Rroxscaffold_5G00340380

Pentatricopeptide repeat-containing protein At4g02750-like

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000005
Physical Location & Seq
Reverse (-)
8817222 .. 8819933
2712 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_5G00340380.1

Sequence Viewer

Length: 1386 bp
ATGCCTGTGAGGGATGTTCAGGCTTGGAATGCGATGATAGTTGGGTATATAGAAAATGGGTGTGTTGAACTTGCAGACGGGTTGTTTCAGAAGATGCCTGAGCGGGATTTTGAATCTTGGACGCAAATGGTAGATGGGTTGGTCGGGGCCCAAAGAGTTAATGATGCCTTGAAGCTATTCATGGAGATGCCAGAGAAATGTCCCAAAACATGGAACTCGATCCTTTTGAAATTAATAAGAAATGAGCTCACTAGAGAAGCTCATGCTTGTCTTGAGAAGACGCCTTACAGAGATGTCATATCATGGACAAATTTGATTGTTGGATATTTTGGAATCAGAGAGGTTGGCGTCGCAATTAAACTTTTTGAGTCCATGCCTACTCGAGATACAACTGCATGGAATGCCACGATATTTGGATTAAATGAAAACGATCGTGGTGAAGAAGGTTTGAAGCTTTTCATGAGAATGAAAGAATCAGGGCTATCACCAGACAAAGCTACATTTACTAGTGTTTTGACAATCTGTTCAGACTTACCAACCTTACACCTAGGTAGACAAACTCATGCACATATAGTAAAAGCAGGATTTGGTGACATTGTTTCAGTTTCTAATGCTATGGTTACCATGTATGCAAGATGTGGGAACATGGATTCTGCTTTACTGGAATTCTCGTCCATGCCTAGCCGTGATGTCATCTCTTGGAATTCTATAATATGTGGATATGCACATCATGGGAATGGTGATGTAGCTTTGGATATGTTCGAACGCATGAGATCAACAGATGTTCATCCAAATCCTATAACATTTGTCAATGTTCTATCCGCTTGTAGCCATGCAGGGTTGGTCAGCCAAGGTAAATACTACTTTGACATGATGAGATACACGTATTTTCTTCAACCTACAACTGAGCATTATACATGTATAGTTGATTTATTCGGTAGATTTGGGCTTATAGATGAGGCAATGAGTTTTCTAGATCAAATGAAAGCCGATGGATTTGAAATTCCTGCTAGTGTATGGGGGGCATTACTTGGAGCATGTAGAATCCACAAGAATATTGAGGTGGGTGAGATTGCTGGAGAGAGGGTTCTGGAAATAGAGCCTGGCAACTCCGGTGTATATTTGATTTTGGCAGAAATGTATTTGAGTAATGGAAGAAGAGAAGATGCTGGGCGGATTAAGGCAAGGATGAAAGAGAAAGGAGTCAAGAAGCAACCGGGGTGCAGTTGGATCGAGGTAAACAACATTGGGAATGTATTTCTTTCAGGGGACAAATCCCACCCCAAATTTAGGAAGATCTATTATGTGTTAGAATTACTGTATATAGAGATTGAGACTCAGTTTCCAAAACCTGCTGCATTGCTTCAACAAGTACAAGTTCCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

461

Amino Acids

51.86

Weight (kDa)

5.83

Isoelectric Point (pI)

37.24

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PPR_2 PF13041 129 - 175 2.8e-08 PPR repeat family
PPR_2 PF13041 229 - 277 2e-10 PPR repeat family
PPR PF01535 232 - 259 1e-06 PPR repeat
E_motif PF20431 350 - 412 3.6e-19 E motif
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 1360
AccB7I CCANNNNNTGG 1 cut(s) 210
AccBSI CCGCTC 1 cut(s) 103
AccI GTMKAC 1 cut(s) 553
AciI CCGC 3 cut(s) 103, 822, 1174
AclWI GGATC 2 cut(s) 214, 1238
AcsI RAATTY 5 cut(s) 310, 665, 703, 1002, 1286
AcyI GRCGYC 2 cut(s) 281, 348
AfaI GTAC 1 cut(s) 1374
AfiI CCNNNNNNNGG 2 cut(s) 210, 1290
AflIII ACRYGT 2 cut(s) 882, 917
AgsI TTSAA 8 cut(s) 68, 113, 172, 229, 451, 896, 1001, 1367
AhlI ACTAGT 1 cut(s) 506
AjnI CCWGG 1 cut(s) 1102
AloI GAACNNNNNNTCC 2 cut(s) 1071, 1103
AluBI AGCT 6 cut(s) 175, 247, 260, 454, 497, 749
AluI AGCT 6 cut(s) 175, 247, 260, 454, 497, 749
Alw21I GWGCWC 1 cut(s) 249
Alw26I GTCTC 1 cut(s) 1328
AlwI GGATC 2 cut(s) 214, 1238
Ama87I CYCGRG 1 cut(s) 381
AoxI GGCC 1 cut(s) 147
ApaI GGGCCC 1 cut(s) 151
ApeKI GCWGC 1 cut(s) 1355
ApoI RAATTY 5 cut(s) 310, 665, 703, 1002, 1286
AseI ATTAAT 1 cut(s) 233
Asp700I GAANNNNTTC 2 cut(s) 176, 455
AspA2I CCTAGG 1 cut(s) 547
AspS9I GGNCC 2 cut(s) 147, 148
AsuC2I CCSGG 1 cut(s) 1218
AsuHPI GGTGA 5 cut(s) 449, 477, 602, 752, 1079
AsuII TTCGAA 1 cut(s) 762
AvaI CYCGRG 1 cut(s) 381
AvrII CCTAGG 1 cut(s) 547
BaeGI GKGCMC 1 cut(s) 151
BanII GRGCYC 2 cut(s) 151, 249
BarI GAAGNNNNNNTAC 2 cut(s) 269, 301
BbsI GAAGAC 1 cut(s) 284
Bbv12I GWGCWC 1 cut(s) 249
BbvI GCAGC 1 cut(s) 1342
BccI CCATC 2 cut(s) 128, 986
BceAI ACGGC 1 cut(s) 669
BcgI CGANNNNNNTGC 2 cut(s) 1213, 1247
BciT130I CCWGG 1 cut(s) 1104
BcnI CCSGG 1 cut(s) 1218
BcoDI GTCTC 1 cut(s) 1328
BcuI ACTAGT 1 cut(s) 506
BfaI CTAG 6 cut(s) 252, 507, 548, 681, 974, 1011
BfuAI ACCTGC 1 cut(s) 1360
BglII AGATCT 1 cut(s) 1296
BisI GCNGC 1 cut(s) 1356
BlnI CCTAGG 1 cut(s) 547
BlsI GCNGC 1 cut(s) 1357
Bme1390I CCNGG 2 cut(s) 1104, 1218
BmeT110I CYCGRG 1 cut(s) 381
BmgT120I GGNCC 2 cut(s) 147, 148
BmiI GGNNCC 2 cut(s) 148, 149
BmrFI CCNGG 2 cut(s) 1104, 1218
BmsI GCATC 4 cut(s) 84, 154, 177, 1156
BpiI GAAGAC 1 cut(s) 284
BpmI CTGGAG 1 cut(s) 1098
Bpu10I CCTNAGC 1 cut(s) 99
Bpu14I TTCGAA 1 cut(s) 762
BpuEI CTTGAG 1 cut(s) 293
BpuMI CCSGG 1 cut(s) 1218
BsaAI YACGTR 1 cut(s) 885
BsaBI GATNNNNATC 1 cut(s) 786
BsaHI GRCGYC 2 cut(s) 281, 348
BsaJI CCNNGG 3 cut(s) 547, 850, 1217
BsaWI WCCGGW 1 cut(s) 1112
BsaXI ACNNNNNCTCC 2 cut(s) 1071, 1101
Bsc4I CCNNNNNNNGG 2 cut(s) 210, 1290
Bse1I ACTGG 1 cut(s) 666
Bse3DI GCAATG 2 cut(s) 969, 1358
Bse8I GATNNNNATC 1 cut(s) 786
BseBI CCWGG 1 cut(s) 1104
BseDI CCNNGG 3 cut(s) 547, 850, 1217
BseGI GGATG 3 cut(s) 19, 787, 1194
BseJI GATNNNNATC 1 cut(s) 786
BseLI CCNNNNNNNGG 2 cut(s) 210, 1290
BseMI GCAATG 2 cut(s) 969, 1358
BseMII CTCAG 3 cut(s) 90, 897, 1352
BseNI ACTGG 1 cut(s) 666
BseSI GKGCMC 1 cut(s) 151
BseXI GCAGC 1 cut(s) 1342
BseYI CCCAGC 1 cut(s) 1169
BsgI GTGCAG 1 cut(s) 1243
Bsh1285I CGRYCG 1 cut(s) 433
BshFI GGCC 1 cut(s) 149
BsiEI CGRYCG 1 cut(s) 433
BsiHKAI GWGCWC 1 cut(s) 249
BsiHKCI CYCGRG 1 cut(s) 381
BsiSI CCGG 2 cut(s) 1113, 1217
BslFI GGGAC 2 cut(s) 186, 1283
BslI CCNNNNNNNGG 2 cut(s) 210, 1290
BsmAI GTCTC 1 cut(s) 1328
BsmFI GGGAC 2 cut(s) 186, 1283
BsmI GAATGC 2 cut(s) 34, 406
BsnI GGCC 1 cut(s) 149
BsoBI CYCGRG 1 cut(s) 381
Bsp119I TTCGAA 1 cut(s) 762
Bsp120I GGGCCC 1 cut(s) 147
Bsp1286I GDGCHC 2 cut(s) 151, 249
Bsp143I GATC 6 cut(s) 219, 430, 773, 976, 1230, 1296
BspACI CCGC 3 cut(s) 103, 822, 1174
BspANI GGCC 1 cut(s) 149
BspCNI CTCAG 3 cut(s) 91, 898, 1351
BspHI TCATGA 1 cut(s) 459
BspLI GGNNCC 2 cut(s) 148, 149
BspMI ACCTGC 1 cut(s) 1360
BspPI GGATC 2 cut(s) 214, 1238
BspT104I TTCGAA 1 cut(s) 762
BsrBI CCGCTC 1 cut(s) 103
BsrDI GCAATG 2 cut(s) 969, 1358
BsrI ACTGG 1 cut(s) 666
BssECI CCNNGG 3 cut(s) 547, 850, 1217
BssMI GATC 6 cut(s) 219, 430, 773, 976, 1230, 1296
BssNI GRCGYC 2 cut(s) 281, 348
BssT1I CCWWGG 2 cut(s) 547, 850
Bst2UI CCWGG 1 cut(s) 1104
Bst4CI ACNGT 1 cut(s) 1320
Bst6I CTCTTC 1 cut(s) 1153
BstACI GRCGYC 2 cut(s) 281, 348
BstAPI GCANNNNNTGC 1 cut(s) 401
BstBAI YACGTR 1 cut(s) 885
BstBI TTCGAA 1 cut(s) 762
BstDEI CTNAG 3 cut(s) 99, 906, 1338
BstEII GGTNACC 1 cut(s) 619
BstF5I GGATG 3 cut(s) 19, 787, 1194
BstKTI GATC 6 cut(s) 222, 433, 776, 979, 1233, 1299
BstMAI GTCTC 1 cut(s) 1328
BstMBI GATC 6 cut(s) 219, 430, 773, 976, 1230, 1296
BstMCI CGRYCG 1 cut(s) 433
BstMWI GCNNNNNNNGC 2 cut(s) 29, 401
BstNI CCWGG 1 cut(s) 1104
BstNSI RCATGY 2 cut(s) 921, 1041
BstPI GGTNACC 1 cut(s) 619
BstSCI CCNGG 2 cut(s) 1102, 1216
BstSLI GKGCMC 1 cut(s) 151
BstV1I GCAGC 1 cut(s) 1342
BstV2I GAAGAC 1 cut(s) 284
BstX2I RGATCY 1 cut(s) 1296
BstYI RGATCY 1 cut(s) 1296
BsuRI GGCC 1 cut(s) 149
BtgZI GCGATG 1 cut(s) 47
BtsCI GGATG 3 cut(s) 19, 787, 1194
BveI ACCTGC 1 cut(s) 1360
CciI TCATGA 1 cut(s) 459
Cfr13I GGNCC 2 cut(s) 147, 148
CseI GACGC 3 cut(s) 130, 289, 337
Csp6I GTAC 1 cut(s) 1373
CspCI CAANNNNNGTGG 2 cut(s) 394, 429
CviQI GTAC 1 cut(s) 1373
DdeI CTNAG 3 cut(s) 99, 906, 1338
DpnI GATC 6 cut(s) 221, 432, 775, 978, 1232, 1298
DpnII GATC 6 cut(s) 219, 430, 773, 976, 1230, 1296
Eam1104I CTCTTC 1 cut(s) 1153
EarI CTCTTC 1 cut(s) 1153
EciI GGCGGA 1 cut(s) 1189
Ecl136II GAGCTC 1 cut(s) 247
Eco130I CCWWGG 2 cut(s) 547, 850
Eco24I GRGCYC 2 cut(s) 151, 249
Eco53kI GAGCTC 1 cut(s) 247
Eco88I CYCGRG 1 cut(s) 381
Eco91I GGTNACC 1 cut(s) 619
EcoICRI GAGCTC 1 cut(s) 247
EcoO109I RGGNCCY 1 cut(s) 147
EcoO65I GGTNACC 1 cut(s) 619
EcoRI GAATTC 2 cut(s) 665, 703
EcoRII CCWGG 1 cut(s) 1102
EcoT14I CCWWGG 2 cut(s) 547, 850
EcoT38I GRGCYC 2 cut(s) 151, 249
ErhI CCWWGG 2 cut(s) 547, 850
FaqI GGGAC 2 cut(s) 186, 1283
FauI CCCGC 1 cut(s) 96
FblI GTMKAC 1 cut(s) 553
Fnu4HI GCNGC 1 cut(s) 1356
FokI GGATG 3 cut(s) 26, 774, 1201
FriOI GRGCYC 2 cut(s) 151, 249
Fsp4HI GCNGC 1 cut(s) 1356
FspBI CTAG 6 cut(s) 252, 507, 548, 681, 974, 1011
GluI GCNGC 1 cut(s) 1356
GsaI CCCAGC 1 cut(s) 1173
GsuI CTGGAG 1 cut(s) 1098
HaeIII GGCC 1 cut(s) 149
HapII CCGG 2 cut(s) 1113, 1217
HgaI GACGC 3 cut(s) 130, 289, 337
Hin1I GRCGYC 2 cut(s) 281, 348
HindIII AAGCTT 1 cut(s) 452
HinfI GANTC 8 cut(s) 113, 333, 368, 473, 650, 1044, 1203, 1336
HpaII CCGG 2 cut(s) 1113, 1217
HphI GGTGA 5 cut(s) 449, 477, 602, 752, 1079
Hpy166II GTNNAC 2 cut(s) 554, 1240
Hpy188I TCNGA 3 cut(s) 90, 338, 529
Hpy188III TCNNGA 6 cut(s) 272, 383, 460, 974, 1091, 1207
Hpy8I GTNNAC 2 cut(s) 554, 1240
Hpy99I CGWCG 1 cut(s) 353
HpyAV CCTTC 1 cut(s) 437
HpyCH4III ACNGT 1 cut(s) 1320
HpyCH4IV ACGT 1 cut(s) 884
HpyCH4V TGCA 8 cut(s) 74, 395, 566, 632, 725, 836, 1224, 1358
HpyF10VI GCNNNNNNNGC 2 cut(s) 29, 401
HpyF3I CTNAG 3 cut(s) 99, 906, 1338
HpySE526I ACGT 1 cut(s) 884
Hsp92I GRCGYC 2 cut(s) 281, 348
Kzo9I GATC 6 cut(s) 219, 430, 773, 976, 1230, 1296
LmnI GCTCC 1 cut(s) 1034
Lsp1109I GCAGC 1 cut(s) 1342
LweI GCATC 4 cut(s) 84, 154, 177, 1156
MaeI CTAG 6 cut(s) 252, 507, 548, 681, 974, 1011
MaeII ACGT 1 cut(s) 884
MaeIII GTNAC 2 cut(s) 590, 619
MalI GATC 6 cut(s) 221, 432, 775, 978, 1232, 1298
MbiI CCGCTC 1 cut(s) 103
MboI GATC 6 cut(s) 219, 430, 773, 976, 1230, 1296
MboII GAAGA 8 cut(s) 103, 289, 452, 884, 1167, 1170, 1175, 1306
MflI RGATCY 1 cut(s) 1296
MhlI GDGCHC 2 cut(s) 151, 249
MluCI AATT 8 cut(s) 230, 310, 354, 665, 703, 1002, 1286, 1313
MlyI GAGTC 3 cut(s) 377, 1212, 1330
MmeI TCCRAC 2 cut(s) 301, 1208
MnlI CCTC 6 cut(s) 3, 334, 952, 1054, 1077, 1228
MroXI GAANNNNTTC 2 cut(s) 176, 455
MseI TTAA 5 cut(s) 159, 233, 357, 419, 1179
MslI CAYNNNNRTG 3 cut(s) 185, 464, 735
MspI CCGG 2 cut(s) 1113, 1217
MspR9I CCNGG 2 cut(s) 1104, 1218
Mva1269I GAATGC 2 cut(s) 34, 406
MvaI CCWGG 1 cut(s) 1104
MwoI GCNNNNNNNGC 2 cut(s) 29, 401
NciI CCSGG 1 cut(s) 1218
NdeII GATC 6 cut(s) 219, 430, 773, 976, 1230, 1296
NlaIV GGNNCC 2 cut(s) 148, 149
NmuCI GTSAC 1 cut(s) 590
NspI RCATGY 2 cut(s) 921, 1041
NspV TTCGAA 1 cut(s) 762
PaeR7I CTCGAG 1 cut(s) 381
PagI TCATGA 1 cut(s) 459
PciI ACATGT 1 cut(s) 917
PctI GAATGC 2 cut(s) 34, 406
PdmI GAANNNNTTC 2 cut(s) 176, 455
PfeI GAWTC 5 cut(s) 113, 333, 473, 650, 1044
PflMI CCANNNNNTGG 1 cut(s) 210
PkrI GCNGC 1 cut(s) 1357
Ple19I CGATCG 1 cut(s) 433
PleI GAGTC 3 cut(s) 376, 1211, 1330
PpsI GAGTC 3 cut(s) 376, 1211, 1330
Ppu21I YACGTR 1 cut(s) 885
PscI ACATGT 1 cut(s) 917
PshBI ATTAAT 1 cut(s) 233
Psp124BI GAGCTC 1 cut(s) 249
Psp6I CCWGG 1 cut(s) 1102
PspEI GGTNACC 1 cut(s) 619
PspFI CCCAGC 1 cut(s) 1169
PspGI CCWGG 1 cut(s) 1102
PspN4I GGNNCC 2 cut(s) 148, 149
PspOMI GGGCCC 1 cut(s) 147
PspPI GGNCC 2 cut(s) 147, 148
PsuI RGATCY 1 cut(s) 1296
PvuI CGATCG 1 cut(s) 433
RsaI GTAC 1 cut(s) 1374
RsaNI GTAC 1 cut(s) 1373
RseI CAYNNNNRTG 3 cut(s) 185, 464, 735
SacI GAGCTC 1 cut(s) 249
SaqAI TTAA 5 cut(s) 159, 233, 357, 419, 1179
SatI GCNGC 1 cut(s) 1356
Sau3AI GATC 6 cut(s) 219, 430, 773, 976, 1230, 1296
Sau96I GGNCC 2 cut(s) 147, 148
SchI GAGTC 3 cut(s) 377, 1212, 1330
ScrFI CCNGG 2 cut(s) 1104, 1218
SduI GDGCHC 2 cut(s) 151, 249
SfaNI GCATC 4 cut(s) 84, 154, 177, 1156
Sfr274I CTCGAG 1 cut(s) 381
SfuI TTCGAA 1 cut(s) 762
SlaI CTCGAG 1 cut(s) 381
SmiMI CAYNNNNRTG 3 cut(s) 185, 464, 735
SmlI CTYRAG 2 cut(s) 272, 381
SmoI CTYRAG 2 cut(s) 272, 381
SpeI ACTAGT 1 cut(s) 506
Sse9I AATT 8 cut(s) 230, 310, 354, 665, 703, 1002, 1286, 1313
SsiI CCGC 3 cut(s) 103, 822, 1174
SspI AATATT 1 cut(s) 1057
SspMI CTAG 6 cut(s) 252, 507, 548, 681, 974, 1011
SstI GAGCTC 1 cut(s) 249
StyD4I CCNGG 2 cut(s) 1102, 1216
StyI CCWWGG 2 cut(s) 547, 850
TaaI ACNGT 1 cut(s) 1320
TaiI ACGT 1 cut(s) 887
TaqI TCGA 4 cut(s) 218, 382, 762, 1233
TasI AATT 8 cut(s) 230, 310, 354, 665, 703, 1002, 1286, 1313
TatI WGTACW 1 cut(s) 1372
TfiI GAWTC 5 cut(s) 113, 333, 473, 650, 1044
Tru1I TTAA 5 cut(s) 159, 233, 357, 419, 1179
Tru9I TTAA 5 cut(s) 159, 233, 357, 419, 1179
TseFI GTSAC 1 cut(s) 590
TseI GCWGC 1 cut(s) 1355
Tsp45I GTSAC 1 cut(s) 590
TspDTI ATGAA 7 cut(s) 169, 438, 448, 482, 776, 998, 1205
Van91I CCANNNNNTGG 1 cut(s) 210
VspI ATTAAT 1 cut(s) 233
XapI RAATTY 5 cut(s) 310, 665, 703, 1002, 1286
XbaI TCTAGA 1 cut(s) 973
XceI RCATGY 2 cut(s) 921, 1041
XhoI CTCGAG 1 cut(s) 381
XmaJI CCTAGG 1 cut(s) 547
XmiI GTMKAC 1 cut(s) 553
XmnI GAANNNNTTC 2 cut(s) 176, 455
XspI CTAG 6 cut(s) 252, 507, 548, 681, 974, 1011
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.