Basic Information

Type: gene

Biological Identity

Species

rosa_wichuraiana

Chromosome

Chr4

Orthogroup ID

OG0004747

Physical Location & Seq

Genomic Coordinates Forward (+)

7488308 .. 7490449

Gene Structure 2142 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rw4G003850.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2058 bp

ATGACCTCCCTCCAAACCCTGCTCAAAACCCTCTTCAAAAACCCCAGCACCATCAAAACCCCATCCCAGGCCAAACAGCTCCACGCCCAAATCCTCAAAACCAAACCCCCTTCACCTCCCGACCTCTCCTTCCTCGTCTCTCTTTACTCCAACCTCAACCTCCTACACCACACCCTCACTCTCTTCAACACTCTCCACTTCCCTCCCTCCACCATTGCCTGGAAGTCCATCATCAGATGCTACGCTTCCCACGGCCTCTGGCACCATTCCTTGGCCTCATTTGTGGAGATGAGGACTTTTGGCGTGTGCCCAGATCGCCATGTTTTCCCTTCTGTGCTCAAATCGTGCGCATCGGTTAGGGACTTGAGGTTAGGTGAGTCGGTTCATGGGTGCATTGTTCGGAGCGGTATGGAGTTTGATTTGTATACGTGTAATGCGCTCATGAATATGTACGCCAAGTTGGAGATTTTGGGTGCACACCAAGTGCTCGATGAAAGTCGCGACCGAAATCTAGAGGGTACTTTCGGGAGACATTTGGTTGGTTCTGTGGGACTTGACGGTGGTGGTGGTGAGAGCATTGATAGAGTGTTTAGGCAAAAGGAAGGCGAAAGAGTTATTGAAATGGACAGTGTGAGGAAGGTCTTCGACGTGATGCCAGAACGAGATATTGTGTCCTGGAATACAGTGATTGCAGGGATGTATGAACAGGCTTTGGCGAGGGTCAGGGAGATGGGGAATGCCAACTTGAAGCCTGATTCTTTTACTTTGTCTAGCGTGCTTCCGGTTTTTGCAGAATATGTAGATGCTGTTAAGGGAAAGGAGATCCATGCGTATGCCATAAGACATGGATTTGATGCAGATGTGTTCATTGGCAGTAGCTTGATCGACATGTATGCAAACTGTACTCGTATGGAGGACTCGCTAAAGGTGTTCAACCTGCTACGTCGGCGCGATTCCATTTCATGGAACTCGATTATTGGAGGGTGTGTGCAGAATGATGTCTCCTTTTCAAGTATCATTCCAGCTTGTGCCCACTTGACAACACTACATCTGGGGAAGCAGCTCCATGGATACATAATACGGGGCGGATTTGAGGATAATGTCTACATAGCAAGCTCACTAGTGGACATGTATGCAAAATGTGGTAACATTAAGATGGCGAGGTGGATTTTTGACAAAATGGAGCAACATGATATGGTGTCATGGACAGCCATGACTATGGGATATGCATTGCACGGTCATGCCCATGACGCCATTTCCTTGTTTGAACAGATGAAAGGAGAGGCAGTAAAGCCTACTTATGTTGCTTTCATGGCTGTATTGACTGCGTGTAGCCATGCTGGATTGGTAGACGAAGCTTGGAAGTATTATAATAGTATGACCAAAAAATATAGGATTGCTCCAGGTATAGAGCACTATGCTGCTGTTGCAGACCTTCTTGGTCGAGCTGGAAGGTTGGACGAAGCTTATCGCTTTATCTCTAGCATGCATATAGAACCAACAGGAAGTGTATGGTCAACATTGTTGGCTGCTTGTAGAGTTCACAAGAATGTTGAATTGGCTGAAAAGGTTGCTGAAAAAATATTTGCTGTTGATCCCGAGAACATTGGAGCTTATGTGCTATTGTCAAACATATATTCTGCTGCTAAGAAATGGAAAGAAGCGGCAGAAATGAGAGTCTCGATGAGAGATAAGGGCATGAAAAAAAAGCCAGCCTGCAGCTGGATTGAAGTTAAAAACAAGGTTCATGCTTTTGTAGCGGGAGATGAATCCCACCCATATTATGATGAGATAACCAAGGCTCTGGAAGTTCTCTTGGAGCAGATGGAGCGAGAAGGGTATGTGCCGAACACAAATGAGGTGCTCCAAGATGTTGAAGAGGAGCAAAAGAAGTACCTGTTGTGTCACCACATAACAAAGAACCTTCGGGTATGTGTGGATTGCCACACAGCAACGAAACTTATATCCAACATAGTCGGAAGAGAGATAATTGTCAGAGATAATAGCCGGTTTCACCATTTCAGGGGTGGGGAGTGTTCATGTCGAGACTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

685

Amino Acids

77.22

Weight (kDa)

7.38

Isoelectric Point (pI)

43.73

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
E_motif	PF20431	515 - 577	4.5e-20	E motif
DYW_deaminase	PF14432	637 - 685	1.4e-21	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23330 AT3G23330
fragaria_vesca	FvH4_4g03820 FvH4_4g04640
malus_domestica	MD13G1215400.v1.1 MD15G1316700.v1.1 MD16G1226500.v1.1
prunus_persica	Prupe.1G040600_v2.0.a1 Prupe.1G048700_v2.0.a1
pyrus_communis	pycom13g18860
rosa_chinensis	RchiOBHm_Chr4g0393661 RchiOBHm_Chr4g0395421
rosa_laevigata	RLG00000009623 RLG00000009737
rosa_multiflora	Rmu_sc0004598.1_g000006 Rmu_sc0010124.1_g000005 Rmu_sc0010817.1_g000005
rosa_roxburghii	Rroxscaffold_5G00338850 Rroxscaffold_5G00340380
rosa_rugosa	Rorug03G0357200 Rorug03G0371800.1
rosa_samantha	Rh4AG048500 Rh4AG059800 Rh4BG044900 Rh4BG058400 Rh4CG052000 Rh4CG064100
rosa_wichuraiana	Rw0G003320 Rw0G022520 Rw4G003850 Rw4G004790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1371
Acc16I	TGCGCA	1 cut(s)	349
Acc36I	ACCTGC	1 cut(s)	945
AccB1I	GGYRCC	1 cut(s)	261
AccB7I	CCANNNNNTGG	3 cut(s)	219, 271, 963
AccBSI	CCGCTC	1 cut(s)	405
AccI	GTMKAC	3 cut(s)	425, 1104, 1350
AccII	CGCG	2 cut(s)	501, 951
AciI	CCGC	4 cut(s)	405, 1086, 1664, 1760
AclWI	GGATC	2 cut(s)	817, 1589
AcyI	GRCGYC	1 cut(s)	1251
AdeI	CACNNNGTG	1 cut(s)	484
AfaI	GTAC	4 cut(s)	452, 520, 904, 1895
AfiI	CCNNNNNNNGG	6 cut(s)	67, 219, 271, 963, 1722, 2023
AflIII	ACRYGT	3 cut(s)	428, 888, 1128
AhlI	ACTAGT	1 cut(s)	1120
AjiI	CACGTC	1 cut(s)	649
AjnI	CCWGG	4 cut(s)	66, 218, 674, 1402
AjuI	GAANNNNNNNTTGG	2 cut(s)	1541, 1573
Alw21I	GWGCWC	5 cut(s)	339, 478, 489, 1416, 1866
Alw26I	GTCTC	5 cut(s)	142, 523, 1006, 1684, 2040
Alw44I	GTGCAC	1 cut(s)	474
AlwI	GGATC	2 cut(s)	817, 1589
Ama87I	CYCGRG	1 cut(s)	1598
AoxI	GGCC	3 cut(s)	69, 253, 273
ApaLI	GTGCAC	1 cut(s)	474
ApeKI	GCWGC	5 cut(s)	1060, 1421, 1529, 1643, 1719
Asp700I	GAANNNNTTC	1 cut(s)	641
AspLEI	GCGC	3 cut(s)	350, 439, 951
AsuHPI	GGTGA	5 cut(s)	105, 386, 581, 1898, 2006
AvaI	CYCGRG	1 cut(s)	1598
BaeGI	GKGCMC	3 cut(s)	311, 478, 1033
BanI	GGYRCC	1 cut(s)	261
BbsI	GAAGAC	1 cut(s)	634
Bbv12I	GWGCWC	5 cut(s)	339, 478, 489, 1416, 1866
BbvI	GCAGC	5 cut(s)	1072, 1408, 1516, 1630, 1731
BccI	CCATC	6 cut(s)	59, 70, 236, 724, 1150, 1819
BceAI	ACGGC	1 cut(s)	268
BcgI	CGANNNNNNTGC	2 cut(s)	875, 909
BciT130I	CCWGG	4 cut(s)	68, 220, 676, 1404
BciVI	GTATCC	1 cut(s)	1064
BcoDI	GTCTC	5 cut(s)	142, 523, 1006, 1684, 2040
BcuI	ACTAGT	1 cut(s)	1120
BfaI	CTAG	4 cut(s)	512, 771, 1121, 1482
BfmI	CTRYAG	1 cut(s)	1717
BfuAI	ACCTGC	1 cut(s)	945
BfuI	GTATCC	1 cut(s)	1064
BisI	GCNGC	6 cut(s)	1061, 1422, 1530, 1644, 1665, 1720
BlsI	GCNGC	6 cut(s)	1062, 1423, 1531, 1645, 1666, 1721
Bme1390I	CCNGG	4 cut(s)	68, 220, 676, 1404
BmeT110I	CYCGRG	1 cut(s)	1598
BmgBI	CACGTC	1 cut(s)	649
BmiI	GGNNCC	1 cut(s)	263
BmrFI	CCNGG	4 cut(s)	68, 220, 676, 1404
BmsI	GCATC	5 cut(s)	227, 359, 642, 793, 844
BpiI	GAAGAC	1 cut(s)	634
BpmI	CTGGAG	1 cut(s)	1386
BpuEI	CTTGAG	1 cut(s)	385
BsaAI	YACGTR	1 cut(s)	429
BsaHI	GRCGYC	1 cut(s)	1251
BsaJI	CCNNGG	5 cut(s)	66, 250, 270, 1066, 1797
BsaWI	WCCGGW	1 cut(s)	781
BsaXI	ACNNNNNCTCC	6 cut(s)	972, 1002, 1272, 1302, 1602, 1632
Bsc4I	CCNNNNNNNGG	6 cut(s)	67, 219, 271, 963, 1722, 2023
Bse118I	RCCGGY	1 cut(s)	2007
Bse3DI	GCAATG	2 cut(s)	213, 1229
BseBI	CCWGG	4 cut(s)	68, 220, 676, 1404
BseDI	CCNNGG	5 cut(s)	66, 250, 270, 1066, 1797
BseGI	GGATG	2 cut(s)	62, 702
BseLI	CCNNNNNNNGG	6 cut(s)	67, 219, 271, 963, 1722, 2023
BseMI	GCAATG	2 cut(s)	213, 1229
BseRI	GAGGAG	1 cut(s)	1895
BseSI	GKGCMC	3 cut(s)	311, 478, 1033
BseXI	GCAGC	5 cut(s)	1072, 1408, 1516, 1630, 1731
BseYI	CCCAGC	1 cut(s)	44
BsgI	GTGCAG	1 cut(s)	1010
Bsh1236I	CGCG	2 cut(s)	501, 951
Bsh1285I	CGRYCG	1 cut(s)	505
BshFI	GGCC	3 cut(s)	71, 255, 275
BshNI	GGYRCC	1 cut(s)	261
BsiEI	CGRYCG	1 cut(s)	505
BsiHKAI	GWGCWC	5 cut(s)	339, 478, 489, 1416, 1866
BsiHKCI	CYCGRG	1 cut(s)	1598
BsiSI	CCGG	2 cut(s)	782, 2008
BslFI	GGGAC	2 cut(s)	374, 564
BslI	CCNNNNNNNGG	6 cut(s)	67, 219, 271, 963, 1722, 2023
BsmAI	GTCTC	5 cut(s)	142, 523, 1006, 1684, 2040
BsmBI	CGTCTC	1 cut(s)	142
BsmFI	GGGAC	2 cut(s)	374, 564
BsmI	GAATGC	1 cut(s)	742
BsnI	GGCC	3 cut(s)	71, 255, 275
BsoBI	CYCGRG	1 cut(s)	1598
Bsp1286I	GDGCHC	7 cut(s)	311, 339, 478, 489, 1033, 1416, 1866
Bsp143I	GATC	4 cut(s)	313, 822, 882, 1594
Bsp19I	CCATGG	1 cut(s)	1066
Bsp68I	TCGCGA	1 cut(s)	501
BspACI	CCGC	4 cut(s)	405, 1086, 1664, 1760
BspANI	GGCC	3 cut(s)	71, 255, 275
BspFNI	CGCG	2 cut(s)	501, 951
BspHI	TCATGA	1 cut(s)	441
BspLI	GGNNCC	1 cut(s)	263
BspMAI	CTGCAG	1 cut(s)	1721
BspMI	ACCTGC	1 cut(s)	945
BspPI	GGATC	2 cut(s)	817, 1589
BspT107I	GGYRCC	1 cut(s)	261
BsrBI	CCGCTC	1 cut(s)	405
BsrDI	GCAATG	2 cut(s)	213, 1229
BsrFI	RCCGGY	1 cut(s)	2007
BssAI	RCCGGY	1 cut(s)	2007
BssECI	CCNNGG	5 cut(s)	66, 250, 270, 1066, 1797
BssMI	GATC	4 cut(s)	313, 822, 882, 1594
BssNAI	GTATAC	1 cut(s)	426
BssNI	GRCGYC	1 cut(s)	1251
BssT1I	CCWWGG	3 cut(s)	270, 1066, 1797
Bst1107I	GTATAC	1 cut(s)	426
Bst2UI	CCWGG	4 cut(s)	68, 220, 676, 1404
Bst4CI	ACNGT	5 cut(s)	560, 629, 685, 902, 1238
Bst6I	CTCTTC	4 cut(s)	38, 188, 1872, 1975
BstACI	GRCGYC	1 cut(s)	1251
BstBAI	YACGTR	1 cut(s)	429
BstC8I	GCNNGC	5 cut(s)	776, 1114, 1487, 1713, 1717
BstDEI	CTNAG	1 cut(s)	1647
BstDSI	CCRYGG	2 cut(s)	250, 1066
BstF5I	GGATG	2 cut(s)	62, 702
BstFNI	CGCG	2 cut(s)	501, 951
BstHHI	GCGC	3 cut(s)	350, 439, 951
BstKTI	GATC	4 cut(s)	316, 825, 885, 1597
BstMAI	GTCTC	5 cut(s)	142, 523, 1006, 1684, 2040
BstMBI	GATC	4 cut(s)	313, 822, 882, 1594
BstMCI	CGRYCG	1 cut(s)	505
BstMWI	GCNNNNNNNGC	7 cut(s)	315, 946, 1250, 1313, 1427, 1757, 1828
BstNI	CCWGG	4 cut(s)	68, 220, 676, 1404
BstNSI	RCATGY	3 cut(s)	892, 1132, 1489
BstSCI	CCNGG	4 cut(s)	66, 218, 674, 1402
BstSFI	CTRYAG	1 cut(s)	1717
BstSLI	GKGCMC	3 cut(s)	311, 478, 1033
BstUI	CGCG	2 cut(s)	501, 951
BstV1I	GCAGC	5 cut(s)	1072, 1408, 1516, 1630, 1731
BstV2I	GAAGAC	1 cut(s)	634
BstX2I	RGATCY	1 cut(s)	822
BstXI	CCANNNNNNTGG	2 cut(s)	1219, 1804
BstYI	RGATCY	1 cut(s)	822
BstZ17I	GTATAC	1 cut(s)	426
BsuI	GTATCC	1 cut(s)	1064
BsuRI	GGCC	3 cut(s)	71, 255, 275
BtgI	CCRYGG	2 cut(s)	250, 1066
BtrI	CACGTC	1 cut(s)	649
BtsCI	GGATG	2 cut(s)	62, 702
BtsIMutI	CAGTG	2 cut(s)	634, 690
BtuMI	TCGCGA	1 cut(s)	501
BveI	ACCTGC	1 cut(s)	945
Cac8I	GCNNGC	5 cut(s)	776, 1114, 1487, 1713, 1717
CciI	TCATGA	1 cut(s)	441
CfoI	GCGC	3 cut(s)	350, 439, 951
Cfr10I	RCCGGY	1 cut(s)	2007
CseI	GACGC	1 cut(s)	1259
Csp6I	GTAC	4 cut(s)	451, 519, 903, 1894
CviQI	GTAC	4 cut(s)	451, 519, 903, 1894
DdeI	CTNAG	1 cut(s)	1647
DpnI	GATC	4 cut(s)	315, 824, 884, 1596
DpnII	GATC	4 cut(s)	313, 822, 882, 1594
DraIII	CACNNNGTG	1 cut(s)	484
Eam1104I	CTCTTC	4 cut(s)	38, 188, 1872, 1975
EarI	CTCTTC	4 cut(s)	38, 188, 1872, 1975
EciI	GGCGGA	1 cut(s)	1101
Eco130I	CCWWGG	3 cut(s)	270, 1066, 1797
Eco88I	CYCGRG	1 cut(s)	1598
EcoRII	CCWGG	4 cut(s)	66, 218, 674, 1402
EcoT14I	CCWWGG	3 cut(s)	270, 1066, 1797
EcoT22I	ATGCAT	2 cut(s)	1231, 1491
ErhI	CCWWGG	3 cut(s)	270, 1066, 1797
Esp3I	CGTCTC	1 cut(s)	142
FaqI	GGGAC	2 cut(s)	374, 564
FauI	CCCGC	1 cut(s)	1753
FblI	GTMKAC	3 cut(s)	425, 1104, 1350
Fnu4HI	GCNGC	6 cut(s)	1061, 1422, 1530, 1644, 1665, 1720
FokI	GGATG	2 cut(s)	49, 709
Fsp4HI	GCNGC	6 cut(s)	1061, 1422, 1530, 1644, 1665, 1720
FspAI	RTGCGCAY	1 cut(s)	349
FspBI	CTAG	4 cut(s)	512, 771, 1121, 1482
FspI	TGCGCA	1 cut(s)	349
GlaI	GCGC	3 cut(s)	349, 438, 950
GluI	GCNGC	6 cut(s)	1061, 1422, 1530, 1644, 1665, 1720
GsaI	CCCAGC	1 cut(s)	48
GsuI	CTGGAG	1 cut(s)	1386
HaeIII	GGCC	3 cut(s)	71, 255, 275
HapII	CCGG	2 cut(s)	782, 2008
HgaI	GACGC	1 cut(s)	1259
HhaI	GCGC	3 cut(s)	350, 439, 951
Hin1I	GRCGYC	1 cut(s)	1251
Hin6I	GCGC	3 cut(s)	348, 437, 949
HinP1I	GCGC	3 cut(s)	348, 437, 949
HincII	GTYRAC	1 cut(s)	1518
HindII	GTYRAC	1 cut(s)	1518
HindIII	AAGCTT	2 cut(s)	1356, 1464
HinfI	GANTC	6 cut(s)	377, 755, 917, 953, 1677, 1769
HpaII	CCGG	2 cut(s)	782, 2008
HphI	GGTGA	5 cut(s)	105, 386, 581, 1898, 2006
Hpy166II	GTNNAC	7 cut(s)	426, 476, 1105, 1126, 1351, 1518, 1543
Hpy188I	TCNGA	4 cut(s)	236, 402, 1979, 1997
Hpy188III	TCNNGA	9 cut(s)	119, 442, 500, 512, 526, 1598, 1681, 1805, 2045
Hpy8I	GTNNAC	7 cut(s)	426, 476, 1105, 1126, 1351, 1518, 1543
Hpy99I	CGWCG	2 cut(s)	650, 948
HpyAV	CCTTC	9 cut(s)	120, 139, 339, 596, 631, 1445, 1446, 1829, 1934
HpyCH4III	ACNGT	5 cut(s)	560, 629, 685, 902, 1238
HpyCH4IV	ACGT	3 cut(s)	428, 648, 943
HpyF10VI	GCNNNNNNNGC	7 cut(s)	315, 946, 1250, 1313, 1427, 1757, 1828
HpyF3I	CTNAG	1 cut(s)	1647
HpySE526I	ACGT	3 cut(s)	428, 648, 943
Hsp92I	GRCGYC	1 cut(s)	1251
HspAI	GCGC	3 cut(s)	348, 437, 949
Kzo9I	GATC	4 cut(s)	313, 822, 882, 1594
Lsp1109I	GCAGC	5 cut(s)	1072, 1408, 1516, 1630, 1731
LweI	GCATC	5 cut(s)	227, 359, 642, 793, 844
MaeI	CTAG	4 cut(s)	512, 771, 1121, 1482
MaeII	ACGT	3 cut(s)	428, 648, 943
MaeIII	GTNAC	2 cut(s)	1145, 1904
MalI	GATC	4 cut(s)	315, 824, 884, 1596
MbiI	CCGCTC	1 cut(s)	405
MboI	GATC	4 cut(s)	313, 822, 882, 1594
MboII	GAAGA	5 cut(s)	25, 175, 634, 1889, 1992
MflI	RGATCY	1 cut(s)	822
MhlI	GDGCHC	7 cut(s)	311, 339, 478, 489, 1033, 1416, 1866
MluCI	AATT	2 cut(s)	1556, 1989
MlyI	GAGTC	3 cut(s)	386, 911, 1686
MmeI	TCCRAC	5 cut(s)	174, 441, 1437, 1957, 1992
Mph1103I	ATGCAT	2 cut(s)	1231, 1491
MroXI	GAANNNNTTC	1 cut(s)	641
MseI	TTAA	3 cut(s)	810, 1152, 1734
MslI	CAYNNNNRTG	7 cut(s)	446, 831, 1154, 1217, 1239, 1245, 1548
MspA1I	CMGCKG	1 cut(s)	1722
MspI	CCGG	2 cut(s)	782, 2008
MspR9I	CCNGG	4 cut(s)	68, 220, 676, 1404
Mva1269I	GAATGC	1 cut(s)	742
MvaI	CCWGG	4 cut(s)	68, 220, 676, 1404
MvnI	CGCG	2 cut(s)	501, 951
MwoI	GCNNNNNNNGC	7 cut(s)	315, 946, 1250, 1313, 1427, 1757, 1828
NcoI	CCATGG	1 cut(s)	1066
NdeII	GATC	4 cut(s)	313, 822, 882, 1594
NlaIV	GGNNCC	1 cut(s)	263
NmuCI	GTSAC	1 cut(s)	1904
NruI	TCGCGA	1 cut(s)	501
NsbI	TGCGCA	1 cut(s)	349
NsiI	ATGCAT	2 cut(s)	1231, 1491
NspI	RCATGY	3 cut(s)	892, 1132, 1489
PaeI	GCATGC	1 cut(s)	1489
PagI	TCATGA	1 cut(s)	441
PciI	ACATGT	2 cut(s)	888, 1128
PctI	GAATGC	1 cut(s)	742
PdmI	GAANNNNTTC	1 cut(s)	641
PfeI	GAWTC	3 cut(s)	755, 953, 1769
PflMI	CCANNNNNTGG	3 cut(s)	219, 271, 963
PfoI	TCCNGGA	1 cut(s)	674
PkrI	GCNGC	6 cut(s)	1062, 1423, 1531, 1645, 1666, 1721
PleI	GAGTC	3 cut(s)	385, 911, 1685
PpsI	GAGTC	3 cut(s)	385, 911, 1685
Ppu21I	YACGTR	1 cut(s)	429
PscI	ACATGT	2 cut(s)	888, 1128
PsiI	TTATAA	1 cut(s)	1371
Psp6I	CCWGG	4 cut(s)	66, 218, 674, 1402
PspFI	CCCAGC	1 cut(s)	44
PspGI	CCWGG	4 cut(s)	66, 218, 674, 1402
PspN4I	GGNNCC	1 cut(s)	263
PstI	CTGCAG	1 cut(s)	1721
PsuI	RGATCY	1 cut(s)	822
PvuII	CAGCTG	1 cut(s)	1722
RruI	TCGCGA	1 cut(s)	501
RsaI	GTAC	4 cut(s)	452, 520, 904, 1895
RsaNI	GTAC	4 cut(s)	451, 519, 903, 1894
RseI	CAYNNNNRTG	7 cut(s)	446, 831, 1154, 1217, 1239, 1245, 1548
SaqAI	TTAA	3 cut(s)	810, 1152, 1734
SatI	GCNGC	6 cut(s)	1061, 1422, 1530, 1644, 1665, 1720
Sau3AI	GATC	4 cut(s)	313, 822, 882, 1594
SchI	GAGTC	3 cut(s)	386, 911, 1686
ScrFI	CCNGG	4 cut(s)	68, 220, 676, 1404
SduI	GDGCHC	7 cut(s)	311, 339, 478, 489, 1033, 1416, 1866
SfaNI	GCATC	5 cut(s)	227, 359, 642, 793, 844
SfcI	CTRYAG	1 cut(s)	1717
SmiMI	CAYNNNNRTG	7 cut(s)	446, 831, 1154, 1217, 1239, 1245, 1548
SmlI	CTYRAG	1 cut(s)	364
SmoI	CTYRAG	1 cut(s)	364
SpeI	ACTAGT	1 cut(s)	1120
SphI	GCATGC	1 cut(s)	1489
Sse9I	AATT	2 cut(s)	1556, 1989
SsiI	CCGC	4 cut(s)	405, 1086, 1664, 1760
SspI	AATATT	1 cut(s)	1584
SspMI	CTAG	4 cut(s)	512, 771, 1121, 1482
StyD4I	CCNGG	4 cut(s)	66, 218, 674, 1402
StyI	CCWWGG	3 cut(s)	270, 1066, 1797
TaaI	ACNGT	5 cut(s)	560, 629, 685, 902, 1238
TaiI	ACGT	3 cut(s)	431, 651, 946
TaqI	TCGA	7 cut(s)	489, 645, 885, 971, 1444, 1682, 2044
TaqII	GACCGA	1 cut(s)	519
TasI	AATT	2 cut(s)	1556, 1989
TatI	WGTACW	1 cut(s)	902
TauI	GCSGC	1 cut(s)	1667
TfiI	GAWTC	3 cut(s)	755, 953, 1769
Tru1I	TTAA	3 cut(s)	810, 1152, 1734
Tru9I	TTAA	3 cut(s)	810, 1152, 1734
TscAI	CASTG	2 cut(s)	634, 690
TseFI	GTSAC	1 cut(s)	1904
TseI	GCWGC	5 cut(s)	1060, 1421, 1529, 1643, 1719
Tsp45I	GTSAC	1 cut(s)	1904
TspRI	CASTG	2 cut(s)	634, 690
Van91I	CCANNNNNTGG	3 cut(s)	219, 271, 963
VneI	GTGCAC	1 cut(s)	474
XbaI	TCTAGA	1 cut(s)	511
XceI	RCATGY	3 cut(s)	892, 1132, 1489
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1719, 2024
XmiI	GTMKAC	3 cut(s)	425, 1104, 1350
XmnI	GAANNNNTTC	1 cut(s)	641
XspI	CTAG	4 cut(s)	512, 771, 1121, 1482
Zsp2I	ATGCAT	2 cut(s)	1231, 1491

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.