Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp01

Orthogroup ID

OG0008351

Physical Location & Seq

Genomic Coordinates Reverse (-)

2215994 .. 2220228

Gene Structure 4235 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.1G031100.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1254 bp

ATGTGCTTTTTCTGTATTGCAAGTGCAATGGGAATAGAAGTTACAGATATTTGCATGGACAAGGAATCAGAATGTGTGATAGTTTATTCAGAAGGTCTTTCTCATGATTCAAATCATGAGAGAATTCCCAGTGATCATGCGATTTCTGAGTCATATGAGCATATTAATGGAGATCGTGAACCCCAAAATTTGGAAGAGAGCATTGAAGTAAAGGAATATGAAGTGAAGGAATGTACTACAGAAAACTCTGTTGATGTTTCTCAAATGAGTCATGTTGAAAAATCTAATGAAGATCAGAATGCAGTAGGCTTGAATTCTGAGAATGACCGGCCTGTGGAGAAGGTTCAACTGAATTCTCGGAAAACAAAGGATAGTAATAAGTCACGAGCATCTGTAATTCACACATCAAAATCTGCTGCTGGAAATGCTAGAACAAAACATACTGTTCCACAGCCATTTACCTTGGCGACTGAAAAGCGTGCTTTATGTGGAACTCGTCCAGTCAGTGCTGTACTTGATTGCGGAAATGGTGGCAATAAATTATCTAACACAAGTGATCTGCGACATCTTCATACCACAAAGCATAACCAGCCAATATCACCTTTGATATCAAGGAAGCCTTTGCAACCAGATAAGAAGAAACATTTTGATGAGGAAGATTCCTGTTCTGTTGCTTCCTCCACAGTATCACGGACTATTAGGTCCAGAGCAACTGCTGCATCAGCTCCAACATTTAGATGCACTGAGCGTGCGGAGAAAAGGAAGGAGTTTTATACGAAGTTAGAGGAGAAACACCAAGCGCTGGAGGCTGAAAAAACTCAAAGTGAAGCAAGGACCAAGGACGAGAAGGAGGCAGCTATCAAGCAACTGAGAAGGAGTTTAATGTTTAAGGCAAACCCGATGCCAAGCTTCTACCATGAGGGACCTCCACCTAAGACTGAACTTAAAAAGCTGCCACCAACTCGTGCAAAATCACCAAAGCTTGGCCGGAGGAAGAGCTGCAGTGATACGGTCAAACTATCCCACGGAGATAGAAGCAAAGGAACTTTTGGTCGAGGAAATCGTCACAGTATGGGTAACTGCAAAGAAGACACCACTTATGCTGGTTCTCCAAAAAGTGAAGCTCAGATCAACATCCAAAAGGGTAATGCTGTTTCTGAATTCATTGATGAGACTAAGAACGTGGATGAGATGAAAAAGTTCGTTCCTGCCAGCCTAAATGGACAGCATATGGACATTTTTGTTCAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000902 GO:0001558 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0008017 GO:0008092 GO:0008150 GO:0009653 GO:0009826 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0016049 GO:0022603 GO:0022604 GO:0030308 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032502 GO:0032989 GO:0040007 GO:0040008 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045926 GO:0048519 GO:0048523 GO:0048589 GO:0048638 GO:0048640 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051510 GO:0051511 GO:0055028 GO:0060560 GO:0065007 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

418

Amino Acids

46.49

Weight (kDa)

8.5

Isoelectric Point (pI)

56.19

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23090 AT3G23090 AT3G23090 AT3G23090 AT3G23090
fragaria_vesca	FvH4_4g02740 FvH4_4g02740 FvH4_4g02740
malus_domestica	MD13G1207700.v1.1 MD16G1209200.v1.1
prunus_persica	Prupe.1G031100_v2.0.a1 Prupe.1G031100_v2.0.a1
pyrus_communis	pycom13g17990 pycom16g17650
rosa_chinensis	RchiOBHm_Chr4g0390601
rosa_laevigata	RLG00000009915
rosa_multiflora	Rmu_sc0001380.1_g000010
rosa_roxburghii	Rroxscaffold_5G00336540
rosa_rugosa	Rorug03G0331100
rosa_samantha	Rh4AG032600 Rh4BG026700 Rh4CG036400 Rh4DG029400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	700
AccB7I	CCANNNNNTGG	3 cut(s)	190, 802, 983
AciI	CCGC	2 cut(s)	522, 752
AcoI	YGGCCR	1 cut(s)	985
AcsI	RAATTY	5 cut(s)	123, 187, 313, 352, 1160
AfaI	GTAC	2 cut(s)	235, 513
AfeI	AGCGCT	1 cut(s)	801
AfiI	CCNNNNNNNGG	4 cut(s)	190, 334, 802, 983
AgsI	TTSAA	6 cut(s)	111, 206, 278, 313, 347, 1247
AluBI	AGCT	7 cut(s)	725, 857, 909, 952, 982, 999, 1124
AluI	AGCT	7 cut(s)	725, 857, 909, 952, 982, 999, 1124
Alw26I	GTCTC	1 cut(s)	1166
Aor51HI	AGCGCT	1 cut(s)	801
AoxI	GGCC	2 cut(s)	329, 985
ApeKI	GCWGC	5 cut(s)	416, 716, 854, 952, 999
ApoI	RAATTY	5 cut(s)	123, 187, 313, 352, 1160
AseI	ATTAAT	1 cut(s)	165
Asp700I	GAANNNNTTC	1 cut(s)	1199
AspLEI	GCGC	1 cut(s)	802
AspS9I	GGNCC	3 cut(s)	702, 834, 923
AsuHPI	GGTGA	2 cut(s)	591, 966
AvaII	GGWCC	3 cut(s)	702, 834, 923
BauI	CACGAG	2 cut(s)	384, 963
BbsI	GAAGAC	1 cut(s)	1095
BbvI	GCAGC	5 cut(s)	403, 703, 866, 939, 986
BclI	TGATCA	1 cut(s)	133
BcoDI	GTCTC	1 cut(s)	1166
BfaI	CTAG	1 cut(s)	429
BfmI	CTRYAG	2 cut(s)	237, 1000
BfoI	RGCGCY	1 cut(s)	803
BisI	GCNGC	5 cut(s)	417, 717, 855, 953, 1000
BlsI	GCNGC	5 cut(s)	418, 718, 856, 954, 1001
Bme18I	GGWCC	3 cut(s)	702, 834, 923
BmgT120I	GGNCC	3 cut(s)	702, 834, 923
BmiI	GGNNCC	1 cut(s)	924
BmrI	ACTGGG	1 cut(s)	123
BmsI	GCATC	4 cut(s)	398, 728, 728, 891
BmuI	ACTGGG	1 cut(s)	123
BpiI	GAAGAC	1 cut(s)	1095
BpmI	CTGGAG	1 cut(s)	824
BsaBI	GATNNNNATC	2 cut(s)	111, 1133
BsaJI	CCNNGG	3 cut(s)	462, 837, 1024
Bsc4I	CCNNNNNNNGG	4 cut(s)	190, 334, 802, 983
Bse118I	RCCGGY	1 cut(s)	327
Bse1I	ACTGG	2 cut(s)	129, 500
Bse3DI	GCAATG	1 cut(s)	33
Bse8I	GATNNNNATC	2 cut(s)	111, 1133
BseDI	CCNNGG	3 cut(s)	462, 837, 1024
BseGI	GGATG	2 cut(s)	1134, 1192
BseJI	GATNNNNATC	2 cut(s)	111, 1133
BseLI	CCNNNNNNNGG	4 cut(s)	190, 334, 802, 983
BseMI	GCAATG	1 cut(s)	33
BseMII	CTCAG	5 cut(s)	138, 309, 735, 860, 1139
BseNI	ACTGG	2 cut(s)	129, 500
BseRI	GAGGAG	1 cut(s)	800
BseXI	GCAGC	5 cut(s)	403, 703, 866, 939, 986
BshFI	GGCC	2 cut(s)	331, 987
BsiSI	CCGG	2 cut(s)	328, 988
BslFI	GGGAC	1 cut(s)	936
BslI	CCNNNNNNNGG	4 cut(s)	190, 334, 802, 983
BsmAI	GTCTC	1 cut(s)	1166
BsmFI	GGGAC	1 cut(s)	936
BsmI	GAATGC	1 cut(s)	304
BsnI	GGCC	2 cut(s)	331, 987
Bsp143I	GATC	5 cut(s)	133, 172, 292, 556, 1128
BspACI	CCGC	2 cut(s)	522, 752
BspANI	GGCC	2 cut(s)	331, 987
BspCNI	CTCAG	5 cut(s)	139, 310, 736, 861, 1138
BspHI	TCATGA	2 cut(s)	103, 115
BspLI	GGNNCC	1 cut(s)	924
BspMAI	CTGCAG	1 cut(s)	1004
BspQI	GCTCTTC	1 cut(s)	989
BsrDI	GCAATG	1 cut(s)	33
BsrFI	RCCGGY	1 cut(s)	327
BsrI	ACTGG	2 cut(s)	129, 500
BssAI	RCCGGY	1 cut(s)	327
BssECI	CCNNGG	3 cut(s)	462, 837, 1024
BssMI	GATC	5 cut(s)	133, 172, 292, 556, 1128
BssSI	CACGAG	2 cut(s)	384, 963
BssT1I	CCWWGG	2 cut(s)	462, 837
Bst2BI	CACGAG	2 cut(s)	384, 963
Bst4CI	ACNGT	4 cut(s)	445, 685, 1012, 1070
Bst6I	CTCTTC	2 cut(s)	189, 989
BstAPI	GCANNNNNTGC	1 cut(s)	716
BstC8I	GCNNGC	3 cut(s)	480, 750, 1213
BstDEI	CTNAG	7 cut(s)	147, 318, 744, 869, 933, 1125, 1176
BstDSI	CCRYGG	1 cut(s)	1024
BstF5I	GGATG	2 cut(s)	1134, 1192
BstH2I	RGCGCY	1 cut(s)	803
BstHHI	GCGC	1 cut(s)	802
BstKTI	GATC	5 cut(s)	136, 175, 295, 559, 1131
BstMAI	GTCTC	1 cut(s)	1166
BstMBI	GATC	5 cut(s)	133, 172, 292, 556, 1128
BstMWI	GCNNNNNNNGC	5 cut(s)	425, 589, 716, 722, 806
BstSFI	CTRYAG	2 cut(s)	237, 1000
BstV1I	GCAGC	5 cut(s)	403, 703, 866, 939, 986
BstV2I	GAAGAC	1 cut(s)	1095
BsuRI	GGCC	2 cut(s)	331, 987
BtgI	CCRYGG	1 cut(s)	1024
BtsCI	GGATG	2 cut(s)	1134, 1192
BtsI	GCAGTG	1 cut(s)	1009
BtsIMutI	CAGTG	4 cut(s)	136, 511, 741, 1009
Cac8I	GCNNGC	3 cut(s)	480, 750, 1213
CciI	TCATGA	2 cut(s)	103, 115
CfoI	GCGC	1 cut(s)	802
Cfr10I	RCCGGY	1 cut(s)	327
Cfr13I	GGNCC	3 cut(s)	702, 834, 923
Csp6I	GTAC	2 cut(s)	234, 512
CviAII	CATG	6 cut(s)	55, 104, 116, 137, 272, 917
CviQI	GTAC	2 cut(s)	234, 512
DdeI	CTNAG	7 cut(s)	147, 318, 744, 869, 933, 1125, 1176
DpnI	GATC	5 cut(s)	135, 174, 294, 558, 1130
DpnII	GATC	5 cut(s)	133, 172, 292, 556, 1128
DrdI	GACNNNNNNGTC	1 cut(s)	700
DseDI	GACNNNNNNGTC	1 cut(s)	700
EaeI	YGGCCR	1 cut(s)	985
Eam1104I	CTCTTC	2 cut(s)	189, 989
EarI	CTCTTC	2 cut(s)	189, 989
Eco130I	CCWWGG	2 cut(s)	462, 837
Eco32I	GATATC	1 cut(s)	609
Eco47I	GGWCC	3 cut(s)	702, 834, 923
Eco47III	AGCGCT	1 cut(s)	801
EcoO109I	RGGNCCY	1 cut(s)	923
EcoRI	GAATTC	4 cut(s)	123, 313, 352, 1160
EcoRV	GATATC	1 cut(s)	609
EcoT14I	CCWWGG	2 cut(s)	462, 837
ErhI	CCWWGG	2 cut(s)	462, 837
FaeI	CATG	6 cut(s)	58, 107, 119, 140, 275, 920
FalI	AAGNNNNNCTT	2 cut(s)	604, 636
FaqI	GGGAC	1 cut(s)	936
FatI	CATG	6 cut(s)	54, 103, 115, 136, 271, 916
FauNDI	CATATG	2 cut(s)	154, 1230
FbaI	TGATCA	1 cut(s)	133
Fnu4HI	GCNGC	5 cut(s)	417, 717, 855, 953, 1000
FokI	GGATG	2 cut(s)	1121, 1199
Fsp4HI	GCNGC	5 cut(s)	417, 717, 855, 953, 1000
FspBI	CTAG	1 cut(s)	429
GlaI	GCGC	1 cut(s)	801
GluI	GCNGC	5 cut(s)	417, 717, 855, 953, 1000
GsuI	CTGGAG	1 cut(s)	824
HaeII	RGCGCY	1 cut(s)	803
HaeIII	GGCC	2 cut(s)	331, 987
HapII	CCGG	2 cut(s)	328, 988
HhaI	GCGC	1 cut(s)	802
Hin1II	CATG	6 cut(s)	58, 107, 119, 140, 275, 920
Hin6I	GCGC	1 cut(s)	800
HinP1I	GCGC	1 cut(s)	800
HindIII	AAGCTT	2 cut(s)	907, 980
HinfI	GANTC	5 cut(s)	65, 107, 149, 268, 659
HpaII	CCGG	2 cut(s)	328, 988
HphI	GGTGA	2 cut(s)	591, 966
Hpy166II	GTNNAC	1 cut(s)	179
Hpy188I	TCNGA	8 cut(s)	70, 91, 148, 297, 319, 360, 1128, 1159
Hpy188III	TCNNGA	6 cut(s)	104, 116, 176, 384, 705, 1251
Hpy8I	GTNNAC	1 cut(s)	179
HpyAV	CCTTC	6 cut(s)	86, 220, 334, 757, 841, 867
HpyCH4III	ACNGT	4 cut(s)	445, 685, 1012, 1070
HpyCH4IV	ACGT	1 cut(s)	1182
HpyF10VI	GCNNNNNNNGC	5 cut(s)	425, 589, 716, 722, 806
HpyF3I	CTNAG	7 cut(s)	147, 318, 744, 869, 933, 1125, 1176
HpySE526I	ACGT	1 cut(s)	1182
Hsp92II	CATG	6 cut(s)	58, 107, 119, 140, 275, 920
HspAI	GCGC	1 cut(s)	800
Ksp22I	TGATCA	1 cut(s)	133
Kzo9I	GATC	5 cut(s)	133, 172, 292, 556, 1128
LguI	GCTCTTC	1 cut(s)	989
LmnI	GCTCC	1 cut(s)	730
Lsp1109I	GCAGC	5 cut(s)	403, 703, 866, 939, 986
LweI	GCATC	4 cut(s)	398, 728, 728, 891
MaeI	CTAG	1 cut(s)	429
MaeII	ACGT	1 cut(s)	1182
MaeIII	GTNAC	4 cut(s)	40, 381, 1064, 1076
MalI	GATC	5 cut(s)	135, 174, 294, 558, 1130
MboI	GATC	5 cut(s)	133, 172, 292, 556, 1128
MboII	GAAGA	7 cut(s)	206, 302, 560, 649, 668, 1006, 1100
MluCI	AATT	7 cut(s)	123, 187, 313, 352, 396, 539, 1160
MlyI	GAGTC	2 cut(s)	158, 277
MmeI	TCCRAC	1 cut(s)	752
MnlI	CCTC	9 cut(s)	646, 688, 778, 799, 844, 913, 936, 984, 1049
MroXI	GAANNNNTTC	1 cut(s)	1199
MseI	TTAA	4 cut(s)	165, 881, 888, 945
MslI	CAYNNNNRTG	3 cut(s)	165, 648, 736
MspI	CCGG	2 cut(s)	328, 988
Mva1269I	GAATGC	1 cut(s)	304
MwoI	GCNNNNNNNGC	5 cut(s)	425, 589, 716, 722, 806
NdeI	CATATG	2 cut(s)	154, 1230
NdeII	GATC	5 cut(s)	133, 172, 292, 556, 1128
NlaIII	CATG	6 cut(s)	58, 107, 119, 140, 275, 920
NlaIV	GGNNCC	1 cut(s)	924
NmuCI	GTSAC	2 cut(s)	381, 1064
PagI	TCATGA	2 cut(s)	103, 115
PciSI	GCTCTTC	1 cut(s)	989
PcsI	WCGNNNNNNNCGW	1 cut(s)	1060
PctI	GAATGC	1 cut(s)	304
PdmI	GAANNNNTTC	1 cut(s)	1199
PfeI	GAWTC	3 cut(s)	65, 107, 659
PflMI	CCANNNNNTGG	3 cut(s)	190, 802, 983
PkrI	GCNGC	5 cut(s)	418, 718, 856, 954, 1001
PleI	GAGTC	2 cut(s)	157, 276
PpsI	GAGTC	2 cut(s)	157, 276
PpuMI	RGGWCCY	1 cut(s)	923
PshBI	ATTAAT	1 cut(s)	165
Psp5II	RGGWCCY	1 cut(s)	923
PspN4I	GGNNCC	1 cut(s)	924
PspPI	GGNCC	3 cut(s)	702, 834, 923
PspPPI	RGGWCCY	1 cut(s)	923
PsrI	GAACNNNNNNTAC	2 cut(s)	424, 456
PstI	CTGCAG	1 cut(s)	1004
RsaI	GTAC	2 cut(s)	235, 513
RsaNI	GTAC	2 cut(s)	234, 512
RseI	CAYNNNNRTG	3 cut(s)	165, 648, 736
SapI	GCTCTTC	1 cut(s)	989
SaqAI	TTAA	4 cut(s)	165, 881, 888, 945
SatI	GCNGC	5 cut(s)	417, 717, 855, 953, 1000
Sau3AI	GATC	5 cut(s)	133, 172, 292, 556, 1128
Sau96I	GGNCC	3 cut(s)	702, 834, 923
SchI	GAGTC	2 cut(s)	158, 277
SfaNI	GCATC	4 cut(s)	398, 728, 728, 891
SfcI	CTRYAG	2 cut(s)	237, 1000
SinI	GGWCC	3 cut(s)	702, 834, 923
SmiMI	CAYNNNNRTG	3 cut(s)	165, 648, 736
Sse9I	AATT	7 cut(s)	123, 187, 313, 352, 396, 539, 1160
SsiI	CCGC	2 cut(s)	522, 752
SspMI	CTAG	1 cut(s)	429
StyI	CCWWGG	2 cut(s)	462, 837
TaaI	ACNGT	4 cut(s)	445, 685, 1012, 1070
TaiI	ACGT	1 cut(s)	1185
TaqI	TCGA	1 cut(s)	1054
TasI	AATT	7 cut(s)	123, 187, 313, 352, 396, 539, 1160
TatI	WGTACW	2 cut(s)	233, 511
TfiI	GAWTC	3 cut(s)	65, 107, 659
Tru1I	TTAA	4 cut(s)	165, 881, 888, 945
Tru9I	TTAA	4 cut(s)	165, 881, 888, 945
TscAI	CASTG	4 cut(s)	136, 511, 748, 1009
TseFI	GTSAC	2 cut(s)	381, 1064
TseI	GCWGC	5 cut(s)	416, 716, 854, 952, 999
Tsp45I	GTSAC	2 cut(s)	381, 1064
TspDTI	ATGAA	5 cut(s)	234, 303, 560, 1153, 1208
TspGWI	ACGGA	2 cut(s)	706, 1041
TspRI	CASTG	4 cut(s)	136, 511, 748, 1009
Van91I	CCANNNNNTGG	3 cut(s)	190, 802, 983
VpaK11BI	GGWCC	3 cut(s)	702, 834, 923
VspI	ATTAAT	1 cut(s)	165
XapI	RAATTY	5 cut(s)	123, 187, 313, 352, 1160
XmnI	GAANNNNTTC	1 cut(s)	1199
XspI	CTAG	1 cut(s)	429

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.