Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr13

Orthogroup ID

OG0008351

Physical Location & Seq

Genomic Coordinates Reverse (-)

19040472 .. 19044294

Gene Structure 3823 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD13G1207700.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 924 bp

ATGCTTTTCTGTATTGCAAGTGTAATAGGGATGGAAGTTACACATATCTGCGTGGACAAGGAATCAGAAAGTGTCACAAACCATTCAGGTCTTTCTCACCAGACTGTGGAGAAGGTTCAACTGGATTCCGGGAAAACAAAGGTTACTAGTACGTCACTTGCATCTGTAAAACATGCATCAAAACCTGCTGCTGGAAATGCTGGAACAAAACACACTGTTCCACAGCCATTTACCTTAGCTACAGAAAAGCGTGCTTCATGTGGAACTCGTCTAGTCAGTGTTGCTCTTAATTGCGGTAATGGTGTTTATAAATTATCCAATACAAGCGATCTGCGACATTTTAATACCACAAAGCATAACCAGCCAATATCACCGTTGGTACGAAGGAAGCCATTGCAACCAGATAAGAAGAAGCATTCTGATGAGGAAGATTCCTGTTCTGTAGCTTCCATCACAGTAGCATCTGCACGAACTCTTAGGTTCAGAGAAACTGTTGCATCTGCTCCAACGTTAAGATGCACTGAGCGTGCGAAGAAAAGGAAGGAGTTTTATTCAAGGTTAGAGGAGAAGCACCAAGCACTGGAGGTGCAAACAACTAAACGTGATGCAAGGACCAAGGAAGAGGAGGAGGCAGCTATCAAGCAACTGAGAAAGAGTTTAGCATTTAAGGCAAACCCGATGCCAAGCTTCTATCATGAGGGACCTCCACCTAAAACTGAACTTACAAAGCTGCCACCAACTCGTGCAAAATCACCAAAGCTTGGCCGGAGGATGAGCTGCAGCAGCACATCCGAAGTATCCCGAGGAGACAGAATGAAAGGAAATCATCACAGTATGGGTAGTTACAAAGAAGGCACCGCTTATGTTGGTTCCCTGAAAAGCGAGGGTCAGATCAACATCCAAAATGGCAATGCTGTTTGCTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000902 GO:0001558 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0008017 GO:0008092 GO:0008150 GO:0009653 GO:0009826 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0016049 GO:0022603 GO:0022604 GO:0030308 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032502 GO:0032989 GO:0040007 GO:0040008 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045926 GO:0048519 GO:0048523 GO:0048589 GO:0048638 GO:0048640 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051510 GO:0051511 GO:0055028 GO:0060560 GO:0065007 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

308

Amino Acids

33.69

Weight (kDa)

9.73

Isoelectric Point (pI)

48.04

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPX2	PF06886	170 - 242	2.2e-25	Targeting protein for Xklp2 (TPX2) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23090 AT3G23090 AT3G23090 AT3G23090 AT3G23090
fragaria_vesca	FvH4_4g02740 FvH4_4g02740 FvH4_4g02740
malus_domestica	MD13G1207700.v1.1 MD16G1209200.v1.1
prunus_persica	Prupe.1G031100_v2.0.a1 Prupe.1G031100_v2.0.a1
pyrus_communis	pycom13g17990 pycom16g17650
rosa_chinensis	RchiOBHm_Chr4g0390601
rosa_laevigata	RLG00000009915
rosa_multiflora	Rmu_sc0001380.1_g000010
rosa_roxburghii	Rroxscaffold_5G00336540
rosa_rugosa	Rorug03G0331100
rosa_samantha	Rh4AG032600 Rh4BG026700 Rh4CG036400 Rh4DG029400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	309
Acc36I	ACCTGC	1 cut(s)	193
AccB1I	GGYRCC	1 cut(s)	854
AccB7I	CCANNNNNTGG	3 cut(s)	106, 580, 761
AciI	CCGC	2 cut(s)	294, 858
AclI	AACGTT	1 cut(s)	509
AcoI	YGGCCR	1 cut(s)	763
AfaI	GTAC	2 cut(s)	151, 381
AfiI	CCNNNNNNNGG	4 cut(s)	106, 191, 580, 761
AgsI	TTSAA	2 cut(s)	119, 555
AhlI	ACTAGT	1 cut(s)	146
AluBI	AGCT	7 cut(s)	239, 446, 635, 687, 730, 760, 777
AluI	AGCT	7 cut(s)	239, 446, 635, 687, 730, 760, 777
Alw26I	GTCTC	1 cut(s)	801
Ama87I	CYCGRG	1 cut(s)	801
AoxI	GGCC	1 cut(s)	763
ApeKI	GCWGC	6 cut(s)	188, 632, 730, 777, 780, 783
AspS9I	GGNCC	2 cut(s)	612, 701
AsuC2I	CCSGG	1 cut(s)	130
AsuHPI	GGTGA	3 cut(s)	89, 363, 744
AvaI	CYCGRG	1 cut(s)	801
AvaII	GGWCC	2 cut(s)	612, 701
BanI	GGYRCC	1 cut(s)	854
BauI	CACGAG	1 cut(s)	741
BbvI	GCAGC	6 cut(s)	175, 644, 717, 764, 792, 795
BccI	CCATC	2 cut(s)	25, 458
BciVI	GTATCC	1 cut(s)	808
BcnI	CCSGG	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	801
BcuI	ACTAGT	1 cut(s)	146
BfaI	CTAG	3 cut(s)	147, 272, 922
BfmI	CTRYAG	3 cut(s)	240, 441, 778
BfuAI	ACCTGC	1 cut(s)	193
BfuI	GTATCC	1 cut(s)	808
BisI	GCNGC	6 cut(s)	189, 633, 731, 778, 781, 784
BlsI	GCNGC	6 cut(s)	190, 634, 732, 779, 782, 785
Bme1390I	CCNGG	1 cut(s)	130
Bme18I	GGWCC	2 cut(s)	612, 701
BmeT110I	CYCGRG	1 cut(s)	801
BmgT120I	GGNCC	2 cut(s)	612, 701
BmiI	GGNNCC	3 cut(s)	702, 856, 871
BmrFI	CCNGG	1 cut(s)	130
BmsI	GCATC	7 cut(s)	170, 185, 470, 506, 506, 595, 669
BpmI	CTGGAG	1 cut(s)	602
Bpu10I	CCTNAGC	1 cut(s)	235
BpuMI	CCSGG	1 cut(s)	130
BsaBI	GATNNNNATC	1 cut(s)	896
BsaJI	CCNNGG	2 cut(s)	615, 802
Bsc4I	CCNNNNNNNGG	4 cut(s)	106, 191, 580, 761
Bse1I	ACTGG	2 cut(s)	126, 585
Bse3DI	GCAATG	2 cut(s)	392, 916
Bse8I	GATNNNNATC	1 cut(s)	896
BseDI	CCNNGG	2 cut(s)	615, 802
BseGI	GGATG	4 cut(s)	36, 777, 788, 897
BseJI	GATNNNNATC	1 cut(s)	896
BseLI	CCNNNNNNNGG	4 cut(s)	106, 191, 580, 761
BseMI	GCAATG	2 cut(s)	392, 916
BseMII	CTCAG	2 cut(s)	513, 638
BseNI	ACTGG	2 cut(s)	126, 585
BseRI	GAGGAG	4 cut(s)	578, 638, 641, 819
BseXI	GCAGC	6 cut(s)	175, 644, 717, 764, 792, 795
BsgI	GTGCAG	1 cut(s)	450
BshFI	GGCC	1 cut(s)	765
BshNI	GGYRCC	1 cut(s)	854
BsiHKCI	CYCGRG	1 cut(s)	801
BsiSI	CCGG	2 cut(s)	129, 766
BslFI	GGGAC	1 cut(s)	714
BslI	CCNNNNNNNGG	4 cut(s)	106, 191, 580, 761
BsmAI	GTCTC	1 cut(s)	801
BsmFI	GGGAC	1 cut(s)	714
BsmI	GAATGC	1 cut(s)	415
BsnI	GGCC	1 cut(s)	765
BsoBI	CYCGRG	1 cut(s)	801
Bsp143I	GATC	2 cut(s)	328, 891
BspACI	CCGC	2 cut(s)	294, 858
BspANI	GGCC	1 cut(s)	765
BspCNI	CTCAG	2 cut(s)	514, 639
BspHI	TCATGA	1 cut(s)	694
BspLI	GGNNCC	3 cut(s)	702, 856, 871
BspMAI	CTGCAG	1 cut(s)	782
BspMI	ACCTGC	1 cut(s)	193
BspT107I	GGYRCC	1 cut(s)	854
BsrDI	GCAATG	2 cut(s)	392, 916
BsrI	ACTGG	2 cut(s)	126, 585
BssECI	CCNNGG	2 cut(s)	615, 802
BssMI	GATC	2 cut(s)	328, 891
BssSI	CACGAG	1 cut(s)	741
BssT1I	CCWWGG	1 cut(s)	615
Bst2BI	CACGAG	1 cut(s)	741
Bst4CI	ACNGT	6 cut(s)	106, 217, 375, 457, 493, 833
Bst6I	CTCTTC	1 cut(s)	615
BstC8I	GCNNGC	2 cut(s)	252, 528
BstDEI	CTNAG	4 cut(s)	235, 476, 522, 647
BstF5I	GGATG	4 cut(s)	36, 777, 788, 897
BstKTI	GATC	2 cut(s)	331, 894
BstMAI	GTCTC	1 cut(s)	801
BstMBI	GATC	2 cut(s)	328, 891
BstMWI	GCNNNNNNNGC	4 cut(s)	197, 361, 668, 783
BstNSI	RCATGY	1 cut(s)	176
BstSCI	CCNGG	1 cut(s)	128
BstSFI	CTRYAG	3 cut(s)	240, 441, 778
BstV1I	GCAGC	6 cut(s)	175, 644, 717, 764, 792, 795
BsuI	GTATCC	1 cut(s)	808
BsuRI	GGCC	1 cut(s)	765
BtsCI	GGATG	4 cut(s)	36, 777, 788, 897
BtsIMutI	CAGTG	4 cut(s)	213, 283, 519, 578
BveI	ACCTGC	1 cut(s)	193
Cac8I	GCNNGC	2 cut(s)	252, 528
CciI	TCATGA	1 cut(s)	694
Cfr13I	GGNCC	2 cut(s)	612, 701
Csp6I	GTAC	2 cut(s)	150, 380
CviAII	CATG	3 cut(s)	173, 258, 695
CviQI	GTAC	2 cut(s)	150, 380
DdeI	CTNAG	4 cut(s)	235, 476, 522, 647
DpnI	GATC	2 cut(s)	330, 893
DpnII	GATC	2 cut(s)	328, 891
EaeI	YGGCCR	1 cut(s)	763
Eam1104I	CTCTTC	1 cut(s)	615
EarI	CTCTTC	1 cut(s)	615
Eco130I	CCWWGG	1 cut(s)	615
Eco47I	GGWCC	2 cut(s)	612, 701
Eco88I	CYCGRG	1 cut(s)	801
EcoO109I	RGGNCCY	1 cut(s)	701
EcoT14I	CCWWGG	1 cut(s)	615
EcoT22I	ATGCAT	1 cut(s)	178
ErhI	CCWWGG	1 cut(s)	615
FaeI	CATG	3 cut(s)	176, 261, 698
FaiI	YATR	8 cut(s)	45, 174, 259, 309, 357, 696, 836, 864
FaqI	GGGAC	1 cut(s)	714
FatI	CATG	3 cut(s)	172, 257, 694
Fnu4HI	GCNGC	6 cut(s)	189, 633, 731, 778, 781, 784
FokI	GGATG	4 cut(s)	43, 775, 784, 884
Fsp4HI	GCNGC	6 cut(s)	189, 633, 731, 778, 781, 784
FspBI	CTAG	3 cut(s)	147, 272, 922
GluI	GCNGC	6 cut(s)	189, 633, 731, 778, 781, 784
GsuI	CTGGAG	1 cut(s)	602
HaeIII	GGCC	1 cut(s)	765
HapII	CCGG	2 cut(s)	129, 766
Hin1II	CATG	3 cut(s)	176, 261, 698
HindIII	AAGCTT	2 cut(s)	685, 758
HinfI	GANTC	3 cut(s)	62, 125, 431
HpaII	CCGG	2 cut(s)	129, 766
HphI	GGTGA	3 cut(s)	89, 363, 744
Hpy166II	GTNNAC	1 cut(s)	55
Hpy188I	TCNGA	5 cut(s)	67, 421, 485, 793, 891
Hpy188III	TCNNGA	2 cut(s)	695, 801
Hpy8I	GTNNAC	1 cut(s)	55
HpyAV	CCTTC	4 cut(s)	106, 378, 535, 845
HpyCH4III	ACNGT	6 cut(s)	106, 217, 375, 457, 493, 833
HpyCH4IV	ACGT	3 cut(s)	152, 509, 601
HpyF10VI	GCNNNNNNNGC	4 cut(s)	197, 361, 668, 783
HpyF3I	CTNAG	4 cut(s)	235, 476, 522, 647
HpySE526I	ACGT	3 cut(s)	152, 509, 601
Hsp92II	CATG	3 cut(s)	176, 261, 698
Kzo9I	GATC	2 cut(s)	328, 891
LmnI	GCTCC	1 cut(s)	508
Lsp1109I	GCAGC	6 cut(s)	175, 644, 717, 764, 792, 795
LweI	GCATC	7 cut(s)	170, 185, 470, 506, 506, 595, 669
MaeI	CTAG	3 cut(s)	147, 272, 922
MaeII	ACGT	3 cut(s)	152, 509, 601
MaeIII	GTNAC	5 cut(s)	37, 73, 142, 153, 842
MalI	GATC	2 cut(s)	330, 893
MboI	GATC	2 cut(s)	328, 891
MboII	GAAGA	4 cut(s)	421, 440, 544, 632
MluCI	AATT	2 cut(s)	289, 311
MmeI	TCCRAC	1 cut(s)	530
Mph1103I	ATGCAT	1 cut(s)	178
MseI	TTAA	4 cut(s)	288, 342, 512, 666
MslI	CAYNNNNRTG	1 cut(s)	420
MspI	CCGG	2 cut(s)	129, 766
MspR9I	CCNGG	1 cut(s)	130
Mva1269I	GAATGC	1 cut(s)	415
MwoI	GCNNNNNNNGC	4 cut(s)	197, 361, 668, 783
NciI	CCSGG	1 cut(s)	130
NdeII	GATC	2 cut(s)	328, 891
NlaIII	CATG	3 cut(s)	176, 261, 698
NlaIV	GGNNCC	3 cut(s)	702, 856, 871
NmuCI	GTSAC	2 cut(s)	73, 153
NsiI	ATGCAT	1 cut(s)	178
NspI	RCATGY	1 cut(s)	176
PagI	TCATGA	1 cut(s)	694
PctI	GAATGC	1 cut(s)	415
PfeI	GAWTC	3 cut(s)	62, 125, 431
PflMI	CCANNNNNTGG	3 cut(s)	106, 580, 761
PfoI	TCCNGGA	1 cut(s)	128
PkrI	GCNGC	6 cut(s)	190, 634, 732, 779, 782, 785
PpuMI	RGGWCCY	1 cut(s)	701
PsiI	TTATAA	1 cut(s)	309
Psp1406I	AACGTT	1 cut(s)	509
Psp5II	RGGWCCY	1 cut(s)	701
PspN4I	GGNNCC	3 cut(s)	702, 856, 871
PspPI	GGNCC	2 cut(s)	612, 701
PspPPI	RGGWCCY	1 cut(s)	701
PstI	CTGCAG	1 cut(s)	782
RsaI	GTAC	2 cut(s)	151, 381
RsaNI	GTAC	2 cut(s)	150, 380
RseI	CAYNNNNRTG	1 cut(s)	420
SaqAI	TTAA	4 cut(s)	288, 342, 512, 666
SatI	GCNGC	6 cut(s)	189, 633, 731, 778, 781, 784
Sau3AI	GATC	2 cut(s)	328, 891
Sau96I	GGNCC	2 cut(s)	612, 701
ScrFI	CCNGG	1 cut(s)	130
SfaNI	GCATC	7 cut(s)	170, 185, 470, 506, 506, 595, 669
SfcI	CTRYAG	3 cut(s)	240, 441, 778
SinI	GGWCC	2 cut(s)	612, 701
SmiMI	CAYNNNNRTG	1 cut(s)	420
SpeI	ACTAGT	1 cut(s)	146
Sse9I	AATT	2 cut(s)	289, 311
SsiI	CCGC	2 cut(s)	294, 858
SspMI	CTAG	3 cut(s)	147, 272, 922
StyD4I	CCNGG	1 cut(s)	128
StyI	CCWWGG	1 cut(s)	615
TaaI	ACNGT	6 cut(s)	106, 217, 375, 457, 493, 833
TaiI	ACGT	3 cut(s)	155, 512, 604
TasI	AATT	2 cut(s)	289, 311
TfiI	GAWTC	3 cut(s)	62, 125, 431
Tru1I	TTAA	4 cut(s)	288, 342, 512, 666
Tru9I	TTAA	4 cut(s)	288, 342, 512, 666
TscAI	CASTG	4 cut(s)	220, 283, 526, 585
TseFI	GTSAC	2 cut(s)	73, 153
TseI	GCWGC	6 cut(s)	188, 632, 730, 777, 780, 783
Tsp45I	GTSAC	2 cut(s)	73, 153
TspDTI	ATGAA	2 cut(s)	246, 830
TspRI	CASTG	4 cut(s)	220, 283, 526, 585
Van91I	CCANNNNNTGG	3 cut(s)	106, 580, 761
VpaK11BI	GGWCC	2 cut(s)	612, 701
XceI	RCATGY	1 cut(s)	176
XspI	CTAG	3 cut(s)	147, 272, 922
Zsp2I	ATGCAT	1 cut(s)	178

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.