AT3G23330

Pentatricopeptide repeat-containing protein

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
Physical Location & Seq
Forward (+)
8347127 .. 8349514
2388 bp
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UTR
Exon/CDS
Intron
AT3G23330.2

Sequence Viewer

Length: 2148 bp
ATGAGTTCATCAAAAGCCCTAATCAAAACCCTGATTAAGAATCCAACTCGAATCAAATCCAAATCTCAAGCGAAGCAGCTTCACGCACAATTCATCAGAACTCAATCACTCTCTCATACATCAGCTTCAATCGTAATCTCAATCTACACAAACCTTAAACTTTTGCACGAAGCTTTGCTTCTTTTCAAAACCCTTAAGTCTCCTCCTGTTCTAGCATGGAAGTCAGTAATCAGATGCTTCACCGACCAGTCTCTATTCTCCAAGGCGTTAGCTTCGTTTGTGGAAATGCGAGCTTCTGGGAGATGCCCAGATCACAATGTGTTTCCTTCTGTTTTGAAATCGTGTACGATGATGATGGATTTGAGATTTGGTGAGTCTGTTCATGGGTTTATTGTTAGGCTTGGTATGGATTGTGATTTGTATACTGGTAATGCGCTTATGAATATGTATGCTAAGCTTCTTGGTATGGGTTCTAAGATTAGTGTAGGTAATGTGTTCGATGAAATGCCTCAAAGAACGTCCAATTCTGGAGACGAAGATGTAAAGGCTGAAACTTGCATTATGCCTTTTGGAATAGACAGTGTGAGGAGGGTTTTTGAAGTGATGCCTAGAAAGGATGTTGTGTCGTATAATACTATCATTGCAGGGTATGCACAGAGTGGAATGTATGAAGATGCTTTGAGAATGGTTAGGGAGATGGGAACTACTGACTTAAAGCCTGATTCTTTTACTTTGTCTAGTGTGCTTCCGATATTTTCTGAGTATGTGGATGTTATTAAGGGGAAAGAGATTCATGGGTATGTGATTAGGAAAGGGATTGATAGTGATGTATATATTGGGAGTAGTTTGGTTGATATGTATGCGAAAAGTGCTCGGATTGAAGACTCTGAAAGAGTGTTTTCTCGCTTGTATTGTCGGGATGGTATCTCGTGGAACTCGCTTGTAGCTGGGTATGTACAGAATGGTAGATACAATGAGGCTCTGAGATTGTTCAGGCAAATGGTGACCGCAAAGGTTAAGCCAGGGGCTGTGGCGTTCTCAAGTGTGATTCCTGCTTGTGCTCACCTAGCCACCTTGCACCTTGGGAAACAACTTCACGGATATGTATTAAGGGGTGGCTTTGGCAGTAACATATTCATAGCTAGTGCACTTGTTGATATGTACTCGAAATGTGGGAATATTAAGGCTGCTAGGAAGATTTTTGACAGGATGAATGTACTCGATGAAGTATCATGGACGGCTATTATAATGGGGCATGCGTTACATGGTCATGGGCATGAAGCAGTTTCGTTGTTTGAGGAGATGAAACGACAAGGAGTGAAACCGAATCAAGTGGCATTTGTTGCTGTACTAACGGCTTGTAGTCATGTGGGGTTGGTAGATGAGGCATGGGGATATTTCAACAGCATGACTAAGGTTTACGGTTTAAACCAGGAGTTAGAACATTATGCAGCTGTAGCGGATCTTCTAGGCCGTGCAGGGAAGCTGGAAGAAGCATACAATTTCATTTCAAAGATGTGTGTTGAACCAACTGGTAGTGTCTGGTCTACCTTATTGTCTTCTTGCAGCGTTCACAAGAATCTTGAGTTGGCTGAGAAGGTAGCGGAGAAGATATTCACTGTCGATTCTGAAAACATGGGAGCTTATGTTTTGATGTGCAATATGTATGCGTCTAATGGAAGATGGAAAGAAATGGCGAAACTAAGATTGCGTATGAGGAAGAAAGGATTGCGGAAAAAGCCAGCTTGTAGTTGGATCGAAATGAAAAACAAGACTCATGGATTTGTTTCAGGAGATAGATCGCATCCGAGTATGGACAAGATCAACGAGTTTCTTAAAGCTGTAATGGAACAGATGGAGAAAGAAGGGTATGTTGCAGACACAAGCGGCGTGCTTCACGATGTAGACGAAGAGCATAAGAGAGAGCTTTTGTTCGGACACAGTGAGAGATTGGCTGTTGCCTTTGGTATCATCAACACAGAACCTGGCACGACAATTAGAGTCACTAAGAATATAAGGATATGCACGGATTGTCATGTCGCAATCAAGTTTATCTCGAAGATCACGGAAAGAGAGATTATCGTTAGGGATAATAGCAGATTCCACCATTTCAACCGTGGAAACTGTTCTTGTGGAGATTATTGGTAA

Protein Analysis

715

Amino Acids

80.06

Weight (kDa)

8.99

Isoelectric Point (pI)

33.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 96 - 140 7.7e-11 PPR repeat family
PPR_1 PF12854 97 - 124 5.8e-07 PPR repeat
PPR PF01535 99 - 124 1.5e-06 PPR repeat
PPR_2 PF13041 200 - 246 5.5e-10 PPR repeat family
PPR PF01535 200 - 227 1.7e-07 PPR repeat
PPR_2 PF13041 299 - 346 7e-11 PPR repeat family
PPR PF01535 301 - 331 3.5e-07 PPR repeat
E_motif PF20431 416 - 478 1.5e-19 E motif
DYW_deaminase PF14432 514 - 606 5e-43 DYW family of nucleic acid deaminases
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1247
AccI GTMKAC 3 cut(s) 422, 1547, 1905
AciI CCGC 5 cut(s) 1008, 1460, 1604, 1732, 1887
AclWI GGATC 2 cut(s) 1470, 1763
AdeI CACNNNGTG 2 cut(s) 319, 659
AfaI GTAC 5 cut(s) 346, 957, 1163, 1218, 1350
AflII CTTAAG 1 cut(s) 194
AgsI TTSAA 9 cut(s) 129, 187, 337, 599, 881, 1402, 1512, 1526, 2113
AjnI CCWGG 3 cut(s) 1021, 1431, 1984
AjuI GAANNNNNNNTTGG 2 cut(s) 1571, 1603
Alw21I GWGCWC 3 cut(s) 874, 1063, 1150
Alw26I GTCTC 3 cut(s) 204, 255, 525
Alw44I GTGCAC 1 cut(s) 1146
AlwI GGATC 2 cut(s) 1470, 1763
AlwNI CAGNNNCTG 2 cut(s) 1028, 1985
AoxI GGCC 1 cut(s) 1471
ApaLI GTGCAC 1 cut(s) 1146
ApeKI GCWGC 4 cut(s) 76, 1187, 1451, 1566
Asp700I GAANNNNTTC 2 cut(s) 1613, 2125
AspLEI GCGC 1 cut(s) 436
AsuHPI GGTGA 4 cut(s) 232, 383, 1015, 1055
BaeGI GKGCMC 1 cut(s) 1150
BarI GAAGNNNNNNTAC 2 cut(s) 1449, 1481
BauI CACGAG 1 cut(s) 928
BbsI GAAGAC 2 cut(s) 888, 1551
Bbv12I GWGCWC 3 cut(s) 874, 1063, 1150
BbvI GCAGC 4 cut(s) 88, 1174, 1463, 1578
BccI CCATC 5 cut(s) 349, 691, 914, 1677, 1849
BceAI ACGGC 3 cut(s) 1254, 1371, 1458
BciT130I CCWGG 3 cut(s) 1023, 1433, 1986
BcoDI GTCTC 3 cut(s) 204, 255, 525
BfaI CTAG 7 cut(s) 212, 609, 738, 1067, 1143, 1191, 1469
BfmI CTRYAG 1 cut(s) 1455
BfrI CTTAAG 1 cut(s) 194
BisI GCNGC 5 cut(s) 77, 1188, 1452, 1567, 1888
BlpI GCTNAGC 1 cut(s) 453
BlsI GCNGC 5 cut(s) 78, 1189, 1453, 1568, 1889
Bme1390I CCNGG 3 cut(s) 1023, 1433, 1986
BmrFI CCNGG 3 cut(s) 1023, 1433, 1986
BmsI GCATC 5 cut(s) 224, 293, 594, 664, 1813
BpiI GAAGAC 2 cut(s) 888, 1551
BpmI CTGGAG 1 cut(s) 549
Bpu1102I GCTNAGC 1 cut(s) 453
BpuEI CTTGAG 3 cut(s) 51, 1024, 1604
BsaJI CCNNGG 4 cut(s) 261, 1022, 1081, 2116
BsaXI ACNNNNNCTCC 2 cut(s) 1632, 1662
Bse1I ACTGG 3 cut(s) 247, 430, 1537
Bse3DI GCAATG 1 cut(s) 639
BseBI CCWGG 3 cut(s) 1023, 1433, 1986
BseDI CCNNGG 4 cut(s) 261, 1022, 1081, 2116
BseGI GGATG 5 cut(s) 622, 775, 925, 1215, 1804
BseMI GCAATG 1 cut(s) 639
BseMII CTCAG 3 cut(s) 750, 974, 1584
BseNI ACTGG 3 cut(s) 247, 430, 1537
BseRI GAGGAG 3 cut(s) 192, 601, 1313
BseSI GKGCMC 1 cut(s) 1150
BseXI GCAGC 4 cut(s) 88, 1174, 1463, 1578
BseYI CCCAGC 1 cut(s) 947
BsgI GTGCAG 1 cut(s) 1497
BshFI GGCC 1 cut(s) 1473
BsiHKAI GWGCWC 3 cut(s) 874, 1063, 1150
BsmAI GTCTC 3 cut(s) 204, 255, 525
BsmBI CGTCTC 1 cut(s) 525
BsnI GGCC 1 cut(s) 1473
Bsp1286I GDGCHC 3 cut(s) 874, 1063, 1150
Bsp1407I TGTACA 1 cut(s) 955
Bsp143I GATC 6 cut(s) 310, 1462, 1755, 1799, 1821, 2061
Bsp1720I GCTNAGC 1 cut(s) 453
BspACI CCGC 5 cut(s) 1008, 1460, 1604, 1732, 1887
BspANI GGCC 1 cut(s) 1473
BspCNI CTCAG 3 cut(s) 751, 975, 1585
BspPI GGATC 2 cut(s) 1470, 1763
BspQI GCTCTTC 1 cut(s) 1905
BspTI CTTAAG 1 cut(s) 194
BsrDI GCAATG 1 cut(s) 639
BsrGI TGTACA 1 cut(s) 955
BsrI ACTGG 3 cut(s) 247, 430, 1537
BssECI CCNNGG 4 cut(s) 261, 1022, 1081, 2116
BssMI GATC 6 cut(s) 310, 1462, 1755, 1799, 1821, 2061
BssNAI GTATAC 1 cut(s) 423
BssSI CACGAG 1 cut(s) 928
BssT1I CCWWGG 2 cut(s) 261, 1081
Bst1107I GTATAC 1 cut(s) 423
Bst2BI CACGAG 1 cut(s) 928
Bst2UI CCWGG 3 cut(s) 1023, 1433, 1986
Bst4CI ACNGT 6 cut(s) 581, 1424, 1621, 1943, 2117, 2126
Bst6I CTCTTC 1 cut(s) 1905
BstAFI CTTAAG 1 cut(s) 194
BstAPI GCANNNNNTGC 2 cut(s) 650, 1343
BstAUI TGTACA 1 cut(s) 955
BstC8I GCNNGC 4 cut(s) 291, 1257, 1743, 1892
BstDEI CTNAG 8 cut(s) 453, 474, 759, 983, 1413, 1593, 1703, 2007
BstDSI CCRYGG 1 cut(s) 2116
BstEII GGTNACC 1 cut(s) 1003
BstF5I GGATG 5 cut(s) 622, 775, 925, 1215, 1804
BstHHI GCGC 1 cut(s) 436
BstKTI GATC 6 cut(s) 313, 1465, 1758, 1802, 1824, 2064
BstMAI GTCTC 3 cut(s) 204, 255, 525
BstMBI GATC 6 cut(s) 310, 1462, 1755, 1799, 1821, 2061
BstMWI GCNNNNNNNGC 6 cut(s) 650, 869, 1067, 1343, 1457, 1738
BstNI CCWGG 3 cut(s) 1023, 1433, 1986
BstNSI RCATGY 1 cut(s) 1259
BstPI GGTNACC 1 cut(s) 1003
BstSCI CCNGG 3 cut(s) 1021, 1431, 1984
BstSFI CTRYAG 1 cut(s) 1455
BstSLI GKGCMC 1 cut(s) 1150
BstV1I GCAGC 4 cut(s) 88, 1174, 1463, 1578
BstV2I GAAGAC 2 cut(s) 888, 1551
BstX2I RGATCY 1 cut(s) 1462
BstYI RGATCY 1 cut(s) 1462
BstZ17I GTATAC 1 cut(s) 423
BsuRI GGCC 1 cut(s) 1473
BtgI CCRYGG 1 cut(s) 2116
BtsCI GGATG 5 cut(s) 622, 775, 925, 1215, 1804
BtsIMutI CAGTG 3 cut(s) 586, 1617, 1948
Cac8I GCNNGC 4 cut(s) 291, 1257, 1743, 1892
CaiI CAGNNNCTG 2 cut(s) 1028, 1985
CfoI GCGC 1 cut(s) 436
CseI GACGC 1 cut(s) 1659
Csp6I GTAC 5 cut(s) 345, 956, 1162, 1217, 1349
CviQI GTAC 5 cut(s) 345, 956, 1162, 1217, 1349
DdeI CTNAG 8 cut(s) 453, 474, 759, 983, 1413, 1593, 1703, 2007
DpnI GATC 6 cut(s) 312, 1464, 1757, 1801, 1823, 2063
DpnII GATC 6 cut(s) 310, 1462, 1755, 1799, 1821, 2061
DraI TTTAAA 1 cut(s) 1428
DraIII CACNNNGTG 2 cut(s) 319, 659
Eam1104I CTCTTC 1 cut(s) 1905
EarI CTCTTC 1 cut(s) 1905
Eco130I CCWWGG 2 cut(s) 261, 1081
Eco91I GGTNACC 1 cut(s) 1003
EcoO65I GGTNACC 1 cut(s) 1003
EcoRII CCWGG 3 cut(s) 1021, 1431, 1984
EcoT14I CCWWGG 2 cut(s) 261, 1081
ErhI CCWWGG 2 cut(s) 261, 1081
Esp3I CGTCTC 1 cut(s) 525
FalI AAGNNNNNCTT 2 cut(s) 162, 194
FblI GTMKAC 3 cut(s) 422, 1547, 1905
Fnu4HI GCNGC 5 cut(s) 77, 1188, 1452, 1567, 1888
FokI GGATG 5 cut(s) 629, 782, 932, 1222, 1791
Fsp4HI GCNGC 5 cut(s) 77, 1188, 1452, 1567, 1888
FspBI CTAG 7 cut(s) 212, 609, 738, 1067, 1143, 1191, 1469
GlaI GCGC 1 cut(s) 435
GluI GCNGC 5 cut(s) 77, 1188, 1452, 1567, 1888
GsaI CCCAGC 1 cut(s) 951
GsuI CTGGAG 1 cut(s) 549
HaeIII GGCC 1 cut(s) 1473
HgaI GACGC 1 cut(s) 1659
HhaI GCGC 1 cut(s) 436
Hin6I GCGC 1 cut(s) 434
HinP1I GCGC 1 cut(s) 434
HindIII AAGCTT 2 cut(s) 171, 455
HphI GGTGA 4 cut(s) 232, 383, 1015, 1055
Hpy166II GTNNAC 7 cut(s) 345, 423, 1148, 1420, 1548, 1573, 1906
Hpy188III TCNNGA 6 cut(s) 528, 917, 1583, 1791, 1898, 2056
Hpy8I GTNNAC 7 cut(s) 345, 423, 1148, 1420, 1548, 1573, 1906
HpyAV CCTTC 3 cut(s) 336, 1591, 1859
HpyCH4III ACNGT 6 cut(s) 581, 1424, 1621, 1943, 2117, 2126
HpyCH4IV ACGT 1 cut(s) 518
HpyF10VI GCNNNNNNNGC 6 cut(s) 650, 869, 1067, 1343, 1457, 1738
HpyF3I CTNAG 8 cut(s) 453, 474, 759, 983, 1413, 1593, 1703, 2007
HpySE526I ACGT 1 cut(s) 518
HspAI GCGC 1 cut(s) 434
Kzo9I GATC 6 cut(s) 310, 1462, 1755, 1799, 1821, 2061
LguI GCTCTTC 1 cut(s) 1905
LmnI GCTCC 1 cut(s) 1640
Lsp1109I GCAGC 4 cut(s) 88, 1174, 1463, 1578
LweI GCATC 5 cut(s) 224, 293, 594, 664, 1813
MaeI CTAG 7 cut(s) 212, 609, 738, 1067, 1143, 1191, 1469
MaeII ACGT 1 cut(s) 518
MaeIII GTNAC 4 cut(s) 1003, 1127, 1260, 2002
MalI GATC 6 cut(s) 312, 1464, 1757, 1801, 1823, 2063
MboI GATC 6 cut(s) 310, 1462, 1755, 1799, 1821, 2061
MflI RGATCY 1 cut(s) 1462
MhlI GDGCHC 3 cut(s) 874, 1063, 1150
MluCI AATT 4 cut(s) 89, 523, 1501, 1995
MlyI GAGTC 4 cut(s) 383, 878, 1768, 2010
MmeI TCCRAC 2 cut(s) 68, 1733
MnlI CCTC 8 cut(s) 213, 519, 579, 582, 970, 1291, 1378, 1710
MroXI GAANNNNTTC 2 cut(s) 1613, 2125
MslI CAYNNNNRTG 4 cut(s) 798, 1101, 1269, 1275
MspA1I CMGCKG 1 cut(s) 1454
MspCI CTTAAG 1 cut(s) 194
MspR9I CCNGG 3 cut(s) 1023, 1433, 1986
MssI GTTTAAAC 1 cut(s) 1428
MvaI CCWGG 3 cut(s) 1023, 1433, 1986
MwoI GCNNNNNNNGC 6 cut(s) 650, 869, 1067, 1343, 1457, 1738
NdeII GATC 6 cut(s) 310, 1462, 1755, 1799, 1821, 2061
NmuCI GTSAC 2 cut(s) 1003, 2002
NspI RCATGY 1 cut(s) 1259
PaeI GCATGC 1 cut(s) 1259
PciSI GCTCTTC 1 cut(s) 1905
PcsI WCGNNNNNNNCGW 1 cut(s) 1905
PdmI GAANNNNTTC 2 cut(s) 1613, 2125
PfeI GAWTC 9 cut(s) 40, 51, 722, 790, 1048, 1327, 1579, 1625, 2100
PkrI GCNGC 5 cut(s) 78, 1189, 1453, 1568, 1889
PleI GAGTC 4 cut(s) 382, 878, 1768, 2009
PmeI GTTTAAAC 1 cut(s) 1428
PpsI GAGTC 4 cut(s) 382, 878, 1768, 2009
PsiI TTATAA 1 cut(s) 1247
Psp6I CCWGG 3 cut(s) 1021, 1431, 1984
PspEI GGTNACC 1 cut(s) 1003
PspFI CCCAGC 1 cut(s) 947
PspGI CCWGG 3 cut(s) 1021, 1431, 1984
PstNI CAGNNNCTG 2 cut(s) 1028, 1985
PsuI RGATCY 1 cut(s) 1462
PvuII CAGCTG 1 cut(s) 1454
RsaI GTAC 5 cut(s) 346, 957, 1163, 1218, 1350
RsaNI GTAC 5 cut(s) 345, 956, 1162, 1217, 1349
RseI CAYNNNNRTG 4 cut(s) 798, 1101, 1269, 1275
SapI GCTCTTC 1 cut(s) 1905
SatI GCNGC 5 cut(s) 77, 1188, 1452, 1567, 1888
Sau3AI GATC 6 cut(s) 310, 1462, 1755, 1799, 1821, 2061
SchI GAGTC 4 cut(s) 383, 878, 1768, 2010
ScrFI CCNGG 3 cut(s) 1023, 1433, 1986
SduI GDGCHC 3 cut(s) 874, 1063, 1150
SfaNI GCATC 5 cut(s) 224, 293, 594, 664, 1813
SfcI CTRYAG 1 cut(s) 1455
SmiMI CAYNNNNRTG 4 cut(s) 798, 1101, 1269, 1275
SmlI CTYRAG 4 cut(s) 66, 194, 1039, 1583
SmoI CTYRAG 4 cut(s) 66, 194, 1039, 1583
SphI GCATGC 1 cut(s) 1259
Sse9I AATT 4 cut(s) 89, 523, 1501, 1995
SsiI CCGC 5 cut(s) 1008, 1460, 1604, 1732, 1887
SspI AATATT 1 cut(s) 1180
SspMI CTAG 7 cut(s) 212, 609, 738, 1067, 1143, 1191, 1469
StyD4I CCNGG 3 cut(s) 1021, 1431, 1984
StyI CCWWGG 2 cut(s) 261, 1081
TaaI ACNGT 6 cut(s) 581, 1424, 1621, 1943, 2117, 2126
TaiI ACGT 1 cut(s) 521
TaqI TCGA 7 cut(s) 49, 498, 1166, 1221, 1623, 1758, 2057
TasI AATT 4 cut(s) 89, 523, 1501, 1995
TatI WGTACW 4 cut(s) 955, 1161, 1216, 1348
TauI GCSGC 1 cut(s) 1890
TfiI GAWTC 9 cut(s) 40, 51, 722, 790, 1048, 1327, 1579, 1625, 2100
TscAI CASTG 3 cut(s) 586, 1624, 1948
TseFI GTSAC 2 cut(s) 1003, 2002
TseI GCWGC 4 cut(s) 76, 1187, 1451, 1566
Tsp45I GTSAC 2 cut(s) 1003, 2002
TspGWI ACGGA 3 cut(s) 1113, 2042, 2081
TspRI CASTG 3 cut(s) 586, 1624, 1948
Vha464I CTTAAG 1 cut(s) 194
VneI GTGCAC 1 cut(s) 1146
XceI RCATGY 1 cut(s) 1259
XcmI CCANNNNNNNNNTGG 2 cut(s) 1749, 2114
XmiI GTMKAC 3 cut(s) 422, 1547, 1905
XmnI GAANNNNTTC 2 cut(s) 1613, 2125
XspI CTAG 7 cut(s) 212, 609, 738, 1067, 1143, 1191, 1469
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.