Prupe.1G048700_v2.0.a1

Pentatricopeptide repeat-containing protein At4g02750-like

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
Physical Location & Seq
Reverse (-)
3428680 .. 3430710
2031 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G048700.1

Sequence Viewer

Length: 2031 bp
ATGCTCACTCGAAACCTCTCTCTACGACTCACCAGATTACTCTGCACGGCGACCGCAAAACCATTTATACAAAACCAAACTGCAACTCCAGACAACAATCTAAAGCCCCTCAACTCAAAAATATCAACTTTCATGAGGGATGGCTTTGTGGAAGAAGCCCAGAAGCTGTTCGACAAAATGCCTCGTAGAAACACCGTCACGTGGAATGCCATGATTCGCGGCTACTTTCTAAATGGGCAGTTCCAAGATGCGATTAATTTATTTAGTCGGATGACTGAGCGTGATGTTTTCTCGTATAACACCATGATTACCGGGTTGATGCAATGTGGGGATGTGGATGGTGCAAGGGAAGTCTTTGACAGGATGATTTATAGAGATGTTGTCACTTGGAATTCAATGGTTTCCGGGTATATTCGTAATGGGATGATTGGTGAAGCGGTACACGTGTTTGATGGGATGCCATTGAAGGATGTGATTTCATGGAACTTAGTGGTTGGGGGTCTTGTGAATTCTGGAGAGTTTGATTTGGCTGAAAAGTATTTTAAGCGAATGAATATTCGAGATTTGGCTTCTTGGACTATAATGATTTCAGGGTTTTCTAGTGCAGGACGTGTTGTTGAAGCCCGAGAACTCTTTGATGGCATGCTTGTGAGAGATGTTCAGGCTTGGAATGCTATGATCCTTGGGTATATAGAAAACGGGGATGTTGCAATTGCTGAGGGGTTGTTCCAGAAAATGCCCGAGCGGGATTTGGAATCTTGGACTCTAATGGTGAATGGGTTGGTCAAGGTTCAAAGAATTAATGATGCCTTGGAGCTTTTCATGGAGATGCCAGAGAAATGTCCAAAAACCTGGAACTCGATTATTTTTAAATTAGTAAGAAATGGGCTCACTAGAGAAGCTCATGCTTTTCTTGAGAAAAACCCTTACAAAGATGTTGTATCATGGACAAATATGATTGTTGGGTATTTGGGAATTGGAGAGGTTGGCAGTGCAATTGAACTCTTTGAATCAATGCTAACTCGAGATACAGCGGCATGGAACGCCACAATATTTGGATTAAGTGAAAATGATCTTGGTGAAGAAGGTTTGAAGCTTTTCATTAGAATGAAAGAATCAGGGCCATCCCCAGACAAAAATACGTTTACTAGTGTTTTGACAATCTGTTCAGACTTACCAACCTTACACCTTGGTAGGCAAACTCATGCACTCACAGTAAAAGCGGGATTTGATCACTGCGTTGCAGTGTCCAATGCTATGGTTACCATGTACTCAAGATGTGGGAATATGGATTTTGCTTTATTGGAATTCTCTTGCATGAAAAGTCATGATGTCATTTCTTGGAATTCTATAATCTGCGGATTCGCTCACCATGGGAATGGTGAAGTAGCTTTGGAGATGTTCGAACAAATGAGATCAACAGATGTTCAACCCAATCACATAACTTTTGTTGGTGTTCTGTCTGCTTGTAGCCATGCAGGGTTGGTAGACCAAGGCAGATACTACTTTCATATGATGAGATGCAAGTATTTCATTGAACCTACAACTGAGCATTATACATGTGTTGTTGATTTGTTGGGGAGATTTGGACTTATAGATGAGGCAATGAGTTTTTTAGATCAAATGAGAGCAGATGGATTTGAAATTCCTGCAAGTGTCTGGGGGGCATTACTTGGAGCATGTAGAATCCACAAGAATGTTGAGGTGGGTGAGATTGCAGGGGAGAAGGTTTTGGACATAGAGCCCGGTAATTCTGGTATATATTTGATTTTGGCAGAAATGTATTTAAGTATTGGAAGAAAAGAAGATGCGGGGAGGATTTGGACAAGAATGAAAGAGAAAGGAGTCAAGAAGCAACCTGGGTGCAGTTGGATTGAGGTTAACAACATTGGGCATGTATTTCTTTCAGGGGACAAATCCCACCCCAAATTTTGTAGGATCTATTCTGTATTAGAGATACTGCATACAGAGATCGAGACTGAAATTGCAAAATCAAATGCTGCATCATTTCAGCATGTAAAAGTTGCATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

677

Amino Acids

76.11

Weight (kDa)

5.85

Isoelectric Point (pI)

28.63

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccBSI CCGCTC 1 cut(s) 745
AccI GTMKAC 1 cut(s) 1488
AccII CGCG 1 cut(s) 219
AciI CCGC 8 cut(s) 54, 219, 437, 745, 1034, 1223, 1359, 1811
AclWI GGATC 2 cut(s) 673, 1946
AcsI RAATTY 6 cut(s) 391, 508, 1307, 1345, 1644, 1928
AcvI CACGTG 2 cut(s) 201, 445
AfaI GTAC 2 cut(s) 441, 1271
AfiI CCNNNNNNNGG 1 cut(s) 201
AflIII ACRYGT 4 cut(s) 442, 444, 610, 1559
AhlI ACTAGT 1 cut(s) 1148
AjiI CACGTC 1 cut(s) 611
AjnI CCWGG 2 cut(s) 851, 1858
AjuI GAANNNNNNNTTGG 2 cut(s) 1059, 1091
AluBI AGCT 5 cut(s) 166, 817, 902, 1096, 1391
AluI AGCT 5 cut(s) 166, 817, 902, 1096, 1391
Alw26I GTCTC 1 cut(s) 1970
AlwI GGATC 2 cut(s) 673, 1946
AlwNI CAGNNNCTG 1 cut(s) 166
Ama87I CYCGRG 3 cut(s) 624, 740, 1023
AoxI GGCC 1 cut(s) 1121
ApeKI GCWGC 1 cut(s) 2000
ApoI RAATTY 6 cut(s) 391, 508, 1307, 1345, 1644, 1928
AseI ATTAAT 2 cut(s) 255, 801
Asp700I GAANNNNTTC 2 cut(s) 167, 1097
AspS9I GGNCC 1 cut(s) 1121
AsuC2I CCSGG 3 cut(s) 313, 406, 1746
AsuHPI GGTGA 7 cut(s) 22, 443, 784, 1091, 1361, 1394, 1721
AsuII TTCGAA 1 cut(s) 1404
AvaI CYCGRG 3 cut(s) 624, 740, 1023
BaeI ACNNNNGTAYC 2 cut(s) 431, 464
BanII GRGCYC 2 cut(s) 891, 1746
BbrPI CACGTG 2 cut(s) 201, 445
BbvCI CCTCAGC 1 cut(s) 717
BbvI GCAGC 1 cut(s) 1987
BccI CCATC 6 cut(s) 134, 332, 446, 632, 1132, 1628
BceAI ACGGC 1 cut(s) 63
BciT130I CCWGG 2 cut(s) 853, 1860
BclI TGATCA 1 cut(s) 1231
BcnI CCSGG 3 cut(s) 313, 406, 1746
BcoDI GTCTC 1 cut(s) 1970
BcuI ACTAGT 1 cut(s) 1148
BfaI CTAG 3 cut(s) 600, 894, 1149
BisI GCNGC 3 cut(s) 220, 1035, 2001
BlsI GCNGC 3 cut(s) 221, 1036, 2002
Bme1390I CCNGG 5 cut(s) 313, 406, 853, 1746, 1860
BmeT110I CYCGRG 3 cut(s) 624, 740, 1023
BmgBI CACGTC 1 cut(s) 611
BmgT120I GGNCC 1 cut(s) 1121
BmrFI CCNGG 5 cut(s) 313, 406, 853, 1746, 1860
BmsI GCATC 8 cut(s) 238, 309, 447, 796, 819, 1511, 1798, 2012
BpmI CTGGAG 2 cut(s) 72, 534
Bpu10I CCTNAGC 1 cut(s) 717
Bpu14I TTCGAA 1 cut(s) 1404
BpuEI CTTGAG 2 cut(s) 935, 1258
BpuMI CCSGG 3 cut(s) 313, 406, 1746
BsaAI YACGTR 2 cut(s) 201, 445
BsaJI CCNNGG 6 cut(s) 682, 810, 1189, 1372, 1492, 1859
BsaXI ACNNNNNCTCC 2 cut(s) 70, 100
Bsc4I CCNNNNNNNGG 1 cut(s) 201
Bse3DI GCAATG 2 cut(s) 329, 1611
BseBI CCWGG 2 cut(s) 853, 1860
BseDI CCNNGG 6 cut(s) 682, 810, 1189, 1372, 1492, 1859
BseLI CCNNNNNNNGG 1 cut(s) 201
BseMI GCAATG 2 cut(s) 329, 1611
BseMII CTCAG 3 cut(s) 267, 708, 1539
BseXI GCAGC 1 cut(s) 1987
BsgI GTGCAG 3 cut(s) 28, 624, 1885
Bsh1236I CGCG 1 cut(s) 219
Bsh1285I CGRYCG 1 cut(s) 54
BshFI GGCC 1 cut(s) 1123
BsiEI CGRYCG 1 cut(s) 54
BsiHKCI CYCGRG 3 cut(s) 624, 740, 1023
BsiSI CCGG 3 cut(s) 312, 405, 1746
BslFI GGGAC 1 cut(s) 1925
BslI CCNNNNNNNGG 1 cut(s) 201
BsmAI GTCTC 1 cut(s) 1970
BsmFI GGGAC 1 cut(s) 1925
BsmI GAATGC 2 cut(s) 211, 676
BsnI GGCC 1 cut(s) 1123
BsoBI CYCGRG 3 cut(s) 624, 740, 1023
Bsp119I TTCGAA 1 cut(s) 1404
Bsp1286I GDGCHC 2 cut(s) 891, 1746
Bsp143I GATC 7 cut(s) 678, 1072, 1231, 1415, 1618, 1938, 1971
Bsp19I CCATGG 1 cut(s) 1372
BspACI CCGC 8 cut(s) 54, 219, 437, 745, 1034, 1223, 1359, 1811
BspANI GGCC 1 cut(s) 1123
BspCNI CTCAG 3 cut(s) 268, 709, 1540
BspFNI CGCG 1 cut(s) 219
BspHI TCATGA 2 cut(s) 132, 1327
BspPI GGATC 2 cut(s) 673, 1946
BspT104I TTCGAA 1 cut(s) 1404
BsrBI CCGCTC 1 cut(s) 745
BsrDI GCAATG 2 cut(s) 329, 1611
BssECI CCNNGG 6 cut(s) 682, 810, 1189, 1372, 1492, 1859
BssMI GATC 7 cut(s) 678, 1072, 1231, 1415, 1618, 1938, 1971
BssT1I CCWWGG 5 cut(s) 682, 810, 1189, 1372, 1492
Bst2UI CCWGG 2 cut(s) 853, 1860
Bst4CI ACNGT 2 cut(s) 196, 1216
BstBAI YACGTR 2 cut(s) 201, 445
BstBI TTCGAA 1 cut(s) 1404
BstC8I GCNNGC 1 cut(s) 644
BstDEI CTNAG 4 cut(s) 276, 487, 717, 1548
BstDSI CCRYGG 1 cut(s) 1372
BstEII GGTNACC 1 cut(s) 1261
BstFNI CGCG 1 cut(s) 219
BstKTI GATC 7 cut(s) 681, 1075, 1234, 1418, 1621, 1941, 1974
BstMAI GTCTC 1 cut(s) 1970
BstMBI GATC 7 cut(s) 678, 1072, 1231, 1415, 1618, 1938, 1971
BstMCI CGRYCG 1 cut(s) 54
BstMWI GCNNNNNNNGC 2 cut(s) 671, 1043
BstNI CCWGG 2 cut(s) 853, 1860
BstNSI RCATGY 5 cut(s) 646, 1563, 1683, 1898, 2018
BstPI GGTNACC 1 cut(s) 1261
BstSCI CCNGG 5 cut(s) 311, 404, 851, 1744, 1858
BstUI CGCG 1 cut(s) 219
BstV1I GCAGC 1 cut(s) 1987
BstX2I RGATCY 1 cut(s) 1938
BstXI CCANNNNNNTGG 3 cut(s) 852, 1258, 1379
BstYI RGATCY 1 cut(s) 1938
BsuRI GGCC 1 cut(s) 1123
BtgI CCRYGG 1 cut(s) 1372
BtrI CACGTC 1 cut(s) 611
BtsI GCAGTG 3 cut(s) 997, 1234, 1251
BtsIMutI CAGTG 3 cut(s) 997, 1234, 1251
Cac8I GCNNGC 1 cut(s) 644
CaiI CAGNNNCTG 1 cut(s) 166
CciI TCATGA 2 cut(s) 132, 1327
Cfr13I GGNCC 1 cut(s) 1121
Csp6I GTAC 2 cut(s) 440, 1270
CspCI CAANNNNNGTGG 2 cut(s) 1036, 1071
CviQI GTAC 2 cut(s) 440, 1270
DdeI CTNAG 4 cut(s) 276, 487, 717, 1548
DpnI GATC 7 cut(s) 680, 1074, 1233, 1417, 1620, 1940, 1973
DpnII GATC 7 cut(s) 678, 1072, 1231, 1415, 1618, 1938, 1971
DraI TTTAAA 1 cut(s) 871
Eco130I CCWWGG 5 cut(s) 682, 810, 1189, 1372, 1492
Eco24I GRGCYC 2 cut(s) 891, 1746
Eco72I CACGTG 2 cut(s) 201, 445
Eco88I CYCGRG 3 cut(s) 624, 740, 1023
Eco91I GGTNACC 1 cut(s) 1261
EcoO65I GGTNACC 1 cut(s) 1261
EcoRI GAATTC 4 cut(s) 391, 508, 1307, 1345
EcoRII CCWGG 2 cut(s) 851, 1858
EcoT14I CCWWGG 5 cut(s) 682, 810, 1189, 1372, 1492
EcoT38I GRGCYC 2 cut(s) 891, 1746
ErhI CCWWGG 5 cut(s) 682, 810, 1189, 1372, 1492
FaqI GGGAC 1 cut(s) 1925
FauI CCCGC 3 cut(s) 738, 1216, 1804
FauNDI CATATG 1 cut(s) 1512
FbaI TGATCA 1 cut(s) 1231
FblI GTMKAC 1 cut(s) 1488
Fnu4HI GCNGC 3 cut(s) 220, 1035, 2001
FriOI GRGCYC 2 cut(s) 891, 1746
Fsp4HI GCNGC 3 cut(s) 220, 1035, 2001
FspBI CTAG 3 cut(s) 600, 894, 1149
GluI GCNGC 3 cut(s) 220, 1035, 2001
GsuI CTGGAG 2 cut(s) 72, 534
HaeIII GGCC 1 cut(s) 1123
HapII CCGG 3 cut(s) 312, 405, 1746
HincII GTYRAC 1 cut(s) 1882
HindII GTYRAC 1 cut(s) 1882
HindIII AAGCTT 1 cut(s) 1094
HinfI GANTC 9 cut(s) 27, 214, 755, 763, 1010, 1115, 1362, 1686, 1845
HpaI GTTAAC 1 cut(s) 1882
HpaII CCGG 3 cut(s) 312, 405, 1746
HphI GGTGA 7 cut(s) 22, 443, 784, 1091, 1361, 1394, 1721
Hpy166II GTNNAC 4 cut(s) 442, 1146, 1489, 1882
Hpy188I TCNGA 2 cut(s) 270, 1171
Hpy8I GTNNAC 4 cut(s) 442, 1146, 1489, 1882
HpyAV CCTTC 3 cut(s) 460, 1079, 1720
HpyCH4III ACNGT 2 cut(s) 196, 1216
HpyCH4IV ACGT 4 cut(s) 200, 444, 610, 1142
HpyF10VI GCNNNNNNNGC 2 cut(s) 671, 1043
HpyF3I CTNAG 4 cut(s) 276, 487, 717, 1548
HpySE526I ACGT 4 cut(s) 200, 444, 610, 1142
Ksp22I TGATCA 1 cut(s) 1231
KspAI GTTAAC 1 cut(s) 1882
Kzo9I GATC 7 cut(s) 678, 1072, 1231, 1415, 1618, 1938, 1971
LmnI GCTCC 2 cut(s) 814, 1676
Lsp1109I GCAGC 1 cut(s) 1987
LweI GCATC 8 cut(s) 238, 309, 447, 796, 819, 1511, 1798, 2012
MaeI CTAG 3 cut(s) 600, 894, 1149
MaeII ACGT 4 cut(s) 200, 444, 610, 1142
MaeIII GTNAC 3 cut(s) 196, 382, 1261
MalI GATC 7 cut(s) 680, 1074, 1233, 1417, 1620, 1940, 1973
MbiI CCGCTC 1 cut(s) 745
MboI GATC 7 cut(s) 678, 1072, 1231, 1415, 1618, 1938, 1971
MboII GAAGA 4 cut(s) 164, 1094, 1809, 1817
MfeI CAATTG 2 cut(s) 711, 996
MflI RGATCY 1 cut(s) 1938
MhlI GDGCHC 2 cut(s) 891, 1746
MlyI GAGTC 3 cut(s) 21, 757, 1854
MmeI TCCRAC 2 cut(s) 248, 1850
MroXI GAANNNNTTC 2 cut(s) 167, 1097
MseI TTAA 7 cut(s) 255, 543, 801, 870, 1061, 1787, 1881
MslI CAYNNNNRTG 5 cut(s) 647, 827, 1106, 1377, 1695
MspA1I CMGCKG 1 cut(s) 1034
MspI CCGG 3 cut(s) 312, 405, 1746
MspR9I CCNGG 5 cut(s) 313, 406, 853, 1746, 1860
MunI CAATTG 2 cut(s) 711, 996
Mva1269I GAATGC 2 cut(s) 211, 676
MvaI CCWGG 2 cut(s) 853, 1860
MvnI CGCG 1 cut(s) 219
MwoI GCNNNNNNNGC 2 cut(s) 671, 1043
NciI CCSGG 3 cut(s) 313, 406, 1746
NcoI CCATGG 1 cut(s) 1372
NdeI CATATG 1 cut(s) 1512
NdeII GATC 7 cut(s) 678, 1072, 1231, 1415, 1618, 1938, 1971
NmuCI GTSAC 2 cut(s) 196, 382
NspI RCATGY 5 cut(s) 646, 1563, 1683, 1898, 2018
NspV TTCGAA 1 cut(s) 1404
PaeI GCATGC 1 cut(s) 646
PaeR7I CTCGAG 1 cut(s) 1023
PagI TCATGA 2 cut(s) 132, 1327
PciI ACATGT 1 cut(s) 1559
PctI GAATGC 2 cut(s) 211, 676
PdmI GAANNNNTTC 2 cut(s) 167, 1097
PfeI GAWTC 6 cut(s) 214, 755, 1010, 1115, 1362, 1686
PkrI GCNGC 3 cut(s) 221, 1036, 2002
PleI GAGTC 3 cut(s) 21, 757, 1853
PmaCI CACGTG 2 cut(s) 201, 445
PmlI CACGTG 2 cut(s) 201, 445
PpsI GAGTC 3 cut(s) 21, 757, 1853
Ppu21I YACGTR 2 cut(s) 201, 445
PscI ACATGT 1 cut(s) 1559
PshBI ATTAAT 2 cut(s) 255, 801
Psp6I CCWGG 2 cut(s) 851, 1858
PspCI CACGTG 2 cut(s) 201, 445
PspEI GGTNACC 1 cut(s) 1261
PspGI CCWGG 2 cut(s) 851, 1858
PspPI GGNCC 1 cut(s) 1121
PstNI CAGNNNCTG 1 cut(s) 166
PsuI RGATCY 1 cut(s) 1938
RsaI GTAC 2 cut(s) 441, 1271
RsaNI GTAC 2 cut(s) 440, 1270
RseI CAYNNNNRTG 5 cut(s) 647, 827, 1106, 1377, 1695
SaqAI TTAA 7 cut(s) 255, 543, 801, 870, 1061, 1787, 1881
SatI GCNGC 3 cut(s) 220, 1035, 2001
Sau3AI GATC 7 cut(s) 678, 1072, 1231, 1415, 1618, 1938, 1971
Sau96I GGNCC 1 cut(s) 1121
SchI GAGTC 3 cut(s) 21, 757, 1854
ScrFI CCNGG 5 cut(s) 313, 406, 853, 1746, 1860
SduI GDGCHC 2 cut(s) 891, 1746
SfaNI GCATC 8 cut(s) 238, 309, 447, 796, 819, 1511, 1798, 2012
Sfr274I CTCGAG 1 cut(s) 1023
SfuI TTCGAA 1 cut(s) 1404
SlaI CTCGAG 1 cut(s) 1023
SmiMI CAYNNNNRTG 5 cut(s) 647, 827, 1106, 1377, 1695
SmlI CTYRAG 3 cut(s) 914, 1023, 1273
SmoI CTYRAG 3 cut(s) 914, 1023, 1273
SpeI ACTAGT 1 cut(s) 1148
SphI GCATGC 1 cut(s) 646
SsiI CCGC 8 cut(s) 54, 219, 437, 745, 1034, 1223, 1359, 1811
SspI AATATT 2 cut(s) 556, 1053
SspMI CTAG 3 cut(s) 600, 894, 1149
StyD4I CCNGG 5 cut(s) 311, 404, 851, 1744, 1858
StyI CCWWGG 5 cut(s) 682, 810, 1189, 1372, 1492
TaaI ACNGT 2 cut(s) 196, 1216
TaiI ACGT 4 cut(s) 203, 447, 613, 1145
TaqI TCGA 7 cut(s) 10, 171, 559, 860, 1024, 1404, 1974
TatI WGTACW 1 cut(s) 1269
TauI GCSGC 2 cut(s) 222, 1037
TfiI GAWTC 6 cut(s) 214, 755, 1010, 1115, 1362, 1686
Tru1I TTAA 7 cut(s) 255, 543, 801, 870, 1061, 1787, 1881
Tru9I TTAA 7 cut(s) 255, 543, 801, 870, 1061, 1787, 1881
TscAI CASTG 3 cut(s) 997, 1241, 1251
TseFI GTSAC 2 cut(s) 196, 382
TseI GCWGC 1 cut(s) 2000
Tsp45I GTSAC 2 cut(s) 196, 382
TspRI CASTG 3 cut(s) 997, 1241, 1251
VspI ATTAAT 2 cut(s) 255, 801
XapI RAATTY 6 cut(s) 391, 508, 1307, 1345, 1644, 1928
XceI RCATGY 5 cut(s) 646, 1563, 1683, 1898, 2018
XhoI CTCGAG 1 cut(s) 1023
XmiI GTMKAC 1 cut(s) 1488
XmnI GAANNNNTTC 2 cut(s) 167, 1097
XspI CTAG 3 cut(s) 600, 894, 1149
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.