Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr16

Orthogroup ID

OG0008351

Physical Location & Seq

Genomic Coordinates Reverse (-)

13905852 .. 13907821

Gene Structure 1970 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom16g17650.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGACAAGGAATCAGAATGTGTCACAAATTACTCAGAAGGTCTTTCTCATGATTCAAATCATGAGAGAATCCCCAGTGATCACGTGATTTCAGAGTCATATGAGCATATTAATGGGGATCGTGAACAACAAAATTTGGAAGAAAGTCTTGAAGTAAAGGAGTATGAAGTGAAAGAATGTACTACAGAAAACTCTGTTGATGTTTCTCAACTGAGTCTTATTGAAAAATTTAGTGAGGATCAGAATGTAGTAAGGTCGAACTCTGATAATGACCAGCCTTTGGATAAGGTTCAACTGGATTCTGGGAAAACAAAGGTTAGTAGTAAGTCACTAGCATCTGCAAAACGTGCATCAAAACCTACTGCGGGAAATGCTAGAACAAAACACACTGTTCCACAGCCATTTACCTTAGCGACTGAAAAGCGTGCTTCATGTGGAACTCGTCCAGTCAGTGCTGTACTTGATTGCGGTAATGGTGCCAATAAATTACCCAACACAAGTGATCTGCGTCATCTTAATACCACAAAGCATAACCAGCCAATATCACCTTTGGTACCAAGGATGCCAATGCAACCAGATAAGAAGAAGCATTCTGATGAGGAAGATTCCTGTTCTGTTGCTTCCACGTTAGAGCAGAAGCACCAAGCATTGGAGGTGCAAAAAACTGAAAGCGATGCAAGGACCAAGGAAGAGAAGGAGGCGGCTATCAAGCAACTGAGAAAGAGTTTAACATTTAAGGCAAACCCGATGCCAAGCTTCTATCACGAGGGACCTCCACCTAAAACTGAACTTAAAAAGCTGCCACCAACTCGTGCAAAGTCACCAAAGCTTGGCCGGAGGATGAGCTGCAGTGAAACAGTCAAAGTATCTCGAGGAGACAGAATGAAAGGAAATCGTCACAGTATGGGTAGTTACAAAGAAGACACCACTTATGCTGGTTCCCTGAAAAGTGAGGGTCAGATCAACATCCAAATTGGTAATGCCGTTTGCGAGTTCATTGATGAGACTAAGAAAGTGGACGAGATAAACAAGTTTGTTCCGGCAAACCTAAATGGACAGCACATGGACATGTATGTTCAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000902 GO:0001558 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0008017 GO:0008092 GO:0008150 GO:0009653 GO:0009826 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0016049 GO:0022603 GO:0022604 GO:0030308 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032502 GO:0032989 GO:0040007 GO:0040008 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045926 GO:0048519 GO:0048523 GO:0048589 GO:0048638 GO:0048640 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051510 GO:0051511 GO:0055028 GO:0060560 GO:0065007 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

362

Amino Acids

40.25

Weight (kDa)

6.87

Isoelectric Point (pI)

53.96

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23090 AT3G23090 AT3G23090 AT3G23090 AT3G23090
fragaria_vesca	FvH4_4g02740 FvH4_4g02740 FvH4_4g02740
malus_domestica	MD13G1207700.v1.1 MD16G1209200.v1.1
prunus_persica	Prupe.1G031100_v2.0.a1 Prupe.1G031100_v2.0.a1
pyrus_communis	pycom13g17990 pycom16g17650
rosa_chinensis	RchiOBHm_Chr4g0390601
rosa_laevigata	RLG00000009915
rosa_multiflora	Rmu_sc0001380.1_g000010
rosa_roxburghii	Rroxscaffold_5G00336540
rosa_rugosa	Rorug03G0331100
rosa_samantha	Rh4AG032600 Rh4BG026700 Rh4CG036400 Rh4DG029400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	553
AccB1I	GGYRCC	2 cut(s)	476, 553
AccB7I	CCANNNNNTGG	3 cut(s)	280, 649, 830
AciI	CCGC	3 cut(s)	365, 468, 701
AclWI	GGATC	2 cut(s)	126, 246
AcoI	YGGCCR	1 cut(s)	832
AcsI	RAATTY	2 cut(s)	133, 227
AcvI	CACGTG	1 cut(s)	85
AfaI	GTAC	3 cut(s)	181, 459, 555
AfiI	CCNNNNNNNGG	4 cut(s)	280, 365, 649, 830
AflIII	ACRYGT	1 cut(s)	1068
AgsI	TTSAA	5 cut(s)	57, 152, 224, 293, 1079
AluBI	AGCT	4 cut(s)	756, 799, 829, 846
AluI	AGCT	4 cut(s)	756, 799, 829, 846
Alw26I	GTCTC	2 cut(s)	870, 998
AlwI	GGATC	2 cut(s)	126, 246
Ama87I	CYCGRG	1 cut(s)	870
AoxI	GGCC	1 cut(s)	832
ApeKI	GCWGC	2 cut(s)	799, 846
ApoI	RAATTY	2 cut(s)	133, 227
AseI	ATTAAT	1 cut(s)	111
Asp718I	GGTACC	1 cut(s)	553
AspS9I	GGNCC	2 cut(s)	681, 770
AsuHPI	GGTGA	2 cut(s)	537, 813
AvaI	CYCGRG	1 cut(s)	870
AvaII	GGWCC	2 cut(s)	681, 770
BanI	GGYRCC	2 cut(s)	476, 553
BauI	CACGAG	2 cut(s)	764, 810
BbrPI	CACGTG	1 cut(s)	85
BbsI	GAAGAC	1 cut(s)	927
BbvI	GCAGC	2 cut(s)	786, 833
BceAI	ACGGC	1 cut(s)	968
BclI	TGATCA	1 cut(s)	79
BcoDI	GTCTC	2 cut(s)	870, 998
BfaI	CTAG	2 cut(s)	332, 375
BfmI	CTRYAG	2 cut(s)	183, 847
BisI	GCNGC	3 cut(s)	702, 800, 847
BlsI	GCNGC	3 cut(s)	703, 801, 848
Bme18I	GGWCC	2 cut(s)	681, 770
BmeT110I	CYCGRG	1 cut(s)	870
BmgT120I	GGNCC	2 cut(s)	681, 770
BmiI	GGNNCC	4 cut(s)	478, 555, 771, 940
BmrI	ACTGGG	1 cut(s)	69
BmsI	GCATC	5 cut(s)	344, 359, 552, 664, 738
BmuI	ACTGGG	1 cut(s)	69
BpiI	GAAGAC	1 cut(s)	927
Bpu10I	CCTNAGC	1 cut(s)	409
BsaAI	YACGTR	1 cut(s)	85
BsaBI	GATNNNNATC	2 cut(s)	57, 965
BsaJI	CCNNGG	2 cut(s)	557, 684
Bsc4I	CCNNNNNNNGG	4 cut(s)	280, 365, 649, 830
Bse1I	ACTGG	3 cut(s)	75, 300, 446
Bse8I	GATNNNNATC	2 cut(s)	57, 965
BseDI	CCNNGG	2 cut(s)	557, 684
BseGI	GGATG	3 cut(s)	567, 846, 966
BseJI	GATNNNNATC	2 cut(s)	57, 965
BseLI	CCNNNNNNNGG	4 cut(s)	280, 365, 649, 830
BseMII	CTCAG	3 cut(s)	48, 203, 707
BseNI	ACTGG	3 cut(s)	75, 300, 446
BseRI	GAGGAG	1 cut(s)	888
BseXI	GCAGC	2 cut(s)	786, 833
BshFI	GGCC	1 cut(s)	834
BshNI	GGYRCC	2 cut(s)	476, 553
BsiHKCI	CYCGRG	1 cut(s)	870
BsiSI	CCGG	2 cut(s)	835, 1040
BslFI	GGGAC	1 cut(s)	783
BslI	CCNNNNNNNGG	4 cut(s)	280, 365, 649, 830
BsmAI	GTCTC	2 cut(s)	870, 998
BsmFI	GGGAC	1 cut(s)	783
BsmI	GAATGC	1 cut(s)	589
BsnI	GGCC	1 cut(s)	834
BsoBI	CYCGRG	1 cut(s)	870
Bsp143I	GATC	5 cut(s)	79, 118, 238, 502, 960
BspACI	CCGC	3 cut(s)	365, 468, 701
BspANI	GGCC	1 cut(s)	834
BspCNI	CTCAG	3 cut(s)	47, 204, 708
BspHI	TCATGA	2 cut(s)	49, 61
BspLI	GGNNCC	4 cut(s)	478, 555, 771, 940
BspMAI	CTGCAG	1 cut(s)	851
BspPI	GGATC	2 cut(s)	126, 246
BspT107I	GGYRCC	2 cut(s)	476, 553
BsrI	ACTGG	3 cut(s)	75, 300, 446
BssECI	CCNNGG	2 cut(s)	557, 684
BssMI	GATC	5 cut(s)	79, 118, 238, 502, 960
BssSI	CACGAG	2 cut(s)	764, 810
BssT1I	CCWWGG	2 cut(s)	557, 684
Bst2BI	CACGAG	2 cut(s)	764, 810
Bst4CI	ACNGT	3 cut(s)	391, 859, 902
Bst6I	CTCTTC	1 cut(s)	684
BstAPI	GCANNNNNTGC	1 cut(s)	347
BstBAI	YACGTR	1 cut(s)	85
BstC8I	GCNNGC	1 cut(s)	426
BstDEI	CTNAG	5 cut(s)	34, 212, 409, 716, 1008
BstF5I	GGATG	3 cut(s)	567, 846, 966
BstKTI	GATC	5 cut(s)	82, 121, 241, 505, 963
BstMAI	GTCTC	2 cut(s)	870, 998
BstMBI	GATC	5 cut(s)	79, 118, 238, 502, 960
BstMWI	GCNNNNNNNGC	3 cut(s)	347, 371, 535
BstNSI	RCATGY	1 cut(s)	1072
BstSFI	CTRYAG	2 cut(s)	183, 847
BstV1I	GCAGC	2 cut(s)	786, 833
BstV2I	GAAGAC	1 cut(s)	927
BsuRI	GGCC	1 cut(s)	834
BtgZI	GCGATG	1 cut(s)	687
BtsCI	GGATG	3 cut(s)	567, 846, 966
BtsI	GCAGTG	1 cut(s)	856
BtsIMutI	CAGTG	4 cut(s)	82, 387, 457, 856
Cac8I	GCNNGC	1 cut(s)	426
CciI	TCATGA	2 cut(s)	49, 61
Cfr13I	GGNCC	2 cut(s)	681, 770
CseI	GACGC	1 cut(s)	497
Csp6I	GTAC	3 cut(s)	180, 458, 554
CviAII	CATG	5 cut(s)	50, 62, 432, 1063, 1069
CviJI	RGCY	9 cut(s)	277, 400, 538, 704, 756, 799, 829, 834, 846
CviKI_1	RGCY	9 cut(s)	277, 400, 538, 704, 756, 799, 829, 834, 846
CviQI	GTAC	3 cut(s)	180, 458, 554
DdeI	CTNAG	5 cut(s)	34, 212, 409, 716, 1008
DpnI	GATC	5 cut(s)	81, 120, 240, 504, 962
DpnII	GATC	5 cut(s)	79, 118, 238, 502, 960
EaeI	YGGCCR	1 cut(s)	832
Eam1104I	CTCTTC	1 cut(s)	684
EarI	CTCTTC	1 cut(s)	684
Eco130I	CCWWGG	2 cut(s)	557, 684
Eco47I	GGWCC	2 cut(s)	681, 770
Eco72I	CACGTG	1 cut(s)	85
Eco88I	CYCGRG	1 cut(s)	870
EcoO109I	RGGNCCY	1 cut(s)	770
EcoT14I	CCWWGG	2 cut(s)	557, 684
ErhI	CCWWGG	2 cut(s)	557, 684
FaeI	CATG	5 cut(s)	53, 65, 435, 1066, 1072
FalI	AAGNNNNNCTT	2 cut(s)	132, 164
FaqI	GGGAC	1 cut(s)	783
FatI	CATG	5 cut(s)	49, 61, 431, 1062, 1068
FauI	CCCGC	1 cut(s)	358
FauNDI	CATATG	1 cut(s)	100
FbaI	TGATCA	1 cut(s)	79
Fnu4HI	GCNGC	3 cut(s)	702, 800, 847
FokI	GGATG	3 cut(s)	574, 853, 953
Fsp4HI	GCNGC	3 cut(s)	702, 800, 847
FspBI	CTAG	2 cut(s)	332, 375
GluI	GCNGC	3 cut(s)	702, 800, 847
HaeIII	GGCC	1 cut(s)	834
HapII	CCGG	2 cut(s)	835, 1040
HgaI	GACGC	1 cut(s)	497
Hin1II	CATG	5 cut(s)	53, 65, 435, 1066, 1072
HindIII	AAGCTT	2 cut(s)	754, 827
HinfI	GANTC	7 cut(s)	11, 53, 69, 95, 214, 299, 605
HpaII	CCGG	2 cut(s)	835, 1040
HphI	GGTGA	2 cut(s)	537, 813
Hpy166II	GTNNAC	2 cut(s)	125, 1018
Hpy188I	TCNGA	7 cut(s)	16, 37, 94, 243, 265, 595, 960
Hpy188III	TCNNGA	7 cut(s)	50, 62, 122, 149, 764, 870, 1083
Hpy8I	GTNNAC	2 cut(s)	125, 1018
HpyAV	CCTTC	2 cut(s)	32, 688
HpyCH4III	ACNGT	3 cut(s)	391, 859, 902
HpyCH4IV	ACGT	3 cut(s)	84, 346, 626
HpyCH4V	TGCA	7 cut(s)	341, 350, 571, 658, 677, 815, 849
HpyF10VI	GCNNNNNNNGC	3 cut(s)	347, 371, 535
HpyF3I	CTNAG	5 cut(s)	34, 212, 409, 716, 1008
HpySE526I	ACGT	3 cut(s)	84, 346, 626
Hsp92II	CATG	5 cut(s)	53, 65, 435, 1066, 1072
KpnI	GGTACC	1 cut(s)	557
Ksp22I	TGATCA	1 cut(s)	79
Kzo9I	GATC	5 cut(s)	79, 118, 238, 502, 960
Lsp1109I	GCAGC	2 cut(s)	786, 833
LweI	GCATC	5 cut(s)	344, 359, 552, 664, 738
MaeI	CTAG	2 cut(s)	332, 375
MaeII	ACGT	3 cut(s)	84, 346, 626
MaeIII	GTNAC	5 cut(s)	22, 327, 819, 896, 911
MalI	GATC	5 cut(s)	81, 120, 240, 504, 962
MboI	GATC	5 cut(s)	79, 118, 238, 502, 960
MboII	GAAGA	5 cut(s)	152, 595, 614, 701, 932
MluCI	AATT	5 cut(s)	28, 133, 227, 485, 972
MlyI	GAGTC	2 cut(s)	104, 223
MnlI	CCTC	9 cut(s)	229, 592, 646, 691, 760, 783, 831, 866, 946
MseI	TTAA	5 cut(s)	111, 516, 728, 735, 792
MslI	CAYNNNNRTG	3 cut(s)	111, 594, 1067
MspI	CCGG	2 cut(s)	835, 1040
Mva1269I	GAATGC	1 cut(s)	589
MwoI	GCNNNNNNNGC	3 cut(s)	347, 371, 535
NdeI	CATATG	1 cut(s)	100
NdeII	GATC	5 cut(s)	79, 118, 238, 502, 960
NlaIII	CATG	5 cut(s)	53, 65, 435, 1066, 1072
NlaIV	GGNNCC	4 cut(s)	478, 555, 771, 940
NmuCI	GTSAC	4 cut(s)	22, 327, 819, 896
NspI	RCATGY	1 cut(s)	1072
PaeR7I	CTCGAG	1 cut(s)	870
PagI	TCATGA	2 cut(s)	49, 61
PciI	ACATGT	1 cut(s)	1068
PctI	GAATGC	1 cut(s)	589
PfeI	GAWTC	5 cut(s)	11, 53, 69, 299, 605
PflMI	CCANNNNNTGG	3 cut(s)	280, 649, 830
PkrI	GCNGC	3 cut(s)	703, 801, 848
PleI	GAGTC	2 cut(s)	103, 222
PmaCI	CACGTG	1 cut(s)	85
PmlI	CACGTG	1 cut(s)	85
PpsI	GAGTC	2 cut(s)	103, 222
Ppu21I	YACGTR	1 cut(s)	85
PpuMI	RGGWCCY	1 cut(s)	770
PscI	ACATGT	1 cut(s)	1068
PshBI	ATTAAT	1 cut(s)	111
Psp5II	RGGWCCY	1 cut(s)	770
PspCI	CACGTG	1 cut(s)	85
PspN4I	GGNNCC	4 cut(s)	478, 555, 771, 940
PspPI	GGNCC	2 cut(s)	681, 770
PspPPI	RGGWCCY	1 cut(s)	770
PstI	CTGCAG	1 cut(s)	851
RsaI	GTAC	3 cut(s)	181, 459, 555
RsaNI	GTAC	3 cut(s)	180, 458, 554
RseI	CAYNNNNRTG	3 cut(s)	111, 594, 1067
SaqAI	TTAA	5 cut(s)	111, 516, 728, 735, 792
SatI	GCNGC	3 cut(s)	702, 800, 847
Sau3AI	GATC	5 cut(s)	79, 118, 238, 502, 960
Sau96I	GGNCC	2 cut(s)	681, 770
SchI	GAGTC	2 cut(s)	104, 223
SfaNI	GCATC	5 cut(s)	344, 359, 552, 664, 738
SfcI	CTRYAG	2 cut(s)	183, 847
Sfr274I	CTCGAG	1 cut(s)	870
SinI	GGWCC	2 cut(s)	681, 770
SlaI	CTCGAG	1 cut(s)	870
SmiMI	CAYNNNNRTG	3 cut(s)	111, 594, 1067
SmlI	CTYRAG	1 cut(s)	870
SmoI	CTYRAG	1 cut(s)	870
Sse9I	AATT	5 cut(s)	28, 133, 227, 485, 972
SsiI	CCGC	3 cut(s)	365, 468, 701
SspMI	CTAG	2 cut(s)	332, 375
StyI	CCWWGG	2 cut(s)	557, 684
TaaI	ACNGT	3 cut(s)	391, 859, 902
TaiI	ACGT	3 cut(s)	87, 349, 629
TaqI	TCGA	2 cut(s)	257, 871
TasI	AATT	5 cut(s)	28, 133, 227, 485, 972
TatI	WGTACW	2 cut(s)	179, 457
TauI	GCSGC	1 cut(s)	704
TfiI	GAWTC	5 cut(s)	11, 53, 69, 299, 605
Tru1I	TTAA	5 cut(s)	111, 516, 728, 735, 792
Tru9I	TTAA	5 cut(s)	111, 516, 728, 735, 792
TscAI	CASTG	4 cut(s)	82, 394, 457, 856
TseFI	GTSAC	4 cut(s)	22, 327, 819, 896
TseI	GCWGC	2 cut(s)	799, 846
Tsp45I	GTSAC	4 cut(s)	22, 327, 819, 896
TspDTI	ATGAA	4 cut(s)	180, 420, 899, 985
TspRI	CASTG	4 cut(s)	82, 394, 457, 856
Van91I	CCANNNNNTGG	3 cut(s)	280, 649, 830
VpaK11BI	GGWCC	2 cut(s)	681, 770
VspI	ATTAAT	1 cut(s)	111
XapI	RAATTY	2 cut(s)	133, 227
XceI	RCATGY	1 cut(s)	1072
XhoI	CTCGAG	1 cut(s)	870
XspI	CTAG	2 cut(s)	332, 375

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.