Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000003

Orthogroup ID

OG0008351

Physical Location & Seq

Genomic Coordinates Forward (+)

38422099 .. 38422398

Gene Structure 300 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug03G0331100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 300 bp

ATGGCCAAGCCCAACGGAGAGGTCCGCCGTGCTCCGAATAGGGATCCGGACCGGGGCTTGATAATGGCCTTCAAAACCATCGAGACCATGTGTGATAGGTTAGGCCTTGTTTGCACCATCAAGAACCGGGCAAATGAGGTGTACAAGACTCTGGAAGATCATAAGTGTAGCAAGGGAAGAAACCAAGATGCATTATTGGCTGCTTGCCTATACATTGCTTGTAAACAAGAAGACAAGCCCAGAACTCTCAAGGAAATCTTCTCCGTCGCGAATGGAGCCTCAAAGAAAGAGATTTGGTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000902 GO:0001558 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0008017 GO:0008092 GO:0008150 GO:0009653 GO:0009826 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0016049 GO:0022603 GO:0022604 GO:0030308 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032502 GO:0032989 GO:0040007 GO:0040008 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045926 GO:0048519 GO:0048523 GO:0048589 GO:0048638 GO:0048640 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051510 GO:0051511 GO:0055028 GO:0060560 GO:0065007 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

99

Amino Acids

11.2

Weight (kDa)

9.22

Isoelectric Point (pI)

41.77

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TFIIB	PF00382	17 - 91	1.3e-20	Transcription factor TFIIB repeat

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0008351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23090 AT3G23090 AT3G23090 AT3G23090 AT3G23090
fragaria_vesca	FvH4_4g02740 FvH4_4g02740 FvH4_4g02740
malus_domestica	MD13G1207700.v1.1 MD16G1209200.v1.1
prunus_persica	Prupe.1G031100_v2.0.a1 Prupe.1G031100_v2.0.a1
pyrus_communis	pycom13g17990 pycom16g17650
rosa_chinensis	RchiOBHm_Chr4g0390601
rosa_laevigata	RLG00000009915
rosa_multiflora	Rmu_sc0001380.1_g000010
rosa_roxburghii	Rroxscaffold_5G00336540
rosa_rugosa	Rorug03G0331100
rosa_samantha	Rh4AG032600 Rh4BG026700 Rh4CG036400 Rh4DG029400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccII	CGCG	1 cut(s)	269
AccIII	TCCGGA	1 cut(s)	46
AciI	CCGC	1 cut(s)	25
AclWI	GGATC	2 cut(s)	38, 51
AcoI	YGGCCR	1 cut(s)	3
AfaI	GTAC	1 cut(s)	143
AfiI	CCNNNNNNNGG	1 cut(s)	53
AgsI	TTSAA	1 cut(s)	73
Alw21I	GWGCWC	1 cut(s)	34
Alw26I	GTCTC	1 cut(s)	77
AlwI	GGATC	2 cut(s)	38, 51
Aor13HI	TCCGGA	1 cut(s)	46
AoxI	GGCC	3 cut(s)	3, 66, 103
ApeKI	GCWGC	1 cut(s)	200
AspS9I	GGNCC	2 cut(s)	22, 49
AsuC2I	CCSGG	2 cut(s)	53, 128
AvaII	GGWCC	2 cut(s)	22, 49
BalI	TGGCCA	1 cut(s)	5
BamHI	GGATCC	1 cut(s)	43
BbsI	GAAGAC	1 cut(s)	237
Bbv12I	GWGCWC	1 cut(s)	34
BbvI	GCAGC	1 cut(s)	187
BccI	CCATC	2 cut(s)	86, 125
BceAI	ACGGC	1 cut(s)	12
BcnI	CCSGG	2 cut(s)	53, 128
BcoDI	GTCTC	1 cut(s)	77
BisI	GCNGC	1 cut(s)	201
BlsI	GCNGC	1 cut(s)	202
Bme1390I	CCNGG	2 cut(s)	53, 128
Bme18I	GGWCC	2 cut(s)	22, 49
BmgT120I	GGNCC	2 cut(s)	22, 49
BmiI	GGNNCC	2 cut(s)	45, 277
BmrFI	CCNGG	2 cut(s)	53, 128
BmsI	GCATC	1 cut(s)	178
BpiI	GAAGAC	1 cut(s)	237
BpuEI	CTTGAG	1 cut(s)	233
BpuMI	CCSGG	2 cut(s)	53, 128
BsaI	GGTCTC	1 cut(s)	77
BsaJI	CCNNGG	1 cut(s)	52
BsaWI	WCCGGW	1 cut(s)	46
Bsc4I	CCNNNNNNNGG	1 cut(s)	53
Bse3DI	GCAATG	1 cut(s)	213
BseAI	TCCGGA	1 cut(s)	46
BseDI	CCNNGG	1 cut(s)	52
BseLI	CCNNNNNNNGG	1 cut(s)	53
BseMI	GCAATG	1 cut(s)	213
BseXI	GCAGC	1 cut(s)	187
Bsh1236I	CGCG	1 cut(s)	269
BshFI	GGCC	3 cut(s)	5, 68, 105
BsiHKAI	GWGCWC	1 cut(s)	34
BsiSI	CCGG	3 cut(s)	47, 52, 127
BslI	CCNNNNNNNGG	1 cut(s)	53
BsmAI	GTCTC	1 cut(s)	77
BsnI	GGCC	3 cut(s)	5, 68, 105
Bso31I	GGTCTC	1 cut(s)	77
Bsp1286I	GDGCHC	1 cut(s)	34
Bsp13I	TCCGGA	1 cut(s)	46
Bsp1407I	TGTACA	1 cut(s)	141
Bsp143I	GATC	2 cut(s)	43, 157
Bsp68I	TCGCGA	1 cut(s)	269
BspACI	CCGC	1 cut(s)	25
BspANI	GGCC	3 cut(s)	5, 68, 105
BspEI	TCCGGA	1 cut(s)	46
BspFNI	CGCG	1 cut(s)	269
BspLI	GGNNCC	2 cut(s)	45, 277
BspPI	GGATC	2 cut(s)	38, 51
BspTNI	GGTCTC	1 cut(s)	77
BsrDI	GCAATG	1 cut(s)	213
BsrGI	TGTACA	1 cut(s)	141
BssECI	CCNNGG	1 cut(s)	52
BssMI	GATC	2 cut(s)	43, 157
BstAUI	TGTACA	1 cut(s)	141
BstC8I	GCNNGC	1 cut(s)	205
BstFNI	CGCG	1 cut(s)	269
BstKTI	GATC	2 cut(s)	46, 160
BstMAI	GTCTC	1 cut(s)	77
BstMBI	GATC	2 cut(s)	43, 157
BstMWI	GCNNNNNNNGC	3 cut(s)	111, 197, 275
BstSCI	CCNGG	2 cut(s)	51, 126
BstUI	CGCG	1 cut(s)	269
BstV1I	GCAGC	1 cut(s)	187
BstV2I	GAAGAC	1 cut(s)	237
BstX2I	RGATCY	1 cut(s)	43
BstYI	RGATCY	1 cut(s)	43
BsuRI	GGCC	3 cut(s)	5, 68, 105
BtuMI	TCGCGA	1 cut(s)	269
Cac8I	GCNNGC	1 cut(s)	205
Cfr13I	GGNCC	2 cut(s)	22, 49
CpoI	CGGWCCG	1 cut(s)	49
Csp6I	GTAC	1 cut(s)	142
CspI	CGGWCCG	1 cut(s)	49
CviAII	CATG	1 cut(s)	88
CviJI	RGCY	8 cut(s)	5, 10, 57, 68, 105, 200, 238, 278
CviKI_1	RGCY	8 cut(s)	5, 10, 57, 68, 105, 200, 238, 278
CviQI	GTAC	1 cut(s)	142
DpnI	GATC	2 cut(s)	45, 159
DpnII	GATC	2 cut(s)	43, 157
EaeI	YGGCCR	1 cut(s)	3
EciI	GGCGGA	1 cut(s)	14
Eco147I	AGGCCT	1 cut(s)	105
Eco31I	GGTCTC	1 cut(s)	77
Eco47I	GGWCC	2 cut(s)	22, 49
EcoT22I	ATGCAT	1 cut(s)	193
FaeI	CATG	1 cut(s)	91
FaiI	YATR	3 cut(s)	89, 162, 211
FalI	AAGNNNNNCTT	2 cut(s)	242, 274
FatI	CATG	1 cut(s)	87
Fnu4HI	GCNGC	1 cut(s)	201
Fsp4HI	GCNGC	1 cut(s)	201
GluI	GCNGC	1 cut(s)	201
HaeIII	GGCC	3 cut(s)	5, 68, 105
HapII	CCGG	3 cut(s)	47, 52, 127
Hin1II	CATG	1 cut(s)	91
HinfI	GANTC	1 cut(s)	148
HpaII	CCGG	3 cut(s)	47, 52, 127
Hpy166II	GTNNAC	2 cut(s)	142, 224
Hpy188I	TCNGA	1 cut(s)	36
Hpy188III	TCNNGA	5 cut(s)	47, 82, 121, 152, 268
Hpy8I	GTNNAC	2 cut(s)	142, 224
Hpy99I	CGWCG	1 cut(s)	269
HpyAV	CCTTC	1 cut(s)	79
HpyCH4V	TGCA	2 cut(s)	114, 191
HpyF10VI	GCNNNNNNNGC	3 cut(s)	111, 197, 275
Hsp92II	CATG	1 cut(s)	91
Kpn2I	TCCGGA	1 cut(s)	46
Kzo9I	GATC	2 cut(s)	43, 157
LmnI	GCTCC	2 cut(s)	37, 275
LpnPI	CCDG	5 cut(s)	60, 65, 137, 140, 253
Lsp1109I	GCAGC	1 cut(s)	187
LweI	GCATC	1 cut(s)	178
MalI	GATC	2 cut(s)	45, 159
MboI	GATC	2 cut(s)	43, 157
MboII	GAAGA	4 cut(s)	167, 189, 242, 250
MflI	RGATCY	1 cut(s)	43
MhlI	GDGCHC	1 cut(s)	34
MlsI	TGGCCA	1 cut(s)	5
MluNI	TGGCCA	1 cut(s)	5
MlyI	GAGTC	1 cut(s)	142
MnlI	CCTC	3 cut(s)	13, 130, 289
Mox20I	TGGCCA	1 cut(s)	5
Mph1103I	ATGCAT	1 cut(s)	193
MroI	TCCGGA	1 cut(s)	46
MscI	TGGCCA	1 cut(s)	5
Msp20I	TGGCCA	1 cut(s)	5
MspI	CCGG	3 cut(s)	47, 52, 127
MspR9I	CCNGG	2 cut(s)	53, 128
MvnI	CGCG	1 cut(s)	269
MwoI	GCNNNNNNNGC	3 cut(s)	111, 197, 275
NciI	CCSGG	2 cut(s)	53, 128
NdeII	GATC	2 cut(s)	43, 157
NlaIII	CATG	1 cut(s)	91
NlaIV	GGNNCC	2 cut(s)	45, 277
NruI	TCGCGA	1 cut(s)	269
NsiI	ATGCAT	1 cut(s)	193
PceI	AGGCCT	1 cut(s)	105
PkrI	GCNGC	1 cut(s)	202
PleI	GAGTC	1 cut(s)	142
PpsI	GAGTC	1 cut(s)	142
PspN4I	GGNNCC	2 cut(s)	45, 277
PspPI	GGNCC	2 cut(s)	22, 49
PsuI	RGATCY	1 cut(s)	43
RruI	TCGCGA	1 cut(s)	269
RsaI	GTAC	1 cut(s)	143
RsaNI	GTAC	1 cut(s)	142
Rsr2I	CGGWCCG	1 cut(s)	49
RsrII	CGGWCCG	1 cut(s)	49
SatI	GCNGC	1 cut(s)	201
Sau3AI	GATC	2 cut(s)	43, 157
Sau96I	GGNCC	2 cut(s)	22, 49
SchI	GAGTC	1 cut(s)	142
ScrFI	CCNGG	2 cut(s)	53, 128
SduI	GDGCHC	1 cut(s)	34
SetI	ASST	3 cut(s)	24, 101, 141
SfaNI	GCATC	1 cut(s)	178
SinI	GGWCC	2 cut(s)	22, 49
SmlI	CTYRAG	1 cut(s)	248
SmoI	CTYRAG	1 cut(s)	248
SseBI	AGGCCT	1 cut(s)	105
SsiI	CCGC	1 cut(s)	25
StuI	AGGCCT	1 cut(s)	105
StyD4I	CCNGG	2 cut(s)	51, 126
TaqI	TCGA	1 cut(s)	81
TatI	WGTACW	1 cut(s)	141
TseI	GCWGC	1 cut(s)	200
TspGWI	ACGGA	2 cut(s)	30, 253
VpaK11BI	GGWCC	2 cut(s)	22, 49
Zsp2I	ATGCAT	1 cut(s)	193

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.