Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr13

Orthogroup ID

OG0008351

Physical Location & Seq

Genomic Coordinates Reverse (-)

13968847 .. 13970577

Gene Structure 1731 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom13g17990.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 996 bp

ATGATATTGTTACAATTGGGATGCTTTTTCTGTATTGCAAGTGTAATGGGGATGGAAGTTACAGATATCTGCATGGACAAGGAATCAGAAAGTGTCACAAACTATTCAGGTCTTTCTCATGATTCAAACCCTGAGGGAATTCCAGAATGTAGTGAAGATCAGAATGTAGTAAGGTCGGATTCAGATAATCACCAGACTGTGGAGAAGGTTCAACTGGATTCCGGGAAAACAAAGGTTACTAGTAAGTCACTTGCATCTGTAAAACATGCATCAAAACCTGCTGCTGGAAATGCTGGAACAAAACACACTGTTCCACAGCCATTTACCTTAGCTACTGAAAAGCGTGCTTCATGTGGAAATCGTCCAGTCAGTGTTGCTCTTAATTGCGGTAACGGTGTTAATAAATTATCCAATACAAGCGATCTGCGAATTCTTAATACCACAAAGCATAACCAGCCAATATCACCGTTGGTACGAAGGAAGCCATTGCAACCGGATAGGAAGAACCATTCTGATGAGGAAGATTCCTGTTCTGTTGCTTCCATCACAGTAGCATCTGCACGAACTCTTAAGTTCAGAGAAACTGTGGCATCTGCTCCAACGTTAAGATGCACTGAGCGTGCGAAGAAAAGGAAGGAGTTTTATTCAAGGTTAAAGGAGAAGCACCAAGCACTGGAGGTGCAAAAAACTAAACGTGATGCAAGGACCAAGGAAGAGGAGGAGGCAGCTATCAAGCAACTGAGAAAGAGTTTAGCGTTTAAGGCAAACCTGATGCCAAGCTTCTATCACGAGGGACCTCCACCAAAAACTGAACTTACAAAGCTGCCACCAACTCGTGCAAAATCACCAAAGCTTGGCCGGAGGATGAGCTGCAGCAGCACATCCAAAGTATCCCGAGGAGACAGAATGAAAGGAAATCATCACAGTACGGCTAGTTACAAAGAAGGCATCGCTTATGTCGGTTCCATGAAAAGCGAGGATCAGATCAACATCTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000902 GO:0001558 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0008017 GO:0008092 GO:0008150 GO:0009653 GO:0009826 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0016049 GO:0022603 GO:0022604 GO:0030308 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032502 GO:0032989 GO:0040007 GO:0040008 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045926 GO:0048519 GO:0048523 GO:0048589 GO:0048638 GO:0048640 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051510 GO:0051511 GO:0055028 GO:0060560 GO:0065007 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

332

Amino Acids

36.47

Weight (kDa)

9.5

Isoelectric Point (pI)

54.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23090 AT3G23090 AT3G23090 AT3G23090 AT3G23090
fragaria_vesca	FvH4_4g02740 FvH4_4g02740 FvH4_4g02740
malus_domestica	MD13G1207700.v1.1 MD16G1209200.v1.1
prunus_persica	Prupe.1G031100_v2.0.a1 Prupe.1G031100_v2.0.a1
pyrus_communis	pycom13g17990 pycom16g17650
rosa_chinensis	RchiOBHm_Chr4g0390601
rosa_laevigata	RLG00000009915
rosa_multiflora	Rmu_sc0001380.1_g000010
rosa_roxburghii	Rroxscaffold_5G00336540
rosa_rugosa	Rorug03G0331100
rosa_samantha	Rh4AG032600 Rh4BG026700 Rh4CG036400 Rh4DG029400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	286
AccB7I	CCANNNNNTGG	3 cut(s)	199, 673, 854
AciI	CCGC	1 cut(s)	387
AclI	AACGTT	1 cut(s)	602
AclWI	GGATC	1 cut(s)	987
AcoI	YGGCCR	1 cut(s)	856
AcsI	RAATTY	2 cut(s)	138, 429
AfaI	GTAC	2 cut(s)	474, 928
AfiI	CCNNNNNNNGG	4 cut(s)	199, 284, 673, 854
AflII	CTTAAG	1 cut(s)	569
AgsI	TTSAA	3 cut(s)	126, 212, 648
AhlI	ACTAGT	1 cut(s)	239
AluBI	AGCT	6 cut(s)	332, 728, 780, 823, 853, 870
AluI	AGCT	6 cut(s)	332, 728, 780, 823, 853, 870
Alw26I	GTCTC	1 cut(s)	894
AlwI	GGATC	1 cut(s)	987
Ama87I	CYCGRG	1 cut(s)	894
AoxI	GGCC	1 cut(s)	856
ApeKI	GCWGC	6 cut(s)	281, 725, 823, 870, 873, 876
ApoI	RAATTY	2 cut(s)	138, 429
AspS9I	GGNCC	2 cut(s)	705, 794
AsuC2I	CCSGG	1 cut(s)	223
AsuHPI	GGTGA	3 cut(s)	182, 456, 837
AvaI	CYCGRG	1 cut(s)	894
AvaII	GGWCC	2 cut(s)	705, 794
AxyI	CCTNAGG	1 cut(s)	132
BauI	CACGAG	2 cut(s)	788, 834
BbvI	GCAGC	6 cut(s)	268, 737, 810, 857, 885, 888
BccI	CCATC	2 cut(s)	46, 551
BceAI	ACGGC	1 cut(s)	945
BciVI	GTATCC	1 cut(s)	901
BcnI	CCSGG	1 cut(s)	223
BcoDI	GTCTC	1 cut(s)	894
BcuI	ACTAGT	1 cut(s)	239
BfaI	CTAG	2 cut(s)	240, 933
BfmI	CTRYAG	1 cut(s)	871
BfrI	CTTAAG	1 cut(s)	569
BfuAI	ACCTGC	1 cut(s)	286
BfuI	GTATCC	1 cut(s)	901
BisI	GCNGC	6 cut(s)	282, 726, 824, 871, 874, 877
BlsI	GCNGC	6 cut(s)	283, 727, 825, 872, 875, 878
Bme1390I	CCNGG	1 cut(s)	223
Bme18I	GGWCC	2 cut(s)	705, 794
BmeT110I	CYCGRG	1 cut(s)	894
BmgT120I	GGNCC	2 cut(s)	705, 794
BmiI	GGNNCC	2 cut(s)	795, 964
BmrFI	CCNGG	1 cut(s)	223
BmsI	GCATC	9 cut(s)	11, 263, 278, 563, 599, 599, 688, 762, 957
BpmI	CTGGAG	1 cut(s)	695
Bpu10I	CCTNAGC	1 cut(s)	328
BpuMI	CCSGG	1 cut(s)	223
BsaBI	GATNNNNATC	1 cut(s)	989
BsaJI	CCNNGG	2 cut(s)	708, 895
BsaWI	WCCGGW	1 cut(s)	493
Bsc4I	CCNNNNNNNGG	4 cut(s)	199, 284, 673, 854
Bse1I	ACTGG	3 cut(s)	219, 365, 678
Bse21I	CCTNAGG	1 cut(s)	132
Bse3DI	GCAATG	1 cut(s)	485
Bse8I	GATNNNNATC	1 cut(s)	989
BseDI	CCNNGG	2 cut(s)	708, 895
BseGI	GGATG	4 cut(s)	26, 57, 870, 881
BseJI	GATNNNNATC	1 cut(s)	989
BseLI	CCNNNNNNNGG	4 cut(s)	199, 284, 673, 854
BseMI	GCAATG	1 cut(s)	485
BseMII	CTCAG	3 cut(s)	123, 606, 731
BseNI	ACTGG	3 cut(s)	219, 365, 678
BseRI	GAGGAG	3 cut(s)	731, 734, 912
BseXI	GCAGC	6 cut(s)	268, 737, 810, 857, 885, 888
BsgI	GTGCAG	1 cut(s)	543
BshFI	GGCC	1 cut(s)	858
BsiHKCI	CYCGRG	1 cut(s)	894
BsiSI	CCGG	3 cut(s)	222, 494, 859
BslFI	GGGAC	1 cut(s)	807
BslI	CCNNNNNNNGG	4 cut(s)	199, 284, 673, 854
BsmAI	GTCTC	1 cut(s)	894
BsmFI	GGGAC	1 cut(s)	807
BsnI	GGCC	1 cut(s)	858
BsoBI	CYCGRG	1 cut(s)	894
Bsp143I	GATC	4 cut(s)	157, 421, 979, 984
BspACI	CCGC	1 cut(s)	387
BspANI	GGCC	1 cut(s)	858
BspCNI	CTCAG	3 cut(s)	124, 607, 732
BspHI	TCATGA	1 cut(s)	118
BspLI	GGNNCC	2 cut(s)	795, 964
BspMAI	CTGCAG	1 cut(s)	875
BspMI	ACCTGC	1 cut(s)	286
BspPI	GGATC	1 cut(s)	987
BspTI	CTTAAG	1 cut(s)	569
BsrDI	GCAATG	1 cut(s)	485
BsrI	ACTGG	3 cut(s)	219, 365, 678
BssECI	CCNNGG	2 cut(s)	708, 895
BssMI	GATC	4 cut(s)	157, 421, 979, 984
BssSI	CACGAG	2 cut(s)	788, 834
BssT1I	CCWWGG	1 cut(s)	708
Bst2BI	CACGAG	2 cut(s)	788, 834
Bst4CI	ACNGT	7 cut(s)	199, 310, 395, 468, 550, 586, 926
Bst6I	CTCTTC	1 cut(s)	708
BstAFI	CTTAAG	1 cut(s)	569
BstC8I	GCNNGC	2 cut(s)	345, 621
BstDEI	CTNAG	4 cut(s)	132, 328, 615, 740
BstF5I	GGATG	4 cut(s)	26, 57, 870, 881
BstKTI	GATC	4 cut(s)	160, 424, 982, 987
BstMAI	GTCTC	1 cut(s)	894
BstMBI	GATC	4 cut(s)	157, 421, 979, 984
BstMWI	GCNNNNNNNGC	4 cut(s)	290, 454, 761, 876
BstNSI	RCATGY	1 cut(s)	269
BstSCI	CCNGG	1 cut(s)	221
BstSFI	CTRYAG	1 cut(s)	871
BstV1I	GCAGC	6 cut(s)	268, 737, 810, 857, 885, 888
Bsu36I	CCTNAGG	1 cut(s)	132
BsuI	GTATCC	1 cut(s)	901
BsuRI	GGCC	1 cut(s)	858
BtgZI	GCGATG	1 cut(s)	934
BtsCI	GGATG	4 cut(s)	26, 57, 870, 881
BtsIMutI	CAGTG	4 cut(s)	306, 376, 612, 671
BveI	ACCTGC	1 cut(s)	286
Cac8I	GCNNGC	2 cut(s)	345, 621
CciI	TCATGA	1 cut(s)	118
Cfr13I	GGNCC	2 cut(s)	705, 794
Csp6I	GTAC	2 cut(s)	473, 927
CviAII	CATG	5 cut(s)	73, 119, 266, 351, 967
CviQI	GTAC	2 cut(s)	473, 927
DdeI	CTNAG	4 cut(s)	132, 328, 615, 740
DpnI	GATC	4 cut(s)	159, 423, 981, 986
DpnII	GATC	4 cut(s)	157, 421, 979, 984
EaeI	YGGCCR	1 cut(s)	856
Eam1104I	CTCTTC	1 cut(s)	708
EarI	CTCTTC	1 cut(s)	708
Eco130I	CCWWGG	1 cut(s)	708
Eco32I	GATATC	1 cut(s)	67
Eco47I	GGWCC	2 cut(s)	705, 794
Eco81I	CCTNAGG	1 cut(s)	132
Eco88I	CYCGRG	1 cut(s)	894
EcoO109I	RGGNCCY	1 cut(s)	794
EcoRI	GAATTC	2 cut(s)	138, 429
EcoRV	GATATC	1 cut(s)	67
EcoT14I	CCWWGG	1 cut(s)	708
EcoT22I	ATGCAT	1 cut(s)	271
ErhI	CCWWGG	1 cut(s)	708
FaeI	CATG	5 cut(s)	76, 122, 269, 354, 970
FaiI	YATR	7 cut(s)	74, 120, 267, 352, 450, 957, 968
FaqI	GGGAC	1 cut(s)	807
FatI	CATG	5 cut(s)	72, 118, 265, 350, 966
Fnu4HI	GCNGC	6 cut(s)	282, 726, 824, 871, 874, 877
FokI	GGATG	4 cut(s)	33, 64, 868, 877
Fsp4HI	GCNGC	6 cut(s)	282, 726, 824, 871, 874, 877
FspBI	CTAG	2 cut(s)	240, 933
GluI	GCNGC	6 cut(s)	282, 726, 824, 871, 874, 877
GsuI	CTGGAG	1 cut(s)	695
HaeIII	GGCC	1 cut(s)	858
HapII	CCGG	3 cut(s)	222, 494, 859
Hin1II	CATG	5 cut(s)	76, 122, 269, 354, 970
HindIII	AAGCTT	2 cut(s)	778, 851
HinfI	GANTC	5 cut(s)	83, 122, 179, 218, 524
HpaII	CCGG	3 cut(s)	222, 494, 859
HphI	GGTGA	3 cut(s)	182, 456, 837
Hpy188I	TCNGA	7 cut(s)	88, 162, 178, 184, 514, 578, 984
Hpy188III	TCNNGA	4 cut(s)	119, 143, 788, 894
HpyAV	CCTTC	4 cut(s)	199, 471, 628, 938
HpyCH4III	ACNGT	7 cut(s)	199, 310, 395, 468, 550, 586, 926
HpyCH4IV	ACGT	2 cut(s)	602, 694
HpyF10VI	GCNNNNNNNGC	4 cut(s)	290, 454, 761, 876
HpyF3I	CTNAG	4 cut(s)	132, 328, 615, 740
HpySE526I	ACGT	2 cut(s)	602, 694
Hsp92II	CATG	5 cut(s)	76, 122, 269, 354, 970
Kzo9I	GATC	4 cut(s)	157, 421, 979, 984
LmnI	GCTCC	1 cut(s)	601
Lsp1109I	GCAGC	6 cut(s)	268, 737, 810, 857, 885, 888
LweI	GCATC	9 cut(s)	11, 263, 278, 563, 599, 599, 688, 762, 957
MaeI	CTAG	2 cut(s)	240, 933
MaeII	ACGT	2 cut(s)	602, 694
MaeIII	GTNAC	7 cut(s)	9, 58, 94, 235, 246, 389, 935
MalI	GATC	4 cut(s)	159, 423, 981, 986
MboI	GATC	4 cut(s)	157, 421, 979, 984
MboII	GAAGA	5 cut(s)	167, 514, 533, 637, 725
MfeI	CAATTG	1 cut(s)	14
MluCI	AATT	5 cut(s)	14, 138, 382, 404, 429
MmeI	TCCRAC	2 cut(s)	156, 623
Mph1103I	ATGCAT	1 cut(s)	271
MseI	TTAA	7 cut(s)	381, 399, 435, 570, 605, 653, 759
MslI	CAYNNNNRTG	1 cut(s)	513
MspCI	CTTAAG	1 cut(s)	569
MspI	CCGG	3 cut(s)	222, 494, 859
MspR9I	CCNGG	1 cut(s)	223
MunI	CAATTG	1 cut(s)	14
MwoI	GCNNNNNNNGC	4 cut(s)	290, 454, 761, 876
NciI	CCSGG	1 cut(s)	223
NdeII	GATC	4 cut(s)	157, 421, 979, 984
NlaIII	CATG	5 cut(s)	76, 122, 269, 354, 970
NlaIV	GGNNCC	2 cut(s)	795, 964
NmuCI	GTSAC	2 cut(s)	94, 246
NsiI	ATGCAT	1 cut(s)	271
NspI	RCATGY	1 cut(s)	269
PagI	TCATGA	1 cut(s)	118
PfeI	GAWTC	5 cut(s)	83, 122, 179, 218, 524
PflMI	CCANNNNNTGG	3 cut(s)	199, 673, 854
PfoI	TCCNGGA	1 cut(s)	221
PkrI	GCNGC	6 cut(s)	283, 727, 825, 872, 875, 878
PpuMI	RGGWCCY	1 cut(s)	794
Psp1406I	AACGTT	1 cut(s)	602
Psp5II	RGGWCCY	1 cut(s)	794
PspN4I	GGNNCC	2 cut(s)	795, 964
PspPI	GGNCC	2 cut(s)	705, 794
PspPPI	RGGWCCY	1 cut(s)	794
PstI	CTGCAG	1 cut(s)	875
RsaI	GTAC	2 cut(s)	474, 928
RsaNI	GTAC	2 cut(s)	473, 927
RseI	CAYNNNNRTG	1 cut(s)	513
SaqAI	TTAA	7 cut(s)	381, 399, 435, 570, 605, 653, 759
SatI	GCNGC	6 cut(s)	282, 726, 824, 871, 874, 877
Sau3AI	GATC	4 cut(s)	157, 421, 979, 984
Sau96I	GGNCC	2 cut(s)	705, 794
ScrFI	CCNGG	1 cut(s)	223
SfaNI	GCATC	9 cut(s)	11, 263, 278, 563, 599, 599, 688, 762, 957
SfcI	CTRYAG	1 cut(s)	871
SinI	GGWCC	2 cut(s)	705, 794
SmiMI	CAYNNNNRTG	1 cut(s)	513
SmlI	CTYRAG	1 cut(s)	569
SmoI	CTYRAG	1 cut(s)	569
SpeI	ACTAGT	1 cut(s)	239
Sse9I	AATT	5 cut(s)	14, 138, 382, 404, 429
SsiI	CCGC	1 cut(s)	387
SspMI	CTAG	2 cut(s)	240, 933
StyD4I	CCNGG	1 cut(s)	221
StyI	CCWWGG	1 cut(s)	708
TaaI	ACNGT	7 cut(s)	199, 310, 395, 468, 550, 586, 926
TaiI	ACGT	2 cut(s)	605, 697
TasI	AATT	5 cut(s)	14, 138, 382, 404, 429
TfiI	GAWTC	5 cut(s)	83, 122, 179, 218, 524
Tru1I	TTAA	7 cut(s)	381, 399, 435, 570, 605, 653, 759
Tru9I	TTAA	7 cut(s)	381, 399, 435, 570, 605, 653, 759
TscAI	CASTG	4 cut(s)	313, 376, 619, 678
TseFI	GTSAC	2 cut(s)	94, 246
TseI	GCWGC	6 cut(s)	281, 725, 823, 870, 873, 876
Tsp45I	GTSAC	2 cut(s)	94, 246
TspDTI	ATGAA	3 cut(s)	339, 923, 983
TspRI	CASTG	4 cut(s)	313, 376, 619, 678
Van91I	CCANNNNNTGG	3 cut(s)	199, 673, 854
Vha464I	CTTAAG	1 cut(s)	569
VpaK11BI	GGWCC	2 cut(s)	705, 794
XapI	RAATTY	2 cut(s)	138, 429
XceI	RCATGY	1 cut(s)	269
XspI	CTAG	2 cut(s)	240, 933
Zsp2I	ATGCAT	1 cut(s)	271

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.