Pentatricopeptide repeat-containing protein At4g02750-like
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G23330 AT3G23330 |
| fragaria_vesca | FvH4_4g03820 FvH4_4g04640 |
| malus_domestica | MD13G1215400.v1.1 MD15G1316700.v1.1 MD16G1226500.v1.1 |
| prunus_persica | Prupe.1G040600_v2.0.a1 Prupe.1G048700_v2.0.a1 |
| pyrus_communis | pycom13g18860 |
| rosa_chinensis | RchiOBHm_Chr4g0393661 RchiOBHm_Chr4g0395421 |
| rosa_laevigata | RLG00000009623 RLG00000009737 |
| rosa_multiflora | Rmu_sc0004598.1_g000006 Rmu_sc0010124.1_g000005 Rmu_sc0010817.1_g000005 |
| rosa_roxburghii | Rroxscaffold_5G00338850 Rroxscaffold_5G00340380 |
| rosa_rugosa | Rorug03G0357200 Rorug03G0371800.1 |
| rosa_samantha | Rh4AG048500 Rh4AG059800 Rh4BG044900 Rh4BG058400 Rh4CG052000 Rh4CG064100 |
| rosa_wichuraiana | Rw0G003320 Rw0G022520 Rw4G003850 Rw4G004790 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccBSI | CCGCTC | 1 cut(s) | 745 |
| AccI | GTMKAC | 1 cut(s) | 1488 |
| AccII | CGCG | 1 cut(s) | 219 |
| AciI | CCGC | 8 cut(s) | 54, 219, 437, 745, 1034, 1223, 1359, 1811 |
| AclWI | GGATC | 2 cut(s) | 673, 1946 |
| AcsI | RAATTY | 6 cut(s) | 391, 508, 1307, 1345, 1644, 1928 |
| AcvI | CACGTG | 2 cut(s) | 201, 445 |
| AfaI | GTAC | 2 cut(s) | 441, 1271 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 201 |
| AflIII | ACRYGT | 4 cut(s) | 442, 444, 610, 1559 |
| AhlI | ACTAGT | 1 cut(s) | 1148 |
| AjiI | CACGTC | 1 cut(s) | 611 |
| AjnI | CCWGG | 2 cut(s) | 851, 1858 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 1059, 1091 |
| AluBI | AGCT | 5 cut(s) | 166, 817, 902, 1096, 1391 |
| AluI | AGCT | 5 cut(s) | 166, 817, 902, 1096, 1391 |
| Alw26I | GTCTC | 1 cut(s) | 1970 |
| AlwI | GGATC | 2 cut(s) | 673, 1946 |
| AlwNI | CAGNNNCTG | 1 cut(s) | 166 |
| Ama87I | CYCGRG | 3 cut(s) | 624, 740, 1023 |
| AoxI | GGCC | 1 cut(s) | 1121 |
| ApeKI | GCWGC | 1 cut(s) | 2000 |
| ApoI | RAATTY | 6 cut(s) | 391, 508, 1307, 1345, 1644, 1928 |
| AseI | ATTAAT | 2 cut(s) | 255, 801 |
| Asp700I | GAANNNNTTC | 2 cut(s) | 167, 1097 |
| AspS9I | GGNCC | 1 cut(s) | 1121 |
| AsuC2I | CCSGG | 3 cut(s) | 313, 406, 1746 |
| AsuHPI | GGTGA | 7 cut(s) | 22, 443, 784, 1091, 1361, 1394, 1721 |
| AsuII | TTCGAA | 1 cut(s) | 1404 |
| AvaI | CYCGRG | 3 cut(s) | 624, 740, 1023 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 431, 464 |
| BanII | GRGCYC | 2 cut(s) | 891, 1746 |
| BbrPI | CACGTG | 2 cut(s) | 201, 445 |
| BbvCI | CCTCAGC | 1 cut(s) | 717 |
| BbvI | GCAGC | 1 cut(s) | 1987 |
| BccI | CCATC | 6 cut(s) | 134, 332, 446, 632, 1132, 1628 |
| BceAI | ACGGC | 1 cut(s) | 63 |
| BciT130I | CCWGG | 2 cut(s) | 853, 1860 |
| BclI | TGATCA | 1 cut(s) | 1231 |
| BcnI | CCSGG | 3 cut(s) | 313, 406, 1746 |
| BcoDI | GTCTC | 1 cut(s) | 1970 |
| BcuI | ACTAGT | 1 cut(s) | 1148 |
| BfaI | CTAG | 3 cut(s) | 600, 894, 1149 |
| BisI | GCNGC | 3 cut(s) | 220, 1035, 2001 |
| BlsI | GCNGC | 3 cut(s) | 221, 1036, 2002 |
| Bme1390I | CCNGG | 5 cut(s) | 313, 406, 853, 1746, 1860 |
| BmeT110I | CYCGRG | 3 cut(s) | 624, 740, 1023 |
| BmgBI | CACGTC | 1 cut(s) | 611 |
| BmgT120I | GGNCC | 1 cut(s) | 1121 |
| BmrFI | CCNGG | 5 cut(s) | 313, 406, 853, 1746, 1860 |
| BmsI | GCATC | 8 cut(s) | 238, 309, 447, 796, 819, 1511, 1798, 2012 |
| BpmI | CTGGAG | 2 cut(s) | 72, 534 |
| Bpu10I | CCTNAGC | 1 cut(s) | 717 |
| Bpu14I | TTCGAA | 1 cut(s) | 1404 |
| BpuEI | CTTGAG | 2 cut(s) | 935, 1258 |
| BpuMI | CCSGG | 3 cut(s) | 313, 406, 1746 |
| BsaAI | YACGTR | 2 cut(s) | 201, 445 |
| BsaJI | CCNNGG | 6 cut(s) | 682, 810, 1189, 1372, 1492, 1859 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 70, 100 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 201 |
| Bse3DI | GCAATG | 2 cut(s) | 329, 1611 |
| BseBI | CCWGG | 2 cut(s) | 853, 1860 |
| BseDI | CCNNGG | 6 cut(s) | 682, 810, 1189, 1372, 1492, 1859 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 201 |
| BseMI | GCAATG | 2 cut(s) | 329, 1611 |
| BseMII | CTCAG | 3 cut(s) | 267, 708, 1539 |
| BseXI | GCAGC | 1 cut(s) | 1987 |
| BsgI | GTGCAG | 3 cut(s) | 28, 624, 1885 |
| Bsh1236I | CGCG | 1 cut(s) | 219 |
| Bsh1285I | CGRYCG | 1 cut(s) | 54 |
| BshFI | GGCC | 1 cut(s) | 1123 |
| BsiEI | CGRYCG | 1 cut(s) | 54 |
| BsiHKCI | CYCGRG | 3 cut(s) | 624, 740, 1023 |
| BsiSI | CCGG | 3 cut(s) | 312, 405, 1746 |
| BslFI | GGGAC | 1 cut(s) | 1925 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 201 |
| BsmAI | GTCTC | 1 cut(s) | 1970 |
| BsmFI | GGGAC | 1 cut(s) | 1925 |
| BsmI | GAATGC | 2 cut(s) | 211, 676 |
| BsnI | GGCC | 1 cut(s) | 1123 |
| BsoBI | CYCGRG | 3 cut(s) | 624, 740, 1023 |
| Bsp119I | TTCGAA | 1 cut(s) | 1404 |
| Bsp1286I | GDGCHC | 2 cut(s) | 891, 1746 |
| Bsp143I | GATC | 7 cut(s) | 678, 1072, 1231, 1415, 1618, 1938, 1971 |
| Bsp19I | CCATGG | 1 cut(s) | 1372 |
| BspACI | CCGC | 8 cut(s) | 54, 219, 437, 745, 1034, 1223, 1359, 1811 |
| BspANI | GGCC | 1 cut(s) | 1123 |
| BspCNI | CTCAG | 3 cut(s) | 268, 709, 1540 |
| BspFNI | CGCG | 1 cut(s) | 219 |
| BspHI | TCATGA | 2 cut(s) | 132, 1327 |
| BspPI | GGATC | 2 cut(s) | 673, 1946 |
| BspT104I | TTCGAA | 1 cut(s) | 1404 |
| BsrBI | CCGCTC | 1 cut(s) | 745 |
| BsrDI | GCAATG | 2 cut(s) | 329, 1611 |
| BssECI | CCNNGG | 6 cut(s) | 682, 810, 1189, 1372, 1492, 1859 |
| BssMI | GATC | 7 cut(s) | 678, 1072, 1231, 1415, 1618, 1938, 1971 |
| BssT1I | CCWWGG | 5 cut(s) | 682, 810, 1189, 1372, 1492 |
| Bst2UI | CCWGG | 2 cut(s) | 853, 1860 |
| Bst4CI | ACNGT | 2 cut(s) | 196, 1216 |
| BstBAI | YACGTR | 2 cut(s) | 201, 445 |
| BstBI | TTCGAA | 1 cut(s) | 1404 |
| BstC8I | GCNNGC | 1 cut(s) | 644 |
| BstDEI | CTNAG | 4 cut(s) | 276, 487, 717, 1548 |
| BstDSI | CCRYGG | 1 cut(s) | 1372 |
| BstEII | GGTNACC | 1 cut(s) | 1261 |
| BstFNI | CGCG | 1 cut(s) | 219 |
| BstKTI | GATC | 7 cut(s) | 681, 1075, 1234, 1418, 1621, 1941, 1974 |
| BstMAI | GTCTC | 1 cut(s) | 1970 |
| BstMBI | GATC | 7 cut(s) | 678, 1072, 1231, 1415, 1618, 1938, 1971 |
| BstMCI | CGRYCG | 1 cut(s) | 54 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 671, 1043 |
| BstNI | CCWGG | 2 cut(s) | 853, 1860 |
| BstNSI | RCATGY | 5 cut(s) | 646, 1563, 1683, 1898, 2018 |
| BstPI | GGTNACC | 1 cut(s) | 1261 |
| BstSCI | CCNGG | 5 cut(s) | 311, 404, 851, 1744, 1858 |
| BstUI | CGCG | 1 cut(s) | 219 |
| BstV1I | GCAGC | 1 cut(s) | 1987 |
| BstX2I | RGATCY | 1 cut(s) | 1938 |
| BstXI | CCANNNNNNTGG | 3 cut(s) | 852, 1258, 1379 |
| BstYI | RGATCY | 1 cut(s) | 1938 |
| BsuRI | GGCC | 1 cut(s) | 1123 |
| BtgI | CCRYGG | 1 cut(s) | 1372 |
| BtrI | CACGTC | 1 cut(s) | 611 |
| BtsI | GCAGTG | 3 cut(s) | 997, 1234, 1251 |
| BtsIMutI | CAGTG | 3 cut(s) | 997, 1234, 1251 |
| Cac8I | GCNNGC | 1 cut(s) | 644 |
| CaiI | CAGNNNCTG | 1 cut(s) | 166 |
| CciI | TCATGA | 2 cut(s) | 132, 1327 |
| Cfr13I | GGNCC | 1 cut(s) | 1121 |
| Csp6I | GTAC | 2 cut(s) | 440, 1270 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 1036, 1071 |
| CviQI | GTAC | 2 cut(s) | 440, 1270 |
| DdeI | CTNAG | 4 cut(s) | 276, 487, 717, 1548 |
| DpnI | GATC | 7 cut(s) | 680, 1074, 1233, 1417, 1620, 1940, 1973 |
| DpnII | GATC | 7 cut(s) | 678, 1072, 1231, 1415, 1618, 1938, 1971 |
| DraI | TTTAAA | 1 cut(s) | 871 |
| Eco130I | CCWWGG | 5 cut(s) | 682, 810, 1189, 1372, 1492 |
| Eco24I | GRGCYC | 2 cut(s) | 891, 1746 |
| Eco72I | CACGTG | 2 cut(s) | 201, 445 |
| Eco88I | CYCGRG | 3 cut(s) | 624, 740, 1023 |
| Eco91I | GGTNACC | 1 cut(s) | 1261 |
| EcoO65I | GGTNACC | 1 cut(s) | 1261 |
| EcoRI | GAATTC | 4 cut(s) | 391, 508, 1307, 1345 |
| EcoRII | CCWGG | 2 cut(s) | 851, 1858 |
| EcoT14I | CCWWGG | 5 cut(s) | 682, 810, 1189, 1372, 1492 |
| EcoT38I | GRGCYC | 2 cut(s) | 891, 1746 |
| ErhI | CCWWGG | 5 cut(s) | 682, 810, 1189, 1372, 1492 |
| FaqI | GGGAC | 1 cut(s) | 1925 |
| FauI | CCCGC | 3 cut(s) | 738, 1216, 1804 |
| FauNDI | CATATG | 1 cut(s) | 1512 |
| FbaI | TGATCA | 1 cut(s) | 1231 |
| FblI | GTMKAC | 1 cut(s) | 1488 |
| Fnu4HI | GCNGC | 3 cut(s) | 220, 1035, 2001 |
| FriOI | GRGCYC | 2 cut(s) | 891, 1746 |
| Fsp4HI | GCNGC | 3 cut(s) | 220, 1035, 2001 |
| FspBI | CTAG | 3 cut(s) | 600, 894, 1149 |
| GluI | GCNGC | 3 cut(s) | 220, 1035, 2001 |
| GsuI | CTGGAG | 2 cut(s) | 72, 534 |
| HaeIII | GGCC | 1 cut(s) | 1123 |
| HapII | CCGG | 3 cut(s) | 312, 405, 1746 |
| HincII | GTYRAC | 1 cut(s) | 1882 |
| HindII | GTYRAC | 1 cut(s) | 1882 |
| HindIII | AAGCTT | 1 cut(s) | 1094 |
| HinfI | GANTC | 9 cut(s) | 27, 214, 755, 763, 1010, 1115, 1362, 1686, 1845 |
| HpaI | GTTAAC | 1 cut(s) | 1882 |
| HpaII | CCGG | 3 cut(s) | 312, 405, 1746 |
| HphI | GGTGA | 7 cut(s) | 22, 443, 784, 1091, 1361, 1394, 1721 |
| Hpy166II | GTNNAC | 4 cut(s) | 442, 1146, 1489, 1882 |
| Hpy188I | TCNGA | 2 cut(s) | 270, 1171 |
| Hpy8I | GTNNAC | 4 cut(s) | 442, 1146, 1489, 1882 |
| HpyAV | CCTTC | 3 cut(s) | 460, 1079, 1720 |
| HpyCH4III | ACNGT | 2 cut(s) | 196, 1216 |
| HpyCH4IV | ACGT | 4 cut(s) | 200, 444, 610, 1142 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 671, 1043 |
| HpyF3I | CTNAG | 4 cut(s) | 276, 487, 717, 1548 |
| HpySE526I | ACGT | 4 cut(s) | 200, 444, 610, 1142 |
| Ksp22I | TGATCA | 1 cut(s) | 1231 |
| KspAI | GTTAAC | 1 cut(s) | 1882 |
| Kzo9I | GATC | 7 cut(s) | 678, 1072, 1231, 1415, 1618, 1938, 1971 |
| LmnI | GCTCC | 2 cut(s) | 814, 1676 |
| Lsp1109I | GCAGC | 1 cut(s) | 1987 |
| LweI | GCATC | 8 cut(s) | 238, 309, 447, 796, 819, 1511, 1798, 2012 |
| MaeI | CTAG | 3 cut(s) | 600, 894, 1149 |
| MaeII | ACGT | 4 cut(s) | 200, 444, 610, 1142 |
| MaeIII | GTNAC | 3 cut(s) | 196, 382, 1261 |
| MalI | GATC | 7 cut(s) | 680, 1074, 1233, 1417, 1620, 1940, 1973 |
| MbiI | CCGCTC | 1 cut(s) | 745 |
| MboI | GATC | 7 cut(s) | 678, 1072, 1231, 1415, 1618, 1938, 1971 |
| MboII | GAAGA | 4 cut(s) | 164, 1094, 1809, 1817 |
| MfeI | CAATTG | 2 cut(s) | 711, 996 |
| MflI | RGATCY | 1 cut(s) | 1938 |
| MhlI | GDGCHC | 2 cut(s) | 891, 1746 |
| MlyI | GAGTC | 3 cut(s) | 21, 757, 1854 |
| MmeI | TCCRAC | 2 cut(s) | 248, 1850 |
| MroXI | GAANNNNTTC | 2 cut(s) | 167, 1097 |
| MseI | TTAA | 7 cut(s) | 255, 543, 801, 870, 1061, 1787, 1881 |
| MslI | CAYNNNNRTG | 5 cut(s) | 647, 827, 1106, 1377, 1695 |
| MspA1I | CMGCKG | 1 cut(s) | 1034 |
| MspI | CCGG | 3 cut(s) | 312, 405, 1746 |
| MspR9I | CCNGG | 5 cut(s) | 313, 406, 853, 1746, 1860 |
| MunI | CAATTG | 2 cut(s) | 711, 996 |
| Mva1269I | GAATGC | 2 cut(s) | 211, 676 |
| MvaI | CCWGG | 2 cut(s) | 853, 1860 |
| MvnI | CGCG | 1 cut(s) | 219 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 671, 1043 |
| NciI | CCSGG | 3 cut(s) | 313, 406, 1746 |
| NcoI | CCATGG | 1 cut(s) | 1372 |
| NdeI | CATATG | 1 cut(s) | 1512 |
| NdeII | GATC | 7 cut(s) | 678, 1072, 1231, 1415, 1618, 1938, 1971 |
| NmuCI | GTSAC | 2 cut(s) | 196, 382 |
| NspI | RCATGY | 5 cut(s) | 646, 1563, 1683, 1898, 2018 |
| NspV | TTCGAA | 1 cut(s) | 1404 |
| PaeI | GCATGC | 1 cut(s) | 646 |
| PaeR7I | CTCGAG | 1 cut(s) | 1023 |
| PagI | TCATGA | 2 cut(s) | 132, 1327 |
| PciI | ACATGT | 1 cut(s) | 1559 |
| PctI | GAATGC | 2 cut(s) | 211, 676 |
| PdmI | GAANNNNTTC | 2 cut(s) | 167, 1097 |
| PfeI | GAWTC | 6 cut(s) | 214, 755, 1010, 1115, 1362, 1686 |
| PkrI | GCNGC | 3 cut(s) | 221, 1036, 2002 |
| PleI | GAGTC | 3 cut(s) | 21, 757, 1853 |
| PmaCI | CACGTG | 2 cut(s) | 201, 445 |
| PmlI | CACGTG | 2 cut(s) | 201, 445 |
| PpsI | GAGTC | 3 cut(s) | 21, 757, 1853 |
| Ppu21I | YACGTR | 2 cut(s) | 201, 445 |
| PscI | ACATGT | 1 cut(s) | 1559 |
| PshBI | ATTAAT | 2 cut(s) | 255, 801 |
| Psp6I | CCWGG | 2 cut(s) | 851, 1858 |
| PspCI | CACGTG | 2 cut(s) | 201, 445 |
| PspEI | GGTNACC | 1 cut(s) | 1261 |
| PspGI | CCWGG | 2 cut(s) | 851, 1858 |
| PspPI | GGNCC | 1 cut(s) | 1121 |
| PstNI | CAGNNNCTG | 1 cut(s) | 166 |
| PsuI | RGATCY | 1 cut(s) | 1938 |
| RsaI | GTAC | 2 cut(s) | 441, 1271 |
| RsaNI | GTAC | 2 cut(s) | 440, 1270 |
| RseI | CAYNNNNRTG | 5 cut(s) | 647, 827, 1106, 1377, 1695 |
| SaqAI | TTAA | 7 cut(s) | 255, 543, 801, 870, 1061, 1787, 1881 |
| SatI | GCNGC | 3 cut(s) | 220, 1035, 2001 |
| Sau3AI | GATC | 7 cut(s) | 678, 1072, 1231, 1415, 1618, 1938, 1971 |
| Sau96I | GGNCC | 1 cut(s) | 1121 |
| SchI | GAGTC | 3 cut(s) | 21, 757, 1854 |
| ScrFI | CCNGG | 5 cut(s) | 313, 406, 853, 1746, 1860 |
| SduI | GDGCHC | 2 cut(s) | 891, 1746 |
| SfaNI | GCATC | 8 cut(s) | 238, 309, 447, 796, 819, 1511, 1798, 2012 |
| Sfr274I | CTCGAG | 1 cut(s) | 1023 |
| SfuI | TTCGAA | 1 cut(s) | 1404 |
| SlaI | CTCGAG | 1 cut(s) | 1023 |
| SmiMI | CAYNNNNRTG | 5 cut(s) | 647, 827, 1106, 1377, 1695 |
| SmlI | CTYRAG | 3 cut(s) | 914, 1023, 1273 |
| SmoI | CTYRAG | 3 cut(s) | 914, 1023, 1273 |
| SpeI | ACTAGT | 1 cut(s) | 1148 |
| SphI | GCATGC | 1 cut(s) | 646 |
| SsiI | CCGC | 8 cut(s) | 54, 219, 437, 745, 1034, 1223, 1359, 1811 |
| SspI | AATATT | 2 cut(s) | 556, 1053 |
| SspMI | CTAG | 3 cut(s) | 600, 894, 1149 |
| StyD4I | CCNGG | 5 cut(s) | 311, 404, 851, 1744, 1858 |
| StyI | CCWWGG | 5 cut(s) | 682, 810, 1189, 1372, 1492 |
| TaaI | ACNGT | 2 cut(s) | 196, 1216 |
| TaiI | ACGT | 4 cut(s) | 203, 447, 613, 1145 |
| TaqI | TCGA | 7 cut(s) | 10, 171, 559, 860, 1024, 1404, 1974 |
| TatI | WGTACW | 1 cut(s) | 1269 |
| TauI | GCSGC | 2 cut(s) | 222, 1037 |
| TfiI | GAWTC | 6 cut(s) | 214, 755, 1010, 1115, 1362, 1686 |
| Tru1I | TTAA | 7 cut(s) | 255, 543, 801, 870, 1061, 1787, 1881 |
| Tru9I | TTAA | 7 cut(s) | 255, 543, 801, 870, 1061, 1787, 1881 |
| TscAI | CASTG | 3 cut(s) | 997, 1241, 1251 |
| TseFI | GTSAC | 2 cut(s) | 196, 382 |
| TseI | GCWGC | 1 cut(s) | 2000 |
| Tsp45I | GTSAC | 2 cut(s) | 196, 382 |
| TspRI | CASTG | 3 cut(s) | 997, 1241, 1251 |
| VspI | ATTAAT | 2 cut(s) | 255, 801 |
| XapI | RAATTY | 6 cut(s) | 391, 508, 1307, 1345, 1644, 1928 |
| XceI | RCATGY | 5 cut(s) | 646, 1563, 1683, 1898, 2018 |
| XhoI | CTCGAG | 1 cut(s) | 1023 |
| XmiI | GTMKAC | 1 cut(s) | 1488 |
| XmnI | GAANNNNTTC | 2 cut(s) | 167, 1097 |
| XspI | CTAG | 3 cut(s) | 600, 894, 1149 |