Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb4

Orthogroup ID

OG0008351

Physical Location & Seq

Genomic Coordinates Reverse (-)

2485819 .. 2491580

Gene Structure 5762 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_4g02740.t3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1200 bp

ATGGCAATAGAAGTTACAGATATTTGCATGGACAAGGAGTCAGATGGTGCCATAATTTATTCGGATGCTTCTAATGACTCAAATCGTATAAGAATTCCCAATGGTCATGCGATTTCAGAGTCATATGAGCATACCCAAAATTTGCAGGAAAACACTGAAGCAAAGGATTATGAAGTAAAGGAATGCACTACAGAAACCTCTGTTGATGTTTCCCAATTGAGTCAGAATGAAAATGCTAACGAAGATCAGAATGTAGTAAGCTTGAAGCCTGATAATGGCAAGCCTCTGGAGAAGGTTCAGCGGGATTCAGAGAAAACAAATGATGGAATCAAGTCACGCGCATCTGTTAATCAAGCATCAAAACCTTCTGTGGGAATTGCTAAAACAAAACACACTATTCCGCGGCCATTTACCTTGGCAACTGAAAAACGTGCTTCAAGCGGAGCTCGACCGATCAGTGCTGTACTAGATTATGGTAAAGCCATCAATAAATCACCCAACTCGAGCAATCCGCGGCATCTTAATACCACAAAGCATACGCAGCCAATATCACCTTTGGTACCAAGGAAGCCATTTCAACCTGTTGGGAAGAAGCATCCTGATGAGGAAGATACTTGTTCTGTTGCTTCCTCTACAGTAGCATCTATACGAGCTATTAGGTCCAGGACAACAGTGGCATCAGCTCCAACATTTAGAAGTAATGAACGTGCAGAGAAAAGGAAGGAGTTTTATTCAAAATTAGAGGAGAAACATCACGCACTCGAGGCTGAGAAAAATCAAAGTGAAGCAAGGACCAAGGAAGAGAAAGAGGCAGCTGTTAAGCAATTGAGAAAGAGTTTAACGTTCAAGGCAAACCCTATGCCAAGTTTCTACCATGATGGACCTCCAGCAAAGACTGAACTAAAAAAGATGCCCCCAACTCGTGCTAAGTCACCAAACCTTGGCCGAAGGAAGAGCTGCAGTGATACGGTCAAAGTATCCCAACGAGAAGGAGTGAAAGGAGCTGCTGGTCCAGCAAATCGGCACAGTATGGGTAGCTACAAAAAGGATGCTTCTGTGCAACGTAAGGATCAGATTAACATTCGAAACGGAAACACTGATTGCAAGATTGTTGAAGAGCCTAAGAAAGTGGATGAGATAAGTAAGTCCATTCCAGCCAACCTAAATGGACAGCATATGGACATAATTGTTGAATCCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000902 GO:0001558 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0008017 GO:0008092 GO:0008150 GO:0009653 GO:0009826 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0016049 GO:0022603 GO:0022604 GO:0030308 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032502 GO:0032989 GO:0040007 GO:0040008 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045926 GO:0048519 GO:0048523 GO:0048589 GO:0048638 GO:0048640 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051510 GO:0051511 GO:0055028 GO:0060560 GO:0065007 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

400

Amino Acids

44.07

Weight (kDa)

9.27

Isoelectric Point (pI)

43.89

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPX2	PF06886	242 - 316	5.8e-26	Targeting protein for Xklp2 (TPX2) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23090 AT3G23090 AT3G23090 AT3G23090 AT3G23090
fragaria_vesca	FvH4_4g02740 FvH4_4g02740 FvH4_4g02740
malus_domestica	MD13G1207700.v1.1 MD16G1209200.v1.1
prunus_persica	Prupe.1G031100_v2.0.a1 Prupe.1G031100_v2.0.a1
pyrus_communis	pycom13g17990 pycom16g17650
rosa_chinensis	RchiOBHm_Chr4g0390601
rosa_laevigata	RLG00000009915
rosa_multiflora	Rmu_sc0001380.1_g000010
rosa_roxburghii	Rroxscaffold_5G00336540
rosa_rugosa	Rorug03G0331100
rosa_samantha	Rh4AG032600 Rh4BG026700 Rh4CG036400 Rh4DG029400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	559
AccB1I	GGYRCC	2 cut(s)	47, 559
AccB7I	CCANNNNNTGG	1 cut(s)	941
AccII	CGCG	3 cut(s)	339, 403, 514
AciI	CCGC	6 cut(s)	301, 401, 403, 441, 512, 514
AclI	AACGTT	1 cut(s)	842
AclWI	GGATC	1 cut(s)	1077
AcoI	YGGCCR	2 cut(s)	404, 943
AcsI	RAATTY	2 cut(s)	93, 139
AcuI	CTGAAG	1 cut(s)	177
AfaI	GTAC	2 cut(s)	465, 561
AfiI	CCNNNNNNNGG	3 cut(s)	275, 371, 941
AgsI	TTSAA	7 cut(s)	265, 438, 578, 735, 847, 1115, 1193
AhdI	GACNNNNNGTC	1 cut(s)	37
AjnI	CCWGG	1 cut(s)	662
AluBI	AGCT	8 cut(s)	261, 446, 653, 683, 815, 957, 1004, 1038
AluI	AGCT	8 cut(s)	261, 446, 653, 683, 815, 957, 1004, 1038
Alw21I	GWGCWC	1 cut(s)	448
AlwI	GGATC	1 cut(s)	1077
Ama87I	CYCGRG	2 cut(s)	502, 761
AoxI	GGCC	2 cut(s)	404, 943
ApeKI	GCWGC	4 cut(s)	541, 812, 957, 1004
ApoI	RAATTY	2 cut(s)	93, 139
Asp718I	GGTACC	1 cut(s)	559
AspLEI	GCGC	1 cut(s)	341
AspS9I	GGNCC	4 cut(s)	660, 792, 881, 1010
AsuHPI	GGTGA	3 cut(s)	486, 543, 924
AsuII	TTCGAA	1 cut(s)	1084
AvaI	CYCGRG	2 cut(s)	502, 761
AvaII	GGWCC	4 cut(s)	660, 792, 881, 1010
BanI	GGYRCC	2 cut(s)	47, 559
BanII	GRGCYC	1 cut(s)	448
BauI	CACGAG	1 cut(s)	921
Bbv12I	GWGCWC	1 cut(s)	448
BbvI	GCAGC	4 cut(s)	553, 824, 944, 991
BccI	CCATC	4 cut(s)	38, 317, 491, 872
BciT130I	CCWGG	1 cut(s)	664
BciVI	GTATCC	1 cut(s)	988
BfaI	CTAG	1 cut(s)	467
BfmI	CTRYAG	3 cut(s)	189, 633, 958
BfuI	GTATCC	1 cut(s)	988
BisI	GCNGC	6 cut(s)	404, 515, 542, 813, 958, 1005
BlsI	GCNGC	6 cut(s)	405, 516, 543, 814, 959, 1006
Bme1390I	CCNGG	1 cut(s)	664
Bme18I	GGWCC	4 cut(s)	660, 792, 881, 1010
BmeRI	GACNNNNNGTC	1 cut(s)	37
BmeT110I	CYCGRG	2 cut(s)	502, 761
BmgT120I	GGNCC	4 cut(s)	660, 792, 881, 1010
BmiI	GGNNCC	2 cut(s)	49, 561
BmrFI	CCNGG	1 cut(s)	664
BmsI	GCATC	9 cut(s)	55, 350, 365, 526, 604, 650, 686, 900, 1039
BpmI	CTGGAG	2 cut(s)	308, 870
Bpu14I	TTCGAA	1 cut(s)	1084
BsaJI	CCNNGG	6 cut(s)	401, 414, 512, 563, 795, 940
Bsc4I	CCNNNNNNNGG	3 cut(s)	275, 371, 941
BseBI	CCWGG	1 cut(s)	664
BseDI	CCNNGG	6 cut(s)	401, 414, 512, 563, 795, 940
BseGI	GGATG	4 cut(s)	70, 595, 1054, 1138
BseLI	CCNNNNNNNGG	3 cut(s)	275, 371, 941
BseMII	CTCAG	1 cut(s)	759
BseRI	GAGGAG	1 cut(s)	758
BseXI	GCAGC	4 cut(s)	553, 824, 944, 991
BsgI	GTGCAG	1 cut(s)	729
Bsh1236I	CGCG	3 cut(s)	339, 403, 514
Bsh1285I	CGRYCG	1 cut(s)	452
BshFI	GGCC	2 cut(s)	406, 945
BshNI	GGYRCC	2 cut(s)	47, 559
BsiEI	CGRYCG	1 cut(s)	452
BsiHKAI	GWGCWC	1 cut(s)	448
BsiHKCI	CYCGRG	2 cut(s)	502, 761
BslI	CCNNNNNNNGG	3 cut(s)	275, 371, 941
BsmI	GAATGC	1 cut(s)	188
BsnI	GGCC	2 cut(s)	406, 945
BsoBI	CYCGRG	2 cut(s)	502, 761
Bsp119I	TTCGAA	1 cut(s)	1084
Bsp1286I	GDGCHC	1 cut(s)	448
Bsp143I	GATC	3 cut(s)	244, 453, 1069
BspACI	CCGC	6 cut(s)	301, 401, 403, 441, 512, 514
BspANI	GGCC	2 cut(s)	406, 945
BspCNI	CTCAG	1 cut(s)	760
BspFNI	CGCG	3 cut(s)	339, 403, 514
BspLI	GGNNCC	2 cut(s)	49, 561
BspMAI	CTGCAG	1 cut(s)	962
BspPI	GGATC	1 cut(s)	1077
BspQI	GCTCTTC	2 cut(s)	947, 1110
BspT104I	TTCGAA	1 cut(s)	1084
BspT107I	GGYRCC	2 cut(s)	47, 559
BssECI	CCNNGG	6 cut(s)	401, 414, 512, 563, 795, 940
BssMI	GATC	3 cut(s)	244, 453, 1069
BssSI	CACGAG	1 cut(s)	921
BssT1I	CCWWGG	4 cut(s)	414, 563, 795, 940
Bst2BI	CACGAG	1 cut(s)	921
Bst2UI	CCWGG	1 cut(s)	664
Bst4CI	ACNGT	4 cut(s)	637, 673, 970, 1028
Bst6I	CTCTTC	3 cut(s)	795, 947, 1110
BstBI	TTCGAA	1 cut(s)	1084
BstC8I	GCNNGC	1 cut(s)	281
BstDEI	CTNAG	3 cut(s)	768, 927, 1122
BstDSI	CCRYGG	2 cut(s)	401, 512
BstF5I	GGATG	4 cut(s)	70, 595, 1054, 1138
BstFNI	CGCG	3 cut(s)	339, 403, 514
BstHHI	GCGC	1 cut(s)	341
BstKTI	GATC	3 cut(s)	247, 456, 1072
BstMBI	GATC	3 cut(s)	244, 453, 1069
BstMCI	CGRYCG	1 cut(s)	452
BstMWI	GCNNNNNNNGC	3 cut(s)	541, 764, 1013
BstNI	CCWGG	1 cut(s)	664
BstSCI	CCNGG	1 cut(s)	662
BstSFI	CTRYAG	3 cut(s)	189, 633, 958
BstUI	CGCG	3 cut(s)	339, 403, 514
BstV1I	GCAGC	4 cut(s)	553, 824, 944, 991
BsuI	GTATCC	1 cut(s)	988
BsuRI	GGCC	2 cut(s)	406, 945
BtgI	CCRYGG	2 cut(s)	401, 512
BtsCI	GGATG	4 cut(s)	70, 595, 1054, 1138
BtsI	GCAGTG	1 cut(s)	967
BtsIMutI	CAGTG	5 cut(s)	153, 463, 678, 967, 1095
Cac8I	GCNNGC	1 cut(s)	281
CfoI	GCGC	1 cut(s)	341
Cfr13I	GGNCC	4 cut(s)	660, 792, 881, 1010
Cfr42I	CCGCGG	2 cut(s)	404, 515
Csp6I	GTAC	2 cut(s)	464, 560
CviAII	CATG	3 cut(s)	28, 107, 875
CviQI	GTAC	2 cut(s)	464, 560
DdeI	CTNAG	3 cut(s)	768, 927, 1122
DpnI	GATC	3 cut(s)	246, 455, 1071
DpnII	GATC	3 cut(s)	244, 453, 1069
DriI	GACNNNNNGTC	1 cut(s)	37
EaeI	YGGCCR	2 cut(s)	404, 943
Eam1104I	CTCTTC	3 cut(s)	795, 947, 1110
Eam1105I	GACNNNNNGTC	1 cut(s)	37
EarI	CTCTTC	3 cut(s)	795, 947, 1110
Ecl136II	GAGCTC	1 cut(s)	446
Eco130I	CCWWGG	4 cut(s)	414, 563, 795, 940
Eco24I	GRGCYC	1 cut(s)	448
Eco47I	GGWCC	4 cut(s)	660, 792, 881, 1010
Eco53kI	GAGCTC	1 cut(s)	446
Eco57I	CTGAAG	1 cut(s)	177
Eco88I	CYCGRG	2 cut(s)	502, 761
EcoICRI	GAGCTC	1 cut(s)	446
EcoRI	GAATTC	1 cut(s)	93
EcoRII	CCWGG	1 cut(s)	662
EcoT14I	CCWWGG	4 cut(s)	414, 563, 795, 940
EcoT38I	GRGCYC	1 cut(s)	448
ErhI	CCWWGG	4 cut(s)	414, 563, 795, 940
FaeI	CATG	3 cut(s)	31, 110, 878
FatI	CATG	3 cut(s)	27, 106, 874
FauI	CCCGC	1 cut(s)	294
FauNDI	CATATG	2 cut(s)	124, 1176
Fnu4HI	GCNGC	6 cut(s)	404, 515, 542, 813, 958, 1005
FokI	GGATG	4 cut(s)	77, 582, 1061, 1145
FriOI	GRGCYC	1 cut(s)	448
Fsp4HI	GCNGC	6 cut(s)	404, 515, 542, 813, 958, 1005
FspBI	CTAG	1 cut(s)	467
GlaI	GCGC	1 cut(s)	340
GluI	GCNGC	6 cut(s)	404, 515, 542, 813, 958, 1005
GsuI	CTGGAG	2 cut(s)	308, 870
HaeIII	GGCC	2 cut(s)	406, 945
HhaI	GCGC	1 cut(s)	341
Hin1II	CATG	3 cut(s)	31, 110, 878
Hin6I	GCGC	1 cut(s)	339
HinP1I	GCGC	1 cut(s)	339
HindIII	AAGCTT	1 cut(s)	259
HinfI	GANTC	7 cut(s)	38, 77, 119, 220, 305, 327, 1193
HphI	GGTGA	3 cut(s)	486, 543, 924
Hpy188I	TCNGA	7 cut(s)	43, 64, 118, 225, 249, 310, 1074
Hpy188III	TCNNGA	3 cut(s)	287, 599, 1197
HpyAV	CCTTC	5 cut(s)	286, 375, 715, 942, 983
HpyCH4III	ACNGT	4 cut(s)	637, 673, 970, 1028
HpyCH4IV	ACGT	4 cut(s)	430, 706, 842, 1063
HpyCH4V	TGCA	7 cut(s)	27, 145, 186, 710, 960, 1060, 1104
HpyF10VI	GCNNNNNNNGC	3 cut(s)	541, 764, 1013
HpyF3I	CTNAG	3 cut(s)	768, 927, 1122
HpySE526I	ACGT	4 cut(s)	430, 706, 842, 1063
Hsp92II	CATG	3 cut(s)	31, 110, 878
HspAI	GCGC	1 cut(s)	339
KpnI	GGTACC	1 cut(s)	563
KspI	CCGCGG	2 cut(s)	404, 515
Kzo9I	GATC	3 cut(s)	244, 453, 1069
LguI	GCTCTTC	2 cut(s)	947, 1110
LmnI	GCTCC	3 cut(s)	443, 688, 1001
Lsp1109I	GCAGC	4 cut(s)	553, 824, 944, 991
LweI	GCATC	9 cut(s)	55, 350, 365, 526, 604, 650, 686, 900, 1039
MaeI	CTAG	1 cut(s)	467
MaeII	ACGT	4 cut(s)	430, 706, 842, 1063
MaeIII	GTNAC	3 cut(s)	13, 333, 930
MalI	GATC	3 cut(s)	246, 455, 1071
MboI	GATC	3 cut(s)	244, 453, 1069
MboII	GAAGA	6 cut(s)	254, 601, 620, 812, 964, 1127
MfeI	CAATTG	2 cut(s)	215, 824
MhlI	GDGCHC	1 cut(s)	448
MluCI	AATT	8 cut(s)	54, 93, 139, 215, 375, 737, 824, 1185
MlyI	GAGTC	4 cut(s)	47, 71, 128, 229
MmeI	TCCRAC	1 cut(s)	710
MnlI	CCTC	8 cut(s)	208, 294, 598, 640, 736, 757, 802, 894
MseI	TTAA	5 cut(s)	348, 522, 819, 839, 1077
MslI	CAYNNNNRTG	1 cut(s)	600
MspA1I	CMGCKG	4 cut(s)	301, 403, 514, 815
MspR9I	CCNGG	1 cut(s)	664
MunI	CAATTG	2 cut(s)	215, 824
Mva1269I	GAATGC	1 cut(s)	188
MvaI	CCWGG	1 cut(s)	664
MvnI	CGCG	3 cut(s)	339, 403, 514
MwoI	GCNNNNNNNGC	3 cut(s)	541, 764, 1013
NdeI	CATATG	2 cut(s)	124, 1176
NdeII	GATC	3 cut(s)	244, 453, 1069
NlaIII	CATG	3 cut(s)	31, 110, 878
NlaIV	GGNNCC	2 cut(s)	49, 561
NmuCI	GTSAC	2 cut(s)	333, 930
NspV	TTCGAA	1 cut(s)	1084
PaeR7I	CTCGAG	2 cut(s)	502, 761
PciSI	GCTCTTC	2 cut(s)	947, 1110
PctI	GAATGC	1 cut(s)	188
PfeI	GAWTC	3 cut(s)	305, 327, 1193
PflMI	CCANNNNNTGG	1 cut(s)	941
PfoI	TCCNGGA	1 cut(s)	662
PkrI	GCNGC	6 cut(s)	405, 516, 543, 814, 959, 1006
PleI	GAGTC	4 cut(s)	46, 71, 127, 228
PpsI	GAGTC	4 cut(s)	46, 71, 127, 228
Psp124BI	GAGCTC	1 cut(s)	448
Psp1406I	AACGTT	1 cut(s)	842
Psp6I	CCWGG	1 cut(s)	662
PspGI	CCWGG	1 cut(s)	662
PspN4I	GGNNCC	2 cut(s)	49, 561
PspPI	GGNCC	4 cut(s)	660, 792, 881, 1010
PspXI	VCTCGAGB	2 cut(s)	502, 761
PstI	CTGCAG	1 cut(s)	962
PvuII	CAGCTG	1 cut(s)	815
RsaI	GTAC	2 cut(s)	465, 561
RsaNI	GTAC	2 cut(s)	464, 560
RseI	CAYNNNNRTG	1 cut(s)	600
SacI	GAGCTC	1 cut(s)	448
SacII	CCGCGG	2 cut(s)	404, 515
SapI	GCTCTTC	2 cut(s)	947, 1110
SaqAI	TTAA	5 cut(s)	348, 522, 819, 839, 1077
SatI	GCNGC	6 cut(s)	404, 515, 542, 813, 958, 1005
Sau3AI	GATC	3 cut(s)	244, 453, 1069
Sau96I	GGNCC	4 cut(s)	660, 792, 881, 1010
SchI	GAGTC	4 cut(s)	47, 71, 128, 229
ScrFI	CCNGG	1 cut(s)	664
SduI	GDGCHC	1 cut(s)	448
SfaNI	GCATC	9 cut(s)	55, 350, 365, 526, 604, 650, 686, 900, 1039
SfcI	CTRYAG	3 cut(s)	189, 633, 958
Sfr274I	CTCGAG	2 cut(s)	502, 761
Sfr303I	CCGCGG	2 cut(s)	404, 515
SfuI	TTCGAA	1 cut(s)	1084
SgrBI	CCGCGG	2 cut(s)	404, 515
SinI	GGWCC	4 cut(s)	660, 792, 881, 1010
SlaI	CTCGAG	2 cut(s)	502, 761
SmiMI	CAYNNNNRTG	1 cut(s)	600
SmlI	CTYRAG	2 cut(s)	502, 761
SmoI	CTYRAG	2 cut(s)	502, 761
Sse9I	AATT	8 cut(s)	54, 93, 139, 215, 375, 737, 824, 1185
SsiI	CCGC	6 cut(s)	301, 401, 403, 441, 512, 514
SspMI	CTAG	1 cut(s)	467
SstI	GAGCTC	1 cut(s)	448
StyD4I	CCNGG	1 cut(s)	662
StyI	CCWWGG	4 cut(s)	414, 563, 795, 940
TaaI	ACNGT	4 cut(s)	637, 673, 970, 1028
TaiI	ACGT	4 cut(s)	433, 709, 845, 1066
TaqI	TCGA	4 cut(s)	448, 503, 762, 1084
TaqII	GACCGA	1 cut(s)	466
TasI	AATT	8 cut(s)	54, 93, 139, 215, 375, 737, 824, 1185
TatI	WGTACW	1 cut(s)	463
TauI	GCSGC	2 cut(s)	406, 517
TfiI	GAWTC	3 cut(s)	305, 327, 1193
Tru1I	TTAA	5 cut(s)	348, 522, 819, 839, 1077
Tru9I	TTAA	5 cut(s)	348, 522, 819, 839, 1077
TscAI	CASTG	5 cut(s)	160, 463, 678, 967, 1102
TseFI	GTSAC	2 cut(s)	333, 930
TseI	GCWGC	4 cut(s)	541, 812, 957, 1004
Tsp45I	GTSAC	2 cut(s)	333, 930
TspDTI	ATGAA	3 cut(s)	186, 243, 717
TspGWI	ACGGA	1 cut(s)	1104
TspRI	CASTG	5 cut(s)	160, 463, 678, 967, 1102
Van91I	CCANNNNNTGG	1 cut(s)	941
VpaK11BI	GGWCC	4 cut(s)	660, 792, 881, 1010
XapI	RAATTY	2 cut(s)	93, 139
XcmI	CCANNNNNNNNNTGG	1 cut(s)	670
XhoI	CTCGAG	2 cut(s)	502, 761
XspI	CTAG	1 cut(s)	467

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.