Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr16

Orthogroup ID

OG0008351

Physical Location & Seq

Genomic Coordinates Reverse (-)

19747197 .. 19750619

Gene Structure 3423 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD16G1209200.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1218 bp

ATGGGGATAGAAGTTACAGATATCTGCATGGACAAGGAATCAGAATGTGTCACAAATTACTCAGAAGGTCTTTCTCATGATTCAAATCATGAGAGAATCCCCAGTGATCATGTGATTTCAGAGTCATATGAGCATATTAATGGGGATTGTGAACAACAAAATTTGGAAGAAAGTCTTGAAGTAAAGGAGTATGAAGTGAAAGAATGTACTACAGAAAACTCTGTTGATGTTTCTCAAATAAGTCTTATTGAAAAATTTAGTGAGGATCAGAATGTAGTAGGGTCGAACTCTGATAATGACCAGCCTTTGGATAAGGTTCAATTGGATTCCGGGAAAACAAAGGTTAGTAGTAAGTCACTAGCATCTGCAAAACGTGCATCAAAACCTGCTGCGGGAAATGCTAGAACAAAACACACTGTTCCACAGCCATTTACCTTAGCGACTGAAAAGCGTGCTTCATGTGGAAGTCGTCCAGTCAGTGCTGTACTTGATTGCGGTAATGGTGCCAATAAATTACCCAACAGAAGTGATCTGCGTCATCTTAATACCACAAAGCATAACCAGCCAATATCACCTTTGGTACTAAGGATGCCAATGCAACCAGATAAGAAGAAGCATTCTGATGAGGAAGATTCCTGTTCTGTTGCTTCCACCACAGTAGCATCTGCACGAACTATTAGGTCCAGAGCAATTGTTGCATCAGCTCCAACGTTTAGATGCACTGAGCGTGCGGAGAAAAGAAAGGAGTTTTATTCAAGGTTAGAGGAGAAGCACCAAGCATTGGAGGTGCAAAGAACTGAAAGTGATGCAAGGACCAAGGAAGAGAAGGAGGCAGCTATCAAGCAACTGAGAAAGAGTTTAACATTTAAGGCAAACCCGATGCCAAGCTTCTATCACGAGGGACCTCCACCTAAAACTGAACTTAAAAAGCTGCCACCAACTCGTGCAAAGTCGCCAAAGCTTGGCCGGAGGATGAGCTGCAGTGAAACAGTCAAAGTATCTCGAGGAGACAGAATGAAAGGAAATCGTCACAGTATGGGTAGTTACAAAGAAGACACCACTTATGCTGGTTCCCTGAAAAGTGAGGGTCAGATCAACATCCAAAATGGTAATGCTGTTTGCGAGTTCATTGATGAGACTAAGAAAGTGGACGAGATAAACAAGTTTGTTCCGGCAAACCTAAATGGACAGCACATGGACATGTATGTTCAATCTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000226 GO:0000902 GO:0001558 GO:0003674 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005856 GO:0005874 GO:0005881 GO:0005938 GO:0006996 GO:0007010 GO:0007017 GO:0008017 GO:0008092 GO:0008150 GO:0009653 GO:0009826 GO:0009987 GO:0015630 GO:0015631 GO:0016043 GO:0016049 GO:0022603 GO:0022604 GO:0030308 GO:0030863 GO:0030865 GO:0030981 GO:0031122 GO:0032502 GO:0032989 GO:0040007 GO:0040008 GO:0043226 GO:0043228 GO:0043229 GO:0043232 GO:0043622 GO:0044422 GO:0044424 GO:0044430 GO:0044444 GO:0044446 GO:0044448 GO:0044464 GO:0045926 GO:0048519 GO:0048523 GO:0048589 GO:0048638 GO:0048640 GO:0048856 GO:0048869 GO:0050789 GO:0050793 GO:0050794 GO:0051093 GO:0051128 GO:0051129 GO:0051510 GO:0051511 GO:0055028 GO:0060560 GO:0065007 GO:0071840 GO:0071944 GO:0097435 GO:0099080 GO:0099081 GO:0099512 GO:0099513 GO:0099568

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

TPX2

Protein Analysis

406

Amino Acids

45.12

Weight (kDa)

7.58

Isoelectric Point (pI)

57.64

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
TPX2	PF06886	237 - 306	1.5e-25	Targeting protein for Xklp2 (TPX2) domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008351)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23090 AT3G23090 AT3G23090 AT3G23090 AT3G23090
fragaria_vesca	FvH4_4g02740 FvH4_4g02740 FvH4_4g02740
malus_domestica	MD13G1207700.v1.1 MD16G1209200.v1.1
prunus_persica	Prupe.1G031100_v2.0.a1 Prupe.1G031100_v2.0.a1
pyrus_communis	pycom13g17990 pycom16g17650
rosa_chinensis	RchiOBHm_Chr4g0390601
rosa_laevigata	RLG00000009915
rosa_multiflora	Rmu_sc0001380.1_g000010
rosa_roxburghii	Rroxscaffold_5G00336540
rosa_rugosa	Rorug03G0331100
rosa_samantha	Rh4AG032600 Rh4BG026700 Rh4CG036400 Rh4DG029400

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	394
AccB1I	GGYRCC	1 cut(s)	503
AccB7I	CCANNNNNTGG	3 cut(s)	307, 781, 962
AciI	CCGC	3 cut(s)	392, 495, 731
AclI	AACGTT	1 cut(s)	710
AclWI	GGATC	1 cut(s)	273
AcoI	YGGCCR	1 cut(s)	964
AcsI	RAATTY	2 cut(s)	160, 254
AfaI	GTAC	3 cut(s)	208, 486, 582
AfiI	CCNNNNNNNGG	4 cut(s)	307, 392, 781, 962
AflIII	ACRYGT	1 cut(s)	1200
AgsI	TTSAA	6 cut(s)	84, 179, 251, 320, 756, 1211
AluBI	AGCT	6 cut(s)	704, 836, 888, 931, 961, 978
AluI	AGCT	6 cut(s)	704, 836, 888, 931, 961, 978
Alw26I	GTCTC	2 cut(s)	1002, 1130
AlwI	GGATC	1 cut(s)	273
Ama87I	CYCGRG	1 cut(s)	1002
AoxI	GGCC	1 cut(s)	964
ApeKI	GCWGC	4 cut(s)	389, 833, 931, 978
ApoI	RAATTY	2 cut(s)	160, 254
AseI	ATTAAT	1 cut(s)	138
AspS9I	GGNCC	3 cut(s)	681, 813, 902
AsuC2I	CCSGG	1 cut(s)	331
AsuHPI	GGTGA	1 cut(s)	564
AvaI	CYCGRG	1 cut(s)	1002
AvaII	GGWCC	3 cut(s)	681, 813, 902
BanI	GGYRCC	1 cut(s)	503
BauI	CACGAG	2 cut(s)	896, 942
BbsI	GAAGAC	1 cut(s)	1059
BbvI	GCAGC	4 cut(s)	376, 845, 918, 965
BclI	TGATCA	1 cut(s)	106
BcnI	CCSGG	1 cut(s)	331
BcoDI	GTCTC	2 cut(s)	1002, 1130
BfaI	CTAG	2 cut(s)	359, 402
BfmI	CTRYAG	2 cut(s)	210, 979
BfuAI	ACCTGC	1 cut(s)	394
BisI	GCNGC	4 cut(s)	390, 834, 932, 979
BlsI	GCNGC	4 cut(s)	391, 835, 933, 980
Bme1390I	CCNGG	1 cut(s)	331
Bme18I	GGWCC	3 cut(s)	681, 813, 902
BmeT110I	CYCGRG	1 cut(s)	1002
BmgT120I	GGNCC	3 cut(s)	681, 813, 902
BmiI	GGNNCC	3 cut(s)	505, 903, 1072
BmrFI	CCNGG	1 cut(s)	331
BmrI	ACTGGG	1 cut(s)	96
BmsI	GCATC	8 cut(s)	371, 386, 579, 671, 707, 707, 796, 870
BmuI	ACTGGG	1 cut(s)	96
BpiI	GAAGAC	1 cut(s)	1059
Bpu10I	CCTNAGC	1 cut(s)	436
BpuMI	CCSGG	1 cut(s)	331
BsaBI	GATNNNNATC	2 cut(s)	84, 1097
BsaJI	CCNNGG	1 cut(s)	816
Bsc4I	CCNNNNNNNGG	4 cut(s)	307, 392, 781, 962
Bse1I	ACTGG	2 cut(s)	102, 473
Bse8I	GATNNNNATC	2 cut(s)	84, 1097
BseDI	CCNNGG	1 cut(s)	816
BseGI	GGATG	3 cut(s)	594, 978, 1098
BseJI	GATNNNNATC	2 cut(s)	84, 1097
BseLI	CCNNNNNNNGG	4 cut(s)	307, 392, 781, 962
BseMII	CTCAG	3 cut(s)	75, 714, 839
BseNI	ACTGG	2 cut(s)	102, 473
BseRI	GAGGAG	2 cut(s)	779, 1020
BseXI	GCAGC	4 cut(s)	376, 845, 918, 965
BsgI	GTGCAG	1 cut(s)	651
BshFI	GGCC	1 cut(s)	966
BshNI	GGYRCC	1 cut(s)	503
BsiHKCI	CYCGRG	1 cut(s)	1002
BsiSI	CCGG	3 cut(s)	330, 967, 1172
BslFI	GGGAC	1 cut(s)	915
BslI	CCNNNNNNNGG	4 cut(s)	307, 392, 781, 962
BsmAI	GTCTC	2 cut(s)	1002, 1130
BsmFI	GGGAC	1 cut(s)	915
BsmI	GAATGC	1 cut(s)	616
BsnI	GGCC	1 cut(s)	966
BsoBI	CYCGRG	1 cut(s)	1002
Bsp143I	GATC	4 cut(s)	106, 265, 529, 1092
BspACI	CCGC	3 cut(s)	392, 495, 731
BspANI	GGCC	1 cut(s)	966
BspCNI	CTCAG	3 cut(s)	74, 715, 840
BspHI	TCATGA	2 cut(s)	76, 88
BspLI	GGNNCC	3 cut(s)	505, 903, 1072
BspMAI	CTGCAG	1 cut(s)	983
BspMI	ACCTGC	1 cut(s)	394
BspPI	GGATC	1 cut(s)	273
BspT107I	GGYRCC	1 cut(s)	503
BsrI	ACTGG	2 cut(s)	102, 473
BssECI	CCNNGG	1 cut(s)	816
BssMI	GATC	4 cut(s)	106, 265, 529, 1092
BssSI	CACGAG	2 cut(s)	896, 942
BssT1I	CCWWGG	1 cut(s)	816
Bst2BI	CACGAG	2 cut(s)	896, 942
Bst4CI	ACNGT	4 cut(s)	418, 658, 991, 1034
Bst6I	CTCTTC	1 cut(s)	816
BstAPI	GCANNNNNTGC	2 cut(s)	374, 695
BstC8I	GCNNGC	2 cut(s)	453, 729
BstDEI	CTNAG	6 cut(s)	61, 436, 584, 723, 848, 1140
BstF5I	GGATG	3 cut(s)	594, 978, 1098
BstKTI	GATC	4 cut(s)	109, 268, 532, 1095
BstMAI	GTCTC	2 cut(s)	1002, 1130
BstMBI	GATC	4 cut(s)	106, 265, 529, 1092
BstMWI	GCNNNNNNNGC	4 cut(s)	374, 398, 562, 695
BstNSI	RCATGY	1 cut(s)	1204
BstSCI	CCNGG	1 cut(s)	329
BstSFI	CTRYAG	2 cut(s)	210, 979
BstV1I	GCAGC	4 cut(s)	376, 845, 918, 965
BstV2I	GAAGAC	1 cut(s)	1059
BsuRI	GGCC	1 cut(s)	966
BtsCI	GGATG	3 cut(s)	594, 978, 1098
BtsI	GCAGTG	1 cut(s)	988
BtsIMutI	CAGTG	5 cut(s)	109, 414, 484, 720, 988
BveI	ACCTGC	1 cut(s)	394
Cac8I	GCNNGC	2 cut(s)	453, 729
CciI	TCATGA	2 cut(s)	76, 88
Cfr13I	GGNCC	3 cut(s)	681, 813, 902
CseI	GACGC	1 cut(s)	524
Csp6I	GTAC	3 cut(s)	207, 485, 581
CviAII	CATG	7 cut(s)	28, 77, 89, 110, 459, 1195, 1201
CviQI	GTAC	3 cut(s)	207, 485, 581
DdeI	CTNAG	6 cut(s)	61, 436, 584, 723, 848, 1140
DpnI	GATC	4 cut(s)	108, 267, 531, 1094
DpnII	GATC	4 cut(s)	106, 265, 529, 1092
EaeI	YGGCCR	1 cut(s)	964
Eam1104I	CTCTTC	1 cut(s)	816
EarI	CTCTTC	1 cut(s)	816
Eco130I	CCWWGG	1 cut(s)	816
Eco32I	GATATC	1 cut(s)	22
Eco47I	GGWCC	3 cut(s)	681, 813, 902
Eco88I	CYCGRG	1 cut(s)	1002
EcoO109I	RGGNCCY	1 cut(s)	902
EcoRV	GATATC	1 cut(s)	22
EcoT14I	CCWWGG	1 cut(s)	816
ErhI	CCWWGG	1 cut(s)	816
FaeI	CATG	7 cut(s)	31, 80, 92, 113, 462, 1198, 1204
FalI	AAGNNNNNCTT	2 cut(s)	159, 191
FaqI	GGGAC	1 cut(s)	915
FatI	CATG	7 cut(s)	27, 76, 88, 109, 458, 1194, 1200
FauI	CCCGC	1 cut(s)	385
FauNDI	CATATG	1 cut(s)	127
FbaI	TGATCA	1 cut(s)	106
Fnu4HI	GCNGC	4 cut(s)	390, 834, 932, 979
FokI	GGATG	3 cut(s)	601, 985, 1085
Fsp4HI	GCNGC	4 cut(s)	390, 834, 932, 979
FspBI	CTAG	2 cut(s)	359, 402
GluI	GCNGC	4 cut(s)	390, 834, 932, 979
HaeIII	GGCC	1 cut(s)	966
HapII	CCGG	3 cut(s)	330, 967, 1172
HgaI	GACGC	1 cut(s)	524
Hin1II	CATG	7 cut(s)	31, 80, 92, 113, 462, 1198, 1204
HindIII	AAGCTT	2 cut(s)	886, 959
HinfI	GANTC	6 cut(s)	38, 80, 96, 122, 326, 632
HpaII	CCGG	3 cut(s)	330, 967, 1172
HphI	GGTGA	1 cut(s)	564
Hpy166II	GTNNAC	2 cut(s)	152, 1150
Hpy188I	TCNGA	7 cut(s)	43, 64, 121, 270, 292, 622, 1092
Hpy188III	TCNNGA	7 cut(s)	77, 89, 176, 684, 896, 1002, 1215
Hpy8I	GTNNAC	2 cut(s)	152, 1150
HpyAV	CCTTC	2 cut(s)	59, 820
HpyCH4III	ACNGT	4 cut(s)	418, 658, 991, 1034
HpyCH4IV	ACGT	2 cut(s)	373, 710
HpyF10VI	GCNNNNNNNGC	4 cut(s)	374, 398, 562, 695
HpyF3I	CTNAG	6 cut(s)	61, 436, 584, 723, 848, 1140
HpySE526I	ACGT	2 cut(s)	373, 710
Hsp92II	CATG	7 cut(s)	31, 80, 92, 113, 462, 1198, 1204
Ksp22I	TGATCA	1 cut(s)	106
Kzo9I	GATC	4 cut(s)	106, 265, 529, 1092
LmnI	GCTCC	1 cut(s)	709
Lsp1109I	GCAGC	4 cut(s)	376, 845, 918, 965
LweI	GCATC	8 cut(s)	371, 386, 579, 671, 707, 707, 796, 870
MaeI	CTAG	2 cut(s)	359, 402
MaeII	ACGT	2 cut(s)	373, 710
MaeIII	GTNAC	5 cut(s)	13, 49, 354, 1028, 1043
MalI	GATC	4 cut(s)	108, 267, 531, 1094
MboI	GATC	4 cut(s)	106, 265, 529, 1092
MboII	GAAGA	5 cut(s)	179, 622, 641, 833, 1064
MfeI	CAATTG	2 cut(s)	320, 690
MluCI	AATT	6 cut(s)	55, 160, 254, 320, 512, 690
MlyI	GAGTC	1 cut(s)	131
MmeI	TCCRAC	1 cut(s)	731
MseI	TTAA	5 cut(s)	138, 543, 860, 867, 924
MslI	CAYNNNNRTG	3 cut(s)	138, 621, 1199
MspI	CCGG	3 cut(s)	330, 967, 1172
MspR9I	CCNGG	1 cut(s)	331
MunI	CAATTG	2 cut(s)	320, 690
Mva1269I	GAATGC	1 cut(s)	616
MwoI	GCNNNNNNNGC	4 cut(s)	374, 398, 562, 695
NciI	CCSGG	1 cut(s)	331
NdeI	CATATG	1 cut(s)	127
NdeII	GATC	4 cut(s)	106, 265, 529, 1092
NlaIII	CATG	7 cut(s)	31, 80, 92, 113, 462, 1198, 1204
NlaIV	GGNNCC	3 cut(s)	505, 903, 1072
NmuCI	GTSAC	3 cut(s)	49, 354, 1028
NspI	RCATGY	1 cut(s)	1204
PaeR7I	CTCGAG	1 cut(s)	1002
PagI	TCATGA	2 cut(s)	76, 88
PciI	ACATGT	1 cut(s)	1200
PctI	GAATGC	1 cut(s)	616
PfeI	GAWTC	5 cut(s)	38, 80, 96, 326, 632
PflMI	CCANNNNNTGG	3 cut(s)	307, 781, 962
PfoI	TCCNGGA	1 cut(s)	329
PkrI	GCNGC	4 cut(s)	391, 835, 933, 980
PleI	GAGTC	1 cut(s)	130
PpsI	GAGTC	1 cut(s)	130
PpuMI	RGGWCCY	1 cut(s)	902
PscI	ACATGT	1 cut(s)	1200
PshBI	ATTAAT	1 cut(s)	138
Psp1406I	AACGTT	1 cut(s)	710
Psp5II	RGGWCCY	1 cut(s)	902
PspN4I	GGNNCC	3 cut(s)	505, 903, 1072
PspPI	GGNCC	3 cut(s)	681, 813, 902
PspPPI	RGGWCCY	1 cut(s)	902
PstI	CTGCAG	1 cut(s)	983
RsaI	GTAC	3 cut(s)	208, 486, 582
RsaNI	GTAC	3 cut(s)	207, 485, 581
RseI	CAYNNNNRTG	3 cut(s)	138, 621, 1199
SaqAI	TTAA	5 cut(s)	138, 543, 860, 867, 924
SatI	GCNGC	4 cut(s)	390, 834, 932, 979
Sau3AI	GATC	4 cut(s)	106, 265, 529, 1092
Sau96I	GGNCC	3 cut(s)	681, 813, 902
SchI	GAGTC	1 cut(s)	131
ScrFI	CCNGG	1 cut(s)	331
SfaNI	GCATC	8 cut(s)	371, 386, 579, 671, 707, 707, 796, 870
SfcI	CTRYAG	2 cut(s)	210, 979
Sfr274I	CTCGAG	1 cut(s)	1002
SinI	GGWCC	3 cut(s)	681, 813, 902
SlaI	CTCGAG	1 cut(s)	1002
SmiMI	CAYNNNNRTG	3 cut(s)	138, 621, 1199
SmlI	CTYRAG	1 cut(s)	1002
SmoI	CTYRAG	1 cut(s)	1002
Sse9I	AATT	6 cut(s)	55, 160, 254, 320, 512, 690
SsiI	CCGC	3 cut(s)	392, 495, 731
SspMI	CTAG	2 cut(s)	359, 402
StyD4I	CCNGG	1 cut(s)	329
StyI	CCWWGG	1 cut(s)	816
TaaI	ACNGT	4 cut(s)	418, 658, 991, 1034
TaiI	ACGT	2 cut(s)	376, 713
TaqI	TCGA	2 cut(s)	284, 1003
TasI	AATT	6 cut(s)	55, 160, 254, 320, 512, 690
TatI	WGTACW	2 cut(s)	206, 484
TfiI	GAWTC	5 cut(s)	38, 80, 96, 326, 632
Tru1I	TTAA	5 cut(s)	138, 543, 860, 867, 924
Tru9I	TTAA	5 cut(s)	138, 543, 860, 867, 924
TscAI	CASTG	5 cut(s)	109, 421, 484, 727, 988
TseFI	GTSAC	3 cut(s)	49, 354, 1028
TseI	GCWGC	4 cut(s)	389, 833, 931, 978
Tsp45I	GTSAC	3 cut(s)	49, 354, 1028
TspDTI	ATGAA	4 cut(s)	207, 447, 1031, 1117
TspRI	CASTG	5 cut(s)	109, 421, 484, 727, 988
Van91I	CCANNNNNTGG	3 cut(s)	307, 781, 962
VpaK11BI	GGWCC	3 cut(s)	681, 813, 902
VspI	ATTAAT	1 cut(s)	138
XapI	RAATTY	2 cut(s)	160, 254
XceI	RCATGY	1 cut(s)	1204
XhoI	CTCGAG	1 cut(s)	1002
XspI	CTAG	2 cut(s)	359, 402

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.