Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0008351

Physical Location & Seq

Genomic Coordinates Reverse (-)

4717593 .. 4723819

Gene Structure 6227 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG026700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 981 bp

ATGTTTATCTTCTGTATAGCAAGTGCAATGGCAATAGAAGTCACAGATATTTGCATGGACAAGGAGTCAGATGGTGCCATAATTTATTCAGATGCTTCTCATGACTCAAATCGTGAAAGAATTCCCAATGATCATGCAATTTCAGAGTCATATGAGGAGACCCAAAACTTGCAAGAGAGCACTGAAGTAAAGGATTATGAAGTAAAGGAATGCACTACAGAAACCTCTGTTGACATTTCCCAATTGAGTCAGATTGAAAATGCTATCGAAGATCAGAATGTGGTAAGCTCGAAGCCTGATAATGGCAAGCCTGTGGAGAAGGTTCAGCGGGATTCTGAGAAAACAAAGGATGGAAATAAGTCACGCCCATCTGTTAATCAAGCATCAAAACCTTCTGCGGGAAATGGTAGAACAAAACACACTGTTCCACGGCCATTTACCTTAGCAACTGAAAAGCGTGCTTCATATGGAGCTCGTCCAGTCAGTGCTGTACTTGATTGCGGTAATGGCATCAATAAATCACCCAACTCGAGCAATCCGCGACATCTTAATACCACAAAGCATACCCAGCCAAGATCACCTTTGGTACCAAGGAAGTCATTTCAACTTGATGGGAAGAAGCATCCTGATGAGGAAGATACCTGTTCTGTTGCTTCCTCCACAGTAGCATCTGTACGAACTATTAGGTCCAGGACAACAGTGGCATCAGCTCCGACGTTTAGAAGTAATGAACGTGCAGAGAAAAGGAAGGAGTTTTATTCAAAATTAGAGGAGAAACATCACGCACTTGAGGCTGAGAAAAATCAAAGTGAAGCAAGGACCAAGGAAGAGAAAGAGGCAGCTGTTAAGCAATTGAGAAAGAGTTTAACGTTCAAGGCAAACCCGATGCCAAGTTTCTACCATGATGGACCTCCAGCTAAGACTGAACTCAAAAAGGTCATACTGTCAATTCATTTAAATCTGGCCCCGTATGACATTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000902 GO:0001558 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0008017 GO:0008092 GO:0008150 GO:0009653 GO:0009826 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0016049 GO:0022603 GO:0022604 GO:0030308 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032502 GO:0032989 GO:0040007 GO:0040008 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045926 GO:0048519 GO:0048523 GO:0048589 GO:0048638 GO:0048640 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051510 GO:0051511 GO:0055028 GO:0060560 GO:0065007 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

326

Amino Acids

36.27

Weight (kDa)

7.67

Isoelectric Point (pI)

53.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPX2	PF06886	239 - 308	2.9e-26	Targeting protein for Xklp2 (TPX2) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23090 AT3G23090 AT3G23090 AT3G23090 AT3G23090
fragaria_vesca	FvH4_4g02740 FvH4_4g02740 FvH4_4g02740
malus_domestica	MD13G1207700.v1.1 MD16G1209200.v1.1
prunus_persica	Prupe.1G031100_v2.0.a1 Prupe.1G031100_v2.0.a1
pyrus_communis	pycom13g17990 pycom16g17650
rosa_chinensis	RchiOBHm_Chr4g0390601
rosa_laevigata	RLG00000009915
rosa_multiflora	Rmu_sc0001380.1_g000010
rosa_roxburghii	Rroxscaffold_5G00336540
rosa_rugosa	Rorug03G0331100
rosa_samantha	Rh4AG032600 Rh4BG026700 Rh4CG036400 Rh4DG029400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc65I	GGTACC	1 cut(s)	586
AccB1I	GGYRCC	2 cut(s)	74, 586
AccII	CGCG	1 cut(s)	541
AciI	CCGC	4 cut(s)	328, 398, 501, 539
AclI	AACGTT	1 cut(s)	869
AcoI	YGGCCR	1 cut(s)	431
AcsI	RAATTY	1 cut(s)	120
AcuI	CTGAAG	1 cut(s)	204
AfaI	GTAC	3 cut(s)	492, 588, 675
AfiI	CCNNNNNNNGG	2 cut(s)	302, 398
AgsI	TTSAA	4 cut(s)	257, 605, 762, 874
AhdI	GACNNNNNGTC	1 cut(s)	64
AjnI	CCWGG	1 cut(s)	689
AluBI	AGCT	5 cut(s)	288, 473, 710, 842, 917
AluI	AGCT	5 cut(s)	288, 473, 710, 842, 917
Alw21I	GWGCWC	2 cut(s)	182, 475
Alw26I	GTCTC	1 cut(s)	152
Ama87I	CYCGRG	1 cut(s)	529
AoxI	GGCC	2 cut(s)	431, 963
ApeKI	GCWGC	1 cut(s)	839
ApoI	RAATTY	1 cut(s)	120
Asp700I	GAANNNNTTC	1 cut(s)	120
Asp718I	GGTACC	1 cut(s)	586
AspS9I	GGNCC	4 cut(s)	687, 819, 908, 964
AsuHPI	GGTGA	2 cut(s)	513, 570
AvaI	CYCGRG	1 cut(s)	529
AvaII	GGWCC	3 cut(s)	687, 819, 908
BanI	GGYRCC	2 cut(s)	74, 586
BanII	GRGCYC	1 cut(s)	475
Bbv12I	GWGCWC	2 cut(s)	182, 475
BbvI	GCAGC	1 cut(s)	851
BccI	CCATC	5 cut(s)	65, 344, 376, 605, 899
BceAI	ACGGC	1 cut(s)	446
BciT130I	CCWGG	1 cut(s)	691
BclI	TGATCA	1 cut(s)	130
BcoDI	GTCTC	1 cut(s)	152
BfmI	CTRYAG	1 cut(s)	216
BisI	GCNGC	1 cut(s)	840
BlsI	GCNGC	1 cut(s)	841
Bme1390I	CCNGG	1 cut(s)	691
Bme18I	GGWCC	3 cut(s)	687, 819, 908
BmeRI	GACNNNNNGTC	1 cut(s)	64
BmeT110I	CYCGRG	1 cut(s)	529
BmgT120I	GGNCC	4 cut(s)	687, 819, 908, 964
BmiI	GGNNCC	3 cut(s)	76, 588, 966
BmrFI	CCNGG	1 cut(s)	691
BmsI	GCATC	7 cut(s)	82, 392, 519, 631, 677, 713, 876
BpmI	CTGGAG	1 cut(s)	897
Bpu10I	CCTNAGC	1 cut(s)	442
BpuEI	CTTGAG	1 cut(s)	809
BsaI	GGTCTC	1 cut(s)	152
BsaJI	CCNNGG	3 cut(s)	428, 590, 822
Bsc4I	CCNNNNNNNGG	2 cut(s)	302, 398
Bse1I	ACTGG	1 cut(s)	479
Bse3DI	GCAATG	1 cut(s)	33
BseBI	CCWGG	1 cut(s)	691
BseDI	CCNNGG	3 cut(s)	428, 590, 822
BseGI	GGATG	2 cut(s)	355, 622
BseLI	CCNNNNNNNGG	2 cut(s)	302, 398
BseMI	GCAATG	1 cut(s)	33
BseMII	CTCAG	2 cut(s)	327, 786
BseNI	ACTGG	1 cut(s)	479
BseRI	GAGGAG	2 cut(s)	170, 785
BseXI	GCAGC	1 cut(s)	851
BseYI	CCCAGC	1 cut(s)	567
BsgI	GTGCAG	1 cut(s)	756
Bsh1236I	CGCG	1 cut(s)	541
BshFI	GGCC	2 cut(s)	433, 965
BshNI	GGYRCC	2 cut(s)	74, 586
BsiHKAI	GWGCWC	2 cut(s)	182, 475
BsiHKCI	CYCGRG	1 cut(s)	529
BslI	CCNNNNNNNGG	2 cut(s)	302, 398
BsmAI	GTCTC	1 cut(s)	152
BsmI	GAATGC	1 cut(s)	215
BsnI	GGCC	2 cut(s)	433, 965
Bso31I	GGTCTC	1 cut(s)	152
BsoBI	CYCGRG	1 cut(s)	529
Bsp1286I	GDGCHC	2 cut(s)	182, 475
Bsp143I	GATC	3 cut(s)	130, 271, 575
BspACI	CCGC	4 cut(s)	328, 398, 501, 539
BspANI	GGCC	2 cut(s)	433, 965
BspCNI	CTCAG	2 cut(s)	328, 787
BspFNI	CGCG	1 cut(s)	541
BspHI	TCATGA	1 cut(s)	100
BspLI	GGNNCC	3 cut(s)	76, 588, 966
BspT107I	GGYRCC	2 cut(s)	74, 586
BspTNI	GGTCTC	1 cut(s)	152
BsrDI	GCAATG	1 cut(s)	33
BsrI	ACTGG	1 cut(s)	479
BssECI	CCNNGG	3 cut(s)	428, 590, 822
BssMI	GATC	3 cut(s)	130, 271, 575
BssT1I	CCWWGG	2 cut(s)	590, 822
Bst2UI	CCWGG	1 cut(s)	691
Bst4CI	ACNGT	4 cut(s)	424, 664, 700, 945
Bst6I	CTCTTC	1 cut(s)	822
BstC8I	GCNNGC	2 cut(s)	308, 459
BstDEI	CTNAG	4 cut(s)	336, 442, 795, 918
BstDSI	CCRYGG	1 cut(s)	428
BstF5I	GGATG	2 cut(s)	355, 622
BstFNI	CGCG	1 cut(s)	541
BstKTI	GATC	3 cut(s)	133, 274, 578
BstMAI	GTCTC	1 cut(s)	152
BstMBI	GATC	3 cut(s)	130, 271, 575
BstMWI	GCNNNNNNNGC	3 cut(s)	507, 568, 791
BstNI	CCWGG	1 cut(s)	691
BstSCI	CCNGG	1 cut(s)	689
BstSFI	CTRYAG	1 cut(s)	216
BstUI	CGCG	1 cut(s)	541
BstV1I	GCAGC	1 cut(s)	851
BsuRI	GGCC	2 cut(s)	433, 965
BtgI	CCRYGG	1 cut(s)	428
BtsCI	GGATG	2 cut(s)	355, 622
BtsIMutI	CAGTG	4 cut(s)	180, 420, 490, 705
Cac8I	GCNNGC	2 cut(s)	308, 459
CciI	TCATGA	1 cut(s)	100
Cfr13I	GGNCC	4 cut(s)	687, 819, 908, 964
Csp6I	GTAC	3 cut(s)	491, 587, 674
CviAII	CATG	4 cut(s)	55, 101, 134, 902
CviQI	GTAC	3 cut(s)	491, 587, 674
DdeI	CTNAG	4 cut(s)	336, 442, 795, 918
DpnI	GATC	3 cut(s)	132, 273, 577
DpnII	GATC	3 cut(s)	130, 271, 575
DraI	TTTAAA	1 cut(s)	957
DriI	GACNNNNNGTC	1 cut(s)	64
EaeI	YGGCCR	1 cut(s)	431
Eam1104I	CTCTTC	1 cut(s)	822
Eam1105I	GACNNNNNGTC	1 cut(s)	64
EarI	CTCTTC	1 cut(s)	822
Ecl136II	GAGCTC	1 cut(s)	473
Eco130I	CCWWGG	2 cut(s)	590, 822
Eco24I	GRGCYC	1 cut(s)	475
Eco31I	GGTCTC	1 cut(s)	152
Eco47I	GGWCC	3 cut(s)	687, 819, 908
Eco53kI	GAGCTC	1 cut(s)	473
Eco57I	CTGAAG	1 cut(s)	204
Eco88I	CYCGRG	1 cut(s)	529
EcoICRI	GAGCTC	1 cut(s)	473
EcoRI	GAATTC	1 cut(s)	120
EcoRII	CCWGG	1 cut(s)	689
EcoT14I	CCWWGG	2 cut(s)	590, 822
EcoT38I	GRGCYC	1 cut(s)	475
ErhI	CCWWGG	2 cut(s)	590, 822
FaeI	CATG	4 cut(s)	58, 104, 137, 905
FalI	AAGNNNNNCTT	2 cut(s)	565, 597
FatI	CATG	4 cut(s)	54, 100, 133, 901
FauI	CCCGC	2 cut(s)	321, 391
FauNDI	CATATG	2 cut(s)	151, 466
FbaI	TGATCA	1 cut(s)	130
Fnu4HI	GCNGC	1 cut(s)	840
FokI	GGATG	2 cut(s)	362, 609
FriOI	GRGCYC	1 cut(s)	475
Fsp4HI	GCNGC	1 cut(s)	840
GluI	GCNGC	1 cut(s)	840
GsaI	CCCAGC	1 cut(s)	571
GsuI	CTGGAG	1 cut(s)	897
HaeIII	GGCC	2 cut(s)	433, 965
Hin1II	CATG	4 cut(s)	58, 104, 137, 905
HincII	GTYRAC	1 cut(s)	232
HindII	GTYRAC	1 cut(s)	232
HinfI	GANTC	5 cut(s)	65, 104, 146, 247, 332
HphI	GGTGA	2 cut(s)	513, 570
Hpy166II	GTNNAC	1 cut(s)	232
Hpy188I	TCNGA	7 cut(s)	70, 91, 145, 252, 276, 337, 714
Hpy188III	TCNNGA	3 cut(s)	101, 113, 626
Hpy8I	GTNNAC	1 cut(s)	232
Hpy99I	CGWCG	1 cut(s)	718
HpyAV	CCTTC	3 cut(s)	313, 402, 742
HpyCH4III	ACNGT	4 cut(s)	424, 664, 700, 945
HpyCH4IV	ACGT	3 cut(s)	716, 733, 869
HpyCH4V	TGCA	6 cut(s)	26, 54, 137, 172, 213, 737
HpyF10VI	GCNNNNNNNGC	3 cut(s)	507, 568, 791
HpyF3I	CTNAG	4 cut(s)	336, 442, 795, 918
HpySE526I	ACGT	3 cut(s)	716, 733, 869
Hsp92II	CATG	4 cut(s)	58, 104, 137, 905
KpnI	GGTACC	1 cut(s)	590
Ksp22I	TGATCA	1 cut(s)	130
Kzo9I	GATC	3 cut(s)	130, 271, 575
LmnI	GCTCC	2 cut(s)	470, 715
Lsp1109I	GCAGC	1 cut(s)	851
LweI	GCATC	7 cut(s)	82, 392, 519, 631, 677, 713, 876
MaeII	ACGT	3 cut(s)	716, 733, 869
MaeIII	GTNAC	2 cut(s)	40, 360
MalI	GATC	3 cut(s)	132, 273, 577
MboI	GATC	3 cut(s)	130, 271, 575
MboII	GAAGA	4 cut(s)	281, 628, 647, 839
MfeI	CAATTG	2 cut(s)	242, 851
MhlI	GDGCHC	2 cut(s)	182, 475
MluCI	AATT	7 cut(s)	81, 120, 138, 242, 764, 851, 948
MlyI	GAGTC	4 cut(s)	74, 98, 155, 256
MmeI	TCCRAC	1 cut(s)	737
MnlI	CCTC	8 cut(s)	148, 235, 625, 667, 763, 784, 829, 921
MroXI	GAANNNNTTC	1 cut(s)	120
MseI	TTAA	5 cut(s)	375, 549, 846, 866, 956
MslI	CAYNNNNRTG	1 cut(s)	627
MspA1I	CMGCKG	2 cut(s)	328, 842
MspR9I	CCNGG	1 cut(s)	691
MunI	CAATTG	2 cut(s)	242, 851
Mva1269I	GAATGC	1 cut(s)	215
MvaI	CCWGG	1 cut(s)	691
MvnI	CGCG	1 cut(s)	541
MwoI	GCNNNNNNNGC	3 cut(s)	507, 568, 791
NdeI	CATATG	2 cut(s)	151, 466
NdeII	GATC	3 cut(s)	130, 271, 575
NlaIII	CATG	4 cut(s)	58, 104, 137, 905
NlaIV	GGNNCC	3 cut(s)	76, 588, 966
NmuCI	GTSAC	2 cut(s)	40, 360
PaeR7I	CTCGAG	1 cut(s)	529
PagI	TCATGA	1 cut(s)	100
PctI	GAATGC	1 cut(s)	215
PdmI	GAANNNNTTC	1 cut(s)	120
PfeI	GAWTC	1 cut(s)	332
PfoI	TCCNGGA	1 cut(s)	689
PkrI	GCNGC	1 cut(s)	841
PleI	GAGTC	4 cut(s)	73, 98, 154, 255
PpsI	GAGTC	4 cut(s)	73, 98, 154, 255
Psp124BI	GAGCTC	1 cut(s)	475
Psp1406I	AACGTT	1 cut(s)	869
Psp6I	CCWGG	1 cut(s)	689
PspFI	CCCAGC	1 cut(s)	567
PspGI	CCWGG	1 cut(s)	689
PspN4I	GGNNCC	3 cut(s)	76, 588, 966
PspPI	GGNCC	4 cut(s)	687, 819, 908, 964
PspXI	VCTCGAGB	1 cut(s)	529
PvuII	CAGCTG	1 cut(s)	842
RsaI	GTAC	3 cut(s)	492, 588, 675
RsaNI	GTAC	3 cut(s)	491, 587, 674
RseI	CAYNNNNRTG	1 cut(s)	627
SacI	GAGCTC	1 cut(s)	475
SaqAI	TTAA	5 cut(s)	375, 549, 846, 866, 956
SatI	GCNGC	1 cut(s)	840
Sau3AI	GATC	3 cut(s)	130, 271, 575
Sau96I	GGNCC	4 cut(s)	687, 819, 908, 964
SchI	GAGTC	4 cut(s)	74, 98, 155, 256
ScrFI	CCNGG	1 cut(s)	691
SduI	GDGCHC	2 cut(s)	182, 475
SfaNI	GCATC	7 cut(s)	82, 392, 519, 631, 677, 713, 876
SfcI	CTRYAG	1 cut(s)	216
Sfr274I	CTCGAG	1 cut(s)	529
SinI	GGWCC	3 cut(s)	687, 819, 908
SlaI	CTCGAG	1 cut(s)	529
SmiI	ATTTAAAT	1 cut(s)	957
SmiMI	CAYNNNNRTG	1 cut(s)	627
SmlI	CTYRAG	2 cut(s)	529, 788
SmoI	CTYRAG	2 cut(s)	529, 788
Sse9I	AATT	7 cut(s)	81, 120, 138, 242, 764, 851, 948
SsiI	CCGC	4 cut(s)	328, 398, 501, 539
SstI	GAGCTC	1 cut(s)	475
StyD4I	CCNGG	1 cut(s)	689
StyI	CCWWGG	2 cut(s)	590, 822
SwaI	ATTTAAAT	1 cut(s)	957
TaaI	ACNGT	4 cut(s)	424, 664, 700, 945
TaiI	ACGT	3 cut(s)	719, 736, 872
TaqI	TCGA	3 cut(s)	267, 290, 530
TasI	AATT	7 cut(s)	81, 120, 138, 242, 764, 851, 948
TatI	WGTACW	1 cut(s)	490
TfiI	GAWTC	1 cut(s)	332
Tru1I	TTAA	5 cut(s)	375, 549, 846, 866, 956
Tru9I	TTAA	5 cut(s)	375, 549, 846, 866, 956
TscAI	CASTG	4 cut(s)	187, 427, 490, 705
TseFI	GTSAC	2 cut(s)	40, 360
TseI	GCWGC	1 cut(s)	839
Tsp45I	GTSAC	2 cut(s)	40, 360
TspDTI	ATGAA	4 cut(s)	213, 453, 744, 941
TspRI	CASTG	4 cut(s)	187, 427, 490, 705
VpaK11BI	GGWCC	3 cut(s)	687, 819, 908
XapI	RAATTY	1 cut(s)	120
XcmI	CCANNNNNNNNNTGG	1 cut(s)	697
XhoI	CTCGAG	1 cut(s)	529
XmnI	GAANNNNTTC	1 cut(s)	120

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.