTAATGTTCAAGGCAAACCCGATGCCAAGTTTCTACCATGATGGACCTCCAGCTAAGACTGAGCTCAAAAAGCTACCCCCAACTCGTGCAAAGTCACCAAAGCTTGGCCGAAGGAAGAGCTGCAGTGATACAGTCAAATTATCCCAAGGAGACGGAATAAAAGGAGCTGCTGGTCCGGGAAATCGGCACAGTATGGGTAGCTACAAAAAGGATGCTTCTGTGCAACGTAAGGATCAGATTAACATTCAAAATGGCAATGCTGATTGCAAGTTTGTTGAAGAGCCTAAGAAAGTGAATGAGATAAGCAAGTTCATTCCAGCCAACCTAAATGAACAGCATATGGACATATTTGTTGAATCCTGA

Protein Analysis

399

Amino Acids

44.34

Weight (kDa)

9.03

Isoelectric Point (pI)

47.86

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
TPX2 PF06886 230 - 299 5.6e-26 Targeting protein for Xklp2 (TPX2) domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 559
AccB1I GGYRCC 2 cut(s) 47, 559
AccB7I CCANNNNNTGG 1 cut(s) 941
AccII CGCG 1 cut(s) 514
AciI CCGC 4 cut(s) 301, 371, 474, 512
AclWI GGATC 1 cut(s) 1077
AcoI YGGCCR 2 cut(s) 404, 943
AcsI RAATTY 2 cut(s) 93, 139
AcuI CTGAAG 1 cut(s) 177
AfaI GTAC 3 cut(s) 465, 561, 648
AfiI CCNNNNNNNGG 3 cut(s) 275, 371, 941
AgsI TTSAA 8 cut(s) 230, 265, 578, 735, 847, 1085, 1115, 1193
AhdI GACNNNNNGTC 1 cut(s) 37
AjnI CCWGG 1 cut(s) 662
Alw21I GWGCWC 4 cut(s) 155, 188, 448, 903
Alw26I GTCTC 2 cut(s) 125, 981
Alw44I GTGCAC 1 cut(s) 184
AlwI GGATC 1 cut(s) 1077
AoxI GGCC 2 cut(s) 404, 943
ApaLI GTGCAC 1 cut(s) 184
ApeKI GCWGC 3 cut(s) 812, 957, 1004
ApoI RAATTY 2 cut(s) 93, 139
ArsI GACNNNNNNTTYG 2 cut(s) 124, 156
Asp700I GAANNNNTTC 1 cut(s) 93
Asp718I GGTACC 1 cut(s) 559
AspS9I GGNCC 4 cut(s) 660, 792, 881, 1010
AsuC2I CCSGG 1 cut(s) 1014
AsuHPI GGTGA 3 cut(s) 486, 543, 924
AvaII GGWCC 4 cut(s) 660, 792, 881, 1010
BaeGI GKGCMC 1 cut(s) 188
BanI GGYRCC 2 cut(s) 47, 559
BanII GRGCYC 2 cut(s) 448, 903
BauI CACGAG 1 cut(s) 921
Bbv12I GWGCWC 4 cut(s) 155, 188, 448, 903
BbvI GCAGC 3 cut(s) 824, 944, 991
BccI CCATC 5 cut(s) 38, 317, 349, 578, 872
BceAI ACGGC 1 cut(s) 419
BciT130I CCWGG 1 cut(s) 664
BclI TGATCA 1 cut(s) 103
BcnI CCSGG 1 cut(s) 1014
BcoDI GTCTC 2 cut(s) 125, 981
BfmI CTRYAG 2 cut(s) 189, 958
BisI GCNGC 3 cut(s) 813, 958, 1005
BlsI GCNGC 3 cut(s) 814, 959, 1006
Bme1390I CCNGG 2 cut(s) 664, 1014
Bme18I GGWCC 4 cut(s) 660, 792, 881, 1010
BmeRI GACNNNNNGTC 1 cut(s) 37
BmgT120I GGNCC 4 cut(s) 660, 792, 881, 1010
BmiI GGNNCC 2 cut(s) 49, 561
BmrFI CCNGG 2 cut(s) 664, 1014
BmsI GCATC 8 cut(s) 55, 365, 492, 604, 650, 686, 849, 1039
BpmI CTGGAG 1 cut(s) 870
Bpu10I CCTNAGC 1 cut(s) 415
BpuEI CTTGAG 2 cut(s) 523, 782
BpuMI CCSGG 1 cut(s) 1014
BsaI GGTCTC 1 cut(s) 125
BsaJI CCNNGG 4 cut(s) 401, 563, 795, 982
Bsc4I CCNNNNNNNGG 3 cut(s) 275, 371, 941
Bse1I ACTGG 1 cut(s) 452
Bse3DI GCAATG 1 cut(s) 1099
BseBI CCWGG 1 cut(s) 664
BseDI CCNNGG 4 cut(s) 401, 563, 795, 982
BseGI GGATG 3 cut(s) 328, 595, 1054
BseLI CCNNNNNNNGG 3 cut(s) 275, 371, 941
BseMI GCAATG 1 cut(s) 1099
BseMII CTCAG 3 cut(s) 300, 759, 888
BseNI ACTGG 1 cut(s) 452
BseRI GAGGAG 2 cut(s) 143, 758
BseSI GKGCMC 1 cut(s) 188
BseXI GCAGC 3 cut(s) 824, 944, 991
BseYI CCCAGC 1 cut(s) 540
BsgI GTGCAG 1 cut(s) 729
Bsh1236I CGCG 1 cut(s) 514
BshFI GGCC 2 cut(s) 406, 945
BshNI GGYRCC 2 cut(s) 47, 559
BsiHKAI GWGCWC 4 cut(s) 155, 188, 448, 903
BsiSI CCGG 1 cut(s) 1013
BslI CCNNNNNNNGG 3 cut(s) 275, 371, 941
BsmAI GTCTC 2 cut(s) 125, 981
BsmBI CGTCTC 1 cut(s) 981
BsnI GGCC 2 cut(s) 406, 945
Bso31I GGTCTC 1 cut(s) 125
Bsp1286I GDGCHC 4 cut(s) 155, 188, 448, 903
Bsp143I GATC 4 cut(s) 103, 244, 548, 1069
BspACI CCGC 4 cut(s) 301, 371, 474, 512
BspANI GGCC 2 cut(s) 406, 945
BspCNI CTCAG 3 cut(s) 301, 760, 889
BspFNI CGCG 1 cut(s) 514
BspHI TCATGA 1 cut(s) 73
BspLI GGNNCC 2 cut(s) 49, 561
BspMAI CTGCAG 1 cut(s) 962
BspPI GGATC 1 cut(s) 1077
BspQI GCTCTTC 2 cut(s) 947, 1110
BspT107I GGYRCC 2 cut(s) 47, 559
BspTNI GGTCTC 1 cut(s) 125
BsrDI GCAATG 1 cut(s) 1099
BsrI ACTGG 1 cut(s) 452
BssECI CCNNGG 4 cut(s) 401, 563, 795, 982
BssMI GATC 4 cut(s) 103, 244, 548, 1069
BssSI CACGAG 1 cut(s) 921
BssT1I CCWWGG 3 cut(s) 563, 795, 982
Bst2BI CACGAG 1 cut(s) 921
Bst2UI CCWGG 1 cut(s) 664
Bst4CI ACNGT 5 cut(s) 397, 637, 673, 970, 1028
Bst6I CTCTTC 3 cut(s) 795, 947, 1110
BstC8I GCNNGC 2 cut(s) 281, 432
BstDEI CTNAG 6 cut(s) 309, 415, 768, 891, 897, 1122
BstDSI CCRYGG 1 cut(s) 401
BstF5I GGATG 3 cut(s) 328, 595, 1054
BstFNI CGCG 1 cut(s) 514
BstKTI GATC 4 cut(s) 106, 247, 551, 1072
BstMAI GTCTC 2 cut(s) 125, 981
BstMBI GATC 4 cut(s) 103, 244, 548, 1069
BstMWI GCNNNNNNNGC 4 cut(s) 480, 541, 764, 907
BstNI CCWGG 1 cut(s) 664
BstSCI CCNGG 2 cut(s) 662, 1012
BstSFI CTRYAG 2 cut(s) 189, 958
BstSLI GKGCMC 1 cut(s) 188
BstUI CGCG 1 cut(s) 514
BstV1I GCAGC 3 cut(s) 824, 944, 991
BsuRI GGCC 2 cut(s) 406, 945
BtgI CCRYGG 1 cut(s) 401
BtsCI GGATG 3 cut(s) 328, 595, 1054
BtsI GCAGTG 1 cut(s) 967
BtsIMutI CAGTG 5 cut(s) 153, 393, 463, 678, 967
Cac8I GCNNGC 2 cut(s) 281, 432
CciI TCATGA 1 cut(s) 73
Cfr13I GGNCC 4 cut(s) 660, 792, 881, 1010
Csp6I GTAC 3 cut(s) 464, 560, 647
CviAII CATG 4 cut(s) 28, 74, 107, 875
CviQI GTAC 3 cut(s) 464, 560, 647
DdeI CTNAG 6 cut(s) 309, 415, 768, 891, 897, 1122
DpnI GATC 4 cut(s) 105, 246, 550, 1071
DpnII GATC 4 cut(s) 103, 244, 548, 1069
DriI GACNNNNNGTC 1 cut(s) 37
EaeI YGGCCR 2 cut(s) 404, 943
Eam1104I CTCTTC 3 cut(s) 795, 947, 1110
Eam1105I GACNNNNNGTC 1 cut(s) 37
EarI CTCTTC 3 cut(s) 795, 947, 1110
Ecl136II GAGCTC 2 cut(s) 446, 901
Eco130I CCWWGG 3 cut(s) 563, 795, 982
Eco24I GRGCYC 2 cut(s) 448, 903
Eco31I GGTCTC 1 cut(s) 125
Eco47I GGWCC 4 cut(s) 660, 792, 881, 1010
Eco53kI GAGCTC 2 cut(s) 446, 901
Eco57I CTGAAG 1 cut(s) 177
EcoICRI GAGCTC 2 cut(s) 446, 901
EcoRI GAATTC 1 cut(s) 93
EcoRII CCWGG 1 cut(s) 662
EcoT14I CCWWGG 3 cut(s) 563, 795, 982
EcoT38I GRGCYC 2 cut(s) 448, 903
ErhI CCWWGG 3 cut(s) 563, 795, 982
Esp3I CGTCTC 1 cut(s) 981
FaeI CATG 4 cut(s) 31, 77, 110, 878
FalI AAGNNNNNCTT 2 cut(s) 538, 570
FatI CATG 4 cut(s) 27, 73, 106, 874
FauI CCCGC 2 cut(s) 294, 364
FauNDI CATATG 3 cut(s) 124, 439, 1176
FbaI TGATCA 1 cut(s) 103
Fnu4HI GCNGC 3 cut(s) 813, 958, 1005
FokI GGATG 3 cut(s) 335, 582, 1061
FriOI GRGCYC 2 cut(s) 448, 903
Fsp4HI GCNGC 3 cut(s) 813, 958, 1005
GluI GCNGC 3 cut(s) 813, 958, 1005
GsaI CCCAGC 1 cut(s) 544
GsuI CTGGAG 1 cut(s) 870
HaeIII GGCC 2 cut(s) 406, 945
HapII CCGG 1 cut(s) 1013
Hin1II CATG 4 cut(s) 31, 77, 110, 878
HincII GTYRAC 1 cut(s) 205
HindII GTYRAC 1 cut(s) 205
HindIII AAGCTT 2 cut(s) 259, 938
HinfI GANTC 6 cut(s) 38, 77, 119, 220, 305, 1193
HpaII CCGG 1 cut(s) 1013
HphI GGTGA 3 cut(s) 486, 543, 924
Hpy166II GTNNAC 2 cut(s) 186, 205
Hpy188I TCNGA 8 cut(s) 43, 64, 118, 225, 249, 310, 687, 1074
Hpy188III TCNNGA 4 cut(s) 74, 86, 599, 1197
Hpy8I GTNNAC 2 cut(s) 186, 205
Hpy99I CGWCG 1 cut(s) 691
HpyAV CCTTC 4 cut(s) 286, 375, 715, 942
HpyCH4III ACNGT 5 cut(s) 397, 637, 673, 970, 1028
HpyCH4IV ACGT 3 cut(s) 689, 706, 1063
HpyCH4V TGCA 9 cut(s) 27, 110, 145, 186, 710, 926, 960, 1060, 1104
HpyF10VI GCNNNNNNNGC 4 cut(s) 480, 541, 764, 907
HpyF3I CTNAG 6 cut(s) 309, 415, 768, 891, 897, 1122
HpySE526I ACGT 3 cut(s) 689, 706, 1063
Hsp92II CATG 4 cut(s) 31, 77, 110, 878
KpnI GGTACC 1 cut(s) 563
Ksp22I TGATCA 1 cut(s) 103
Kzo9I GATC 4 cut(s) 103, 244, 548, 1069
LguI GCTCTTC 2 cut(s) 947, 1110
LmnI GCTCC 3 cut(s) 443, 688, 1001
Lsp1109I GCAGC 3 cut(s) 824, 944, 991
LweI GCATC 8 cut(s) 55, 365, 492, 604, 650, 686, 849, 1039
MaeII ACGT 3 cut(s) 689, 706, 1063
MaeIII GTNAC 3 cut(s) 13, 333, 930
MalI GATC 4 cut(s) 105, 246, 550, 1071
MboI GATC 4 cut(s) 103, 244, 548, 1069
MboII GAAGA 6 cut(s) 254, 601, 620, 812, 964, 1127
MfeI CAATTG 2 cut(s) 215, 824
MhlI GDGCHC 4 cut(s) 155, 188, 448, 903
MluCI AATT 8 cut(s) 54, 93, 111, 139, 215, 737, 824, 974
MlyI GAGTC 4 cut(s) 47, 71, 128, 229
MmeI TCCRAC 1 cut(s) 710
MnlI CCTC 8 cut(s) 121, 208, 598, 640, 736, 757, 802, 894
MroXI GAANNNNTTC 1 cut(s) 93
MseI TTAA 5 cut(s) 348, 522, 819, 839, 1077
MslI CAYNNNNRTG 1 cut(s) 600
MspA1I CMGCKG 2 cut(s) 301, 815
MspI CCGG 1 cut(s) 1013
MspR9I CCNGG 2 cut(s) 664, 1014
MunI CAATTG 2 cut(s) 215, 824
MvaI CCWGG 1 cut(s) 664
MvnI CGCG 1 cut(s) 514
MwoI GCNNNNNNNGC 4 cut(s) 480, 541, 764, 907
NciI CCSGG 1 cut(s) 1014
NdeI CATATG 3 cut(s) 124, 439, 1176
NdeII GATC 4 cut(s) 103, 244, 548, 1069
NlaIII CATG 4 cut(s) 31, 77, 110, 878
NlaIV GGNNCC 2 cut(s) 49, 561
NmuCI GTSAC 2 cut(s) 333, 930
PagI TCATGA 1 cut(s) 73
PciSI GCTCTTC 2 cut(s) 947, 1110
PdmI GAANNNNTTC 1 cut(s) 93
PfeI GAWTC 2 cut(s) 305, 1193
PflMI CCANNNNNTGG 1 cut(s) 941
PfoI TCCNGGA 2 cut(s) 662, 1012
PkrI GCNGC 3 cut(s) 814, 959, 1006
PleI GAGTC 4 cut(s) 46, 71, 127, 228
PpsI GAGTC 4 cut(s) 46, 71, 127, 228
Psp124BI GAGCTC 2 cut(s) 448, 903
Psp6I CCWGG 1 cut(s) 662
PspFI CCCAGC 1 cut(s) 540
PspGI CCWGG 1 cut(s) 662
PspN4I GGNNCC 2 cut(s) 49, 561
PspPI GGNCC 4 cut(s) 660, 792, 881, 1010
PstI CTGCAG 1 cut(s) 962
PvuII CAGCTG 1 cut(s) 815
RsaI GTAC 3 cut(s) 465, 561, 648
RsaNI GTAC 3 cut(s) 464, 560, 647
RseI CAYNNNNRTG 1 cut(s) 600
SacI GAGCTC 2 cut(s) 448, 903
SapI GCTCTTC 2 cut(s) 947, 1110
SaqAI TTAA 5 cut(s) 348, 522, 819, 839, 1077
SatI GCNGC 3 cut(s) 813, 958, 1005
Sau3AI GATC 4 cut(s) 103, 244, 548, 1069
Sau96I GGNCC 4 cut(s) 660, 792, 881, 1010
SchI GAGTC 4 cut(s) 47, 71, 128, 229
ScrFI CCNGG 2 cut(s) 664, 1014
SduI GDGCHC 4 cut(s) 155, 188, 448, 903
SfaNI GCATC 8 cut(s) 55, 365, 492, 604, 650, 686, 849, 1039
SfcI CTRYAG 2 cut(s) 189, 958
SinI GGWCC 4 cut(s) 660, 792, 881, 1010
SmiMI CAYNNNNRTG 1 cut(s) 600
SmlI CTYRAG 2 cut(s) 502, 761
SmoI CTYRAG 2 cut(s) 502, 761
Sse9I AATT 8 cut(s) 54, 93, 111, 139, 215, 737, 824, 974
SsiI CCGC 4 cut(s) 301, 371, 474, 512
SstI GAGCTC 2 cut(s) 448, 903
StyD4I CCNGG 2 cut(s) 662, 1012
StyI CCWWGG 3 cut(s) 563, 795, 982
TaaI ACNGT 5 cut(s) 397, 637, 673, 970, 1028
TaiI ACGT 3 cut(s) 692, 709, 1066
TaqI TCGA 1 cut(s) 240
TasI AATT 8 cut(s) 54, 93, 111, 139, 215, 737, 824, 974
TatI WGTACW 1 cut(s) 463
TfiI GAWTC 2 cut(s) 305, 1193
Tru1I TTAA 5 cut(s) 348, 522, 819, 839, 1077
Tru9I TTAA 5 cut(s) 348, 522, 819, 839, 1077
TscAI CASTG 5 cut(s) 160, 400, 463, 678, 967
TseFI GTSAC 2 cut(s) 333, 930
TseI GCWGC 3 cut(s) 812, 957, 1004
Tsp45I GTSAC 2 cut(s) 333, 930
TspDTI ATGAA 5 cut(s) 186, 426, 717, 1138, 1182
TspGWI ACGGA 1 cut(s) 1005
TspRI CASTG 5 cut(s) 160, 400, 463, 678, 967
Van91I CCANNNNNTGG 1 cut(s) 941
VneI GTGCAC 1 cut(s) 184
VpaK11BI GGWCC 4 cut(s) 660, 792, 881, 1010
XapI RAATTY 2 cut(s) 93, 139
XcmI CCANNNNNNNNNTGG 1 cut(s) 670
XmnI GAANNNNTTC 1 cut(s) 93
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.