Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr4B

Orthogroup ID

OG0004747

Physical Location & Seq

Genomic Coordinates Forward (+)

8042671 .. 8045302

Gene Structure 2632 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh4BG044900.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 2193 bp

ATGACCTCCCTCCAAACCCTACTCAAAACCCTCTTCAAAAACCCCAGCACCATCAAAACCCCATCCCAGGCCAAACAGCTCCACGCCCAAATCCTCAAAACCAAACCCCCTTCACCTCCCGACCTCTCCTTCCTCGTCTCTCTTTACTCCAACCTCAACCTCCTACACCACACCCTCACTCTCTTCAACACTCTCCACTTCCCTCCCTCCACCATTGCCTGGAAGTCCATCATCAGATGCTACGCTTCCCATGGCCTCTGGCACCATTCCTTGGCCTCATTTGTGGAGATGAGGACTTTTGGCGTGTGCCCAGATCGCCATGTTTTCCCTTCTGTGCTCAAATCGTGCGCATCGGTTAGGGACTTGAGGTTAGGTGAGTCCGTTCATGGGTGCATTGTTCGGAGCGGTATGGAGTTTGATTTGTATACGTGTAATGCGCTCATGAATATGTACGCCAAGTTGGAGATTTTGGGTGCACACCAAGTGCTCGATGAAAGTCGCGACCGAAATCTAGAGGGTACTTTCGGGAGACATTTGGTTGGTTCTGTGGGACTTGACGGTGGTGGTGAGAGCATTGATAGATTGTTTAAGCAAAAGGAAGGCGAAAGAGTTATTGAAATGGACAGTGTGAGGAAGGTCTTCGACGTGATGCCAGAACGAGATATTGTGTCCTGGAATACAGTGATTGCAGGGGATGCGCAGAATGGGATGTATGAACAGGCTTTAGCGAGGGTCAGGGAGATGGGGAGTGCCAACTTGAAGCCTGATTCTTTTACTTTGTCTAGCGTGCTTCCGGTTTTTGCAGAATATGTAGATGTTGTTAAGGGAAAGGAGATCCATGCGTATGCCATAAGACATGGATTTGATGCAGATGTGTTCATTGGCAGTAGCTTGATCGACATGTATGCAAACTGTACTCGTATGGAGGACTCGCTAAAGGTGTTCAACCTGCTACGTCGGCGCGATTCCATTTCATGGAACTCGATTATTGGAGGGTGTGTGCAGAATGGTATGTTTGATGAAGGACTTGTGTTCTTTCGGTGTATGTTGACGGCTAAAACTAAGCCAACAGATGTCTCCTTTTCAAGTATCATTCCAGCTTGTGCCCACTTGACAACACTACATCTGGGGAAGCAGCTCCATGGATACATAATACGGGGCGGATTTGAGGATAATGTCTACATAGCAAGCTCACTAGTGGACATGTATGCAAAATGTGGTAACATTAAGATGGCGAGGTGGATTTTTGACAAAATGGAGCAACATGATATGGTGTCATGGACAGCCATGACTATGGGATATGCATTGCATGGTCATGCCCATGACGCCATTTCCTTGTTTGAGAAGATGAAAGGAGAGGCAGTAAAGCCTACTTATGTTGCTTTCATGGCTGTATTGACTGCGTGTAGCCATGCTGGATTGGTAGACGAAGCTTGGAAGTATTATAATAGTATGACCAAAAAATATAGGATTGCTCCAGGTATAGAGCACTATGCTGCTGTTGCAGACCTTCTTGGTCGAGCTGGAAGGTTGGACGAAGCTTATCGCTTTATCTCTAGCATGCATATAGAACCAACAGGAAGTGTATGGTCAACATTGTTGGCTGCTTGTAGAGTTCACAAGAATGTTGAATTGGCTGAAAAGGTTGCTGAAAAAATATTTGCTGTTGATCCCGAGAACGTTGGAGCTTATGTGCTACTGTCAAACATATATTCTGCTGCTAAGAAATGGAAAGAAGCGGCAGAAATGAGAGTCTCGATGAGAGATAAGGGCATGAAAAAAAAGCCAGCCTGCAGCTGGATTGAAGTTAAAAACAAGGTTCATGCTTTTGTAGCGGGAGATGAATCCCACCCATATTATGATGAGATAACCAAGGCTCTGGAAGTTCTCTTGGAGCAGATGGAGCGAGAAGGGTATGTGCCGAACACAAATGAGGTGCTCCAAGATGTTGAAGAGGAGCAAAAGAAGTACCTGTTGTGTCACCACAGTGAGAGGCTTGCCATAGCATTTGGCATCATTAGCACTCCTGCTGGGACAACAATTCGAGTAACAAAGAACCTTCGGGTATGTGTGGATTGCCACACAGCAACGAAACTTATATCCAAGATAGTCGGAAGAGAGATAATTGTCAGAGATAATAGCCGGTTTCACCATTTCAGGGGTGGGGAGTGTTCATGTCGAGACTATTGGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0003676 GO:0003723 GO:0003824 GO:0004518 GO:0004519 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0006139 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0009451 GO:0009987 GO:0016070 GO:0016787 GO:0016788 GO:0034641 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043412 GO:0044237 GO:0044238 GO:0044424 GO:0044464 GO:0046483 GO:0071704 GO:0090304 GO:0090305 GO:0097159 GO:1901360 GO:1901363

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DYW_deaminase PPR PPR_2

Protein Analysis

730

Amino Acids

82.05

Weight (kDa)

8.01

Isoelectric Point (pI)

39.88

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
PPR_2	PF13041	220 - 266	5.1e-08	PPR repeat family
PPR_2	PF13041	322 - 370	7.6e-08	PPR repeat family
E_motif	PF20431	540 - 602	3.5e-20	E motif
DYW_deaminase	PF14432	638 - 730	2.7e-43	DYW family of nucleic acid deaminases

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0004747)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23330 AT3G23330
fragaria_vesca	FvH4_4g03820 FvH4_4g04640
malus_domestica	MD13G1215400.v1.1 MD15G1316700.v1.1 MD16G1226500.v1.1
prunus_persica	Prupe.1G040600_v2.0.a1 Prupe.1G048700_v2.0.a1
pyrus_communis	pycom13g18860
rosa_chinensis	RchiOBHm_Chr4g0393661 RchiOBHm_Chr4g0395421
rosa_laevigata	RLG00000009623 RLG00000009737
rosa_multiflora	Rmu_sc0004598.1_g000006 Rmu_sc0010124.1_g000005 Rmu_sc0010817.1_g000005
rosa_roxburghii	Rroxscaffold_5G00338850 Rroxscaffold_5G00340380
rosa_rugosa	Rorug03G0357200 Rorug03G0371800.1
rosa_samantha	Rh4AG048500 Rh4AG059800 Rh4BG044900 Rh4BG058400 Rh4CG052000 Rh4CG064100
rosa_wichuraiana	Rw0G003320 Rw0G022520 Rw4G003850 Rw4G004790

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1446
Acc16I	TGCGCA	2 cut(s)	349, 699
Acc36I	ACCTGC	1 cut(s)	957
AccB1I	GGYRCC	1 cut(s)	261
AccB7I	CCANNNNNTGG	3 cut(s)	219, 271, 975
AccBSI	CCGCTC	1 cut(s)	405
AccI	GTMKAC	3 cut(s)	425, 1179, 1425
AccII	CGCG	2 cut(s)	501, 963
AciI	CCGC	4 cut(s)	405, 1161, 1739, 1835
AclI	AACGTT	1 cut(s)	1680
AclWI	GGATC	2 cut(s)	829, 1664
AcyI	GRCGYC	1 cut(s)	1326
AdeI	CACNNNGTG	1 cut(s)	484
AfaI	GTAC	4 cut(s)	452, 520, 916, 1970
AfiI	CCNNNNNNNGG	7 cut(s)	67, 219, 271, 387, 975, 1797, 2158
AflIII	ACRYGT	3 cut(s)	428, 900, 1203
AgsI	TTSAA	9 cut(s)	37, 187, 617, 760, 946, 1086, 1631, 1805, 1952
AhlI	ACTAGT	1 cut(s)	1195
AjiI	CACGTC	1 cut(s)	646
AjnI	CCWGG	4 cut(s)	66, 218, 671, 1477
AjuI	GAANNNNNNNTTGG	2 cut(s)	1616, 1648
AleI	CACNNNNGTG	1 cut(s)	1986
Alw21I	GWGCWC	5 cut(s)	339, 478, 489, 1491, 1941
Alw26I	GTCTC	5 cut(s)	142, 523, 1081, 1759, 2175
Alw44I	GTGCAC	1 cut(s)	474
AlwI	GGATC	2 cut(s)	829, 1664
Ama87I	CYCGRG	1 cut(s)	1673
AoxI	GGCC	3 cut(s)	69, 253, 273
ApaLI	GTGCAC	1 cut(s)	474
ApeKI	GCWGC	5 cut(s)	1135, 1496, 1604, 1718, 1794
Asp700I	GAANNNNTTC	1 cut(s)	638
AspLEI	GCGC	4 cut(s)	350, 439, 700, 963
AsuHPI	GGTGA	5 cut(s)	105, 386, 578, 1973, 2141
AvaI	CYCGRG	1 cut(s)	1673
BaeGI	GKGCMC	3 cut(s)	311, 478, 1108
BanI	GGYRCC	1 cut(s)	261
BbsI	GAAGAC	1 cut(s)	631
Bbv12I	GWGCWC	5 cut(s)	339, 478, 489, 1491, 1941
BbvI	GCAGC	5 cut(s)	1147, 1483, 1591, 1705, 1806
BccI	CCATC	6 cut(s)	59, 70, 236, 736, 1225, 1894
BceAI	ACGGC	1 cut(s)	1068
BcgI	CGANNNNNNTGC	2 cut(s)	887, 921
BciT130I	CCWGG	4 cut(s)	68, 220, 673, 1479
BciVI	GTATCC	1 cut(s)	1139
BcoDI	GTCTC	5 cut(s)	142, 523, 1081, 1759, 2175
BcuI	ACTAGT	1 cut(s)	1195
BfaI	CTAG	4 cut(s)	512, 783, 1196, 1557
BfmI	CTRYAG	1 cut(s)	1792
BfuAI	ACCTGC	1 cut(s)	957
BfuI	GTATCC	1 cut(s)	1139
BisI	GCNGC	6 cut(s)	1136, 1497, 1605, 1719, 1740, 1795
BlsI	GCNGC	6 cut(s)	1137, 1498, 1606, 1720, 1741, 1796
Bme1390I	CCNGG	4 cut(s)	68, 220, 673, 1479
BmeT110I	CYCGRG	1 cut(s)	1673
BmgBI	CACGTC	1 cut(s)	646
BmiI	GGNNCC	1 cut(s)	263
BmrFI	CCNGG	4 cut(s)	68, 220, 673, 1479
BmsI	GCATC	6 cut(s)	227, 359, 639, 685, 856, 2022
BpiI	GAAGAC	1 cut(s)	631
BpmI	CTGGAG	1 cut(s)	1461
BpuEI	CTTGAG	1 cut(s)	385
BsaAI	YACGTR	1 cut(s)	429
BsaHI	GRCGYC	1 cut(s)	1326
BsaJI	CCNNGG	5 cut(s)	66, 250, 270, 1141, 1872
BsaWI	WCCGGW	1 cut(s)	793
BsaXI	ACNNNNNCTCC	6 cut(s)	984, 1014, 1347, 1377, 1677, 1707
Bsc4I	CCNNNNNNNGG	7 cut(s)	67, 219, 271, 387, 975, 1797, 2158
Bse118I	RCCGGY	1 cut(s)	2142
Bse3DI	GCAATG	2 cut(s)	213, 1304
BseBI	CCWGG	4 cut(s)	68, 220, 673, 1479
BseDI	CCNNGG	5 cut(s)	66, 250, 270, 1141, 1872
BseGI	GGATG	3 cut(s)	62, 700, 714
BseLI	CCNNNNNNNGG	7 cut(s)	67, 219, 271, 387, 975, 1797, 2158
BseMI	GCAATG	2 cut(s)	213, 1304
BseRI	GAGGAG	1 cut(s)	1970
BseSI	GKGCMC	3 cut(s)	311, 478, 1108
BseXI	GCAGC	5 cut(s)	1147, 1483, 1591, 1705, 1806
BseYI	CCCAGC	2 cut(s)	44, 2030
BsgI	GTGCAG	1 cut(s)	1022
Bsh1236I	CGCG	2 cut(s)	501, 963
Bsh1285I	CGRYCG	1 cut(s)	505
BshFI	GGCC	3 cut(s)	71, 255, 275
BshNI	GGYRCC	1 cut(s)	261
BsiEI	CGRYCG	1 cut(s)	505
BsiHKAI	GWGCWC	5 cut(s)	339, 478, 489, 1491, 1941
BsiHKCI	CYCGRG	1 cut(s)	1673
BsiSI	CCGG	2 cut(s)	794, 2143
BslFI	GGGAC	3 cut(s)	374, 564, 2047
BslI	CCNNNNNNNGG	7 cut(s)	67, 219, 271, 387, 975, 1797, 2158
BsmAI	GTCTC	5 cut(s)	142, 523, 1081, 1759, 2175
BsmBI	CGTCTC	1 cut(s)	142
BsmFI	GGGAC	3 cut(s)	374, 564, 2047
BsnI	GGCC	3 cut(s)	71, 255, 275
BsoBI	CYCGRG	1 cut(s)	1673
Bsp1286I	GDGCHC	7 cut(s)	311, 339, 478, 489, 1108, 1491, 1941
Bsp143I	GATC	4 cut(s)	313, 834, 894, 1669
Bsp19I	CCATGG	2 cut(s)	250, 1141
Bsp68I	TCGCGA	1 cut(s)	501
BspACI	CCGC	4 cut(s)	405, 1161, 1739, 1835
BspANI	GGCC	3 cut(s)	71, 255, 275
BspFNI	CGCG	2 cut(s)	501, 963
BspHI	TCATGA	1 cut(s)	441
BspLI	GGNNCC	1 cut(s)	263
BspMAI	CTGCAG	1 cut(s)	1796
BspMI	ACCTGC	1 cut(s)	957
BspPI	GGATC	2 cut(s)	829, 1664
BspT107I	GGYRCC	1 cut(s)	261
BsrBI	CCGCTC	1 cut(s)	405
BsrDI	GCAATG	2 cut(s)	213, 1304
BsrFI	RCCGGY	1 cut(s)	2142
BssAI	RCCGGY	1 cut(s)	2142
BssECI	CCNNGG	5 cut(s)	66, 250, 270, 1141, 1872
BssMI	GATC	4 cut(s)	313, 834, 894, 1669
BssNAI	GTATAC	1 cut(s)	426
BssNI	GRCGYC	1 cut(s)	1326
BssT1I	CCWWGG	4 cut(s)	250, 270, 1141, 1872
Bst1107I	GTATAC	1 cut(s)	426
Bst2UI	CCWGG	4 cut(s)	68, 220, 673, 1479
Bst4CI	ACNGT	6 cut(s)	560, 626, 682, 914, 1701, 1988
Bst6I	CTCTTC	4 cut(s)	38, 188, 1947, 2110
BstACI	GRCGYC	1 cut(s)	1326
BstAPI	GCANNNNNTGC	1 cut(s)	695
BstBAI	YACGTR	1 cut(s)	429
BstC8I	GCNNGC	6 cut(s)	788, 1189, 1562, 1788, 1792, 1998
BstDEI	CTNAG	2 cut(s)	1062, 1722
BstDSI	CCRYGG	2 cut(s)	250, 1141
BstF5I	GGATG	3 cut(s)	62, 700, 714
BstFNI	CGCG	2 cut(s)	501, 963
BstHHI	GCGC	4 cut(s)	350, 439, 700, 963
BstKTI	GATC	4 cut(s)	316, 837, 897, 1672
BstMAI	GTCTC	5 cut(s)	142, 523, 1081, 1759, 2175
BstMBI	GATC	4 cut(s)	313, 834, 894, 1669
BstMCI	CGRYCG	1 cut(s)	505
BstMWI	GCNNNNNNNGC	9 cut(s)	315, 695, 958, 1325, 1388, 1502, 1832, 1903, 2019
BstNI	CCWGG	4 cut(s)	68, 220, 673, 1479
BstNSI	RCATGY	3 cut(s)	904, 1207, 1564
BstSCI	CCNGG	4 cut(s)	66, 218, 671, 1477
BstSFI	CTRYAG	1 cut(s)	1792
BstSLI	GKGCMC	3 cut(s)	311, 478, 1108
BstUI	CGCG	2 cut(s)	501, 963
BstV1I	GCAGC	5 cut(s)	1147, 1483, 1591, 1705, 1806
BstV2I	GAAGAC	1 cut(s)	631
BstX2I	RGATCY	1 cut(s)	834
BstXI	CCANNNNNNTGG	2 cut(s)	1294, 1879
BstYI	RGATCY	1 cut(s)	834
BstZ17I	GTATAC	1 cut(s)	426
BsuI	GTATCC	1 cut(s)	1139
BsuRI	GGCC	3 cut(s)	71, 255, 275
BtgI	CCRYGG	2 cut(s)	250, 1141
BtrI	CACGTC	1 cut(s)	646
BtsCI	GGATG	3 cut(s)	62, 700, 714
BtsIMutI	CAGTG	3 cut(s)	631, 687, 1993
BtuMI	TCGCGA	1 cut(s)	501
BveI	ACCTGC	1 cut(s)	957
Cac8I	GCNNGC	6 cut(s)	788, 1189, 1562, 1788, 1792, 1998
CciI	TCATGA	1 cut(s)	441
CfoI	GCGC	4 cut(s)	350, 439, 700, 963
Cfr10I	RCCGGY	1 cut(s)	2142
CseI	GACGC	1 cut(s)	1334
Csp6I	GTAC	4 cut(s)	451, 519, 915, 1969
CviQI	GTAC	4 cut(s)	451, 519, 915, 1969
DdeI	CTNAG	2 cut(s)	1062, 1722
DpnI	GATC	4 cut(s)	315, 836, 896, 1671
DpnII	GATC	4 cut(s)	313, 834, 894, 1669
DraIII	CACNNNGTG	1 cut(s)	484
Eam1104I	CTCTTC	4 cut(s)	38, 188, 1947, 2110
EarI	CTCTTC	4 cut(s)	38, 188, 1947, 2110
EciI	GGCGGA	1 cut(s)	1176
Eco130I	CCWWGG	4 cut(s)	250, 270, 1141, 1872
Eco88I	CYCGRG	1 cut(s)	1673
EcoRII	CCWGG	4 cut(s)	66, 218, 671, 1477
EcoT14I	CCWWGG	4 cut(s)	250, 270, 1141, 1872
EcoT22I	ATGCAT	2 cut(s)	1306, 1566
ErhI	CCWWGG	4 cut(s)	250, 270, 1141, 1872
Esp3I	CGTCTC	1 cut(s)	142
FaqI	GGGAC	3 cut(s)	374, 564, 2047
FauI	CCCGC	1 cut(s)	1828
FblI	GTMKAC	3 cut(s)	425, 1179, 1425
Fnu4HI	GCNGC	6 cut(s)	1136, 1497, 1605, 1719, 1740, 1795
FokI	GGATG	3 cut(s)	49, 707, 721
Fsp4HI	GCNGC	6 cut(s)	1136, 1497, 1605, 1719, 1740, 1795
FspAI	RTGCGCAY	1 cut(s)	349
FspBI	CTAG	4 cut(s)	512, 783, 1196, 1557
FspI	TGCGCA	2 cut(s)	349, 699
GlaI	GCGC	4 cut(s)	349, 438, 699, 962
GluI	GCNGC	6 cut(s)	1136, 1497, 1605, 1719, 1740, 1795
GsaI	CCCAGC	2 cut(s)	48, 2034
GsuI	CTGGAG	1 cut(s)	1461
HaeIII	GGCC	3 cut(s)	71, 255, 275
HapII	CCGG	2 cut(s)	794, 2143
HgaI	GACGC	1 cut(s)	1334
HhaI	GCGC	4 cut(s)	350, 439, 700, 963
Hin1I	GRCGYC	1 cut(s)	1326
Hin6I	GCGC	4 cut(s)	348, 437, 698, 961
HinP1I	GCGC	4 cut(s)	348, 437, 698, 961
HincII	GTYRAC	2 cut(s)	1050, 1593
HindII	GTYRAC	2 cut(s)	1050, 1593
HindIII	AAGCTT	2 cut(s)	1431, 1539
HinfI	GANTC	6 cut(s)	377, 767, 929, 965, 1752, 1844
HpaII	CCGG	2 cut(s)	794, 2143
HphI	GGTGA	5 cut(s)	105, 386, 578, 1973, 2141
Hpy166II	GTNNAC	8 cut(s)	426, 476, 1050, 1180, 1201, 1426, 1593, 1618
Hpy188I	TCNGA	4 cut(s)	236, 402, 2114, 2132
Hpy188III	TCNNGA	9 cut(s)	119, 442, 500, 512, 526, 1673, 1756, 1880, 2180
Hpy8I	GTNNAC	8 cut(s)	426, 476, 1050, 1180, 1201, 1426, 1593, 1618
Hpy99I	CGWCG	2 cut(s)	647, 960
HpyCH4III	ACNGT	6 cut(s)	560, 626, 682, 914, 1701, 1988
HpyCH4IV	ACGT	4 cut(s)	428, 645, 955, 1680
HpyF10VI	GCNNNNNNNGC	9 cut(s)	315, 695, 958, 1325, 1388, 1502, 1832, 1903, 2019
HpyF3I	CTNAG	2 cut(s)	1062, 1722
HpySE526I	ACGT	4 cut(s)	428, 645, 955, 1680
Hsp92I	GRCGYC	1 cut(s)	1326
HspAI	GCGC	4 cut(s)	348, 437, 698, 961
Kzo9I	GATC	4 cut(s)	313, 834, 894, 1669
Lsp1109I	GCAGC	5 cut(s)	1147, 1483, 1591, 1705, 1806
LweI	GCATC	6 cut(s)	227, 359, 639, 685, 856, 2022
MaeI	CTAG	4 cut(s)	512, 783, 1196, 1557
MaeII	ACGT	4 cut(s)	428, 645, 955, 1680
MaeIII	GTNAC	3 cut(s)	1220, 1979, 2047
MalI	GATC	4 cut(s)	315, 836, 896, 1671
MbiI	CCGCTC	1 cut(s)	405
MboI	GATC	4 cut(s)	313, 834, 894, 1669
MboII	GAAGA	6 cut(s)	25, 175, 631, 1357, 1964, 2127
MflI	RGATCY	1 cut(s)	834
MhlI	GDGCHC	7 cut(s)	311, 339, 478, 489, 1108, 1491, 1941
MluCI	AATT	3 cut(s)	1631, 2040, 2124
MlyI	GAGTC	3 cut(s)	386, 923, 1761
MmeI	TCCRAC	5 cut(s)	174, 441, 1512, 1663, 2092
Mph1103I	ATGCAT	2 cut(s)	1306, 1566
MroXI	GAANNNNTTC	1 cut(s)	638
MseI	TTAA	4 cut(s)	588, 822, 1227, 1809
MslI	CAYNNNNRTG	8 cut(s)	446, 843, 1229, 1292, 1314, 1320, 1623, 1986
MspA1I	CMGCKG	1 cut(s)	1797
MspI	CCGG	2 cut(s)	794, 2143
MspR9I	CCNGG	4 cut(s)	68, 220, 673, 1479
MvaI	CCWGG	4 cut(s)	68, 220, 673, 1479
MvnI	CGCG	2 cut(s)	501, 963
MwoI	GCNNNNNNNGC	9 cut(s)	315, 695, 958, 1325, 1388, 1502, 1832, 1903, 2019
NcoI	CCATGG	2 cut(s)	250, 1141
NdeII	GATC	4 cut(s)	313, 834, 894, 1669
NlaIV	GGNNCC	1 cut(s)	263
NmuCI	GTSAC	1 cut(s)	1979
NruI	TCGCGA	1 cut(s)	501
NsbI	TGCGCA	2 cut(s)	349, 699
NsiI	ATGCAT	2 cut(s)	1306, 1566
NspI	RCATGY	3 cut(s)	904, 1207, 1564
OliI	CACNNNNGTG	1 cut(s)	1986
PaeI	GCATGC	1 cut(s)	1564
PagI	TCATGA	1 cut(s)	441
PciI	ACATGT	2 cut(s)	900, 1203
PdmI	GAANNNNTTC	1 cut(s)	638
PfeI	GAWTC	3 cut(s)	767, 965, 1844
PflMI	CCANNNNNTGG	3 cut(s)	219, 271, 975
PfoI	TCCNGGA	1 cut(s)	671
PkrI	GCNGC	6 cut(s)	1137, 1498, 1606, 1720, 1741, 1796
PleI	GAGTC	3 cut(s)	385, 923, 1760
PpsI	GAGTC	3 cut(s)	385, 923, 1760
Ppu21I	YACGTR	1 cut(s)	429
PscI	ACATGT	2 cut(s)	900, 1203
PsiI	TTATAA	1 cut(s)	1446
Psp1406I	AACGTT	1 cut(s)	1680
Psp6I	CCWGG	4 cut(s)	66, 218, 671, 1477
PspFI	CCCAGC	2 cut(s)	44, 2030
PspGI	CCWGG	4 cut(s)	66, 218, 671, 1477
PspN4I	GGNNCC	1 cut(s)	263
PstI	CTGCAG	1 cut(s)	1796
PsuI	RGATCY	1 cut(s)	834
PvuII	CAGCTG	1 cut(s)	1797
RruI	TCGCGA	1 cut(s)	501
RsaI	GTAC	4 cut(s)	452, 520, 916, 1970
RsaNI	GTAC	4 cut(s)	451, 519, 915, 1969
RseI	CAYNNNNRTG	8 cut(s)	446, 843, 1229, 1292, 1314, 1320, 1623, 1986
SaqAI	TTAA	4 cut(s)	588, 822, 1227, 1809
SatI	GCNGC	6 cut(s)	1136, 1497, 1605, 1719, 1740, 1795
Sau3AI	GATC	4 cut(s)	313, 834, 894, 1669
SchI	GAGTC	3 cut(s)	386, 923, 1761
ScrFI	CCNGG	4 cut(s)	68, 220, 673, 1479
SduI	GDGCHC	7 cut(s)	311, 339, 478, 489, 1108, 1491, 1941
SfaNI	GCATC	6 cut(s)	227, 359, 639, 685, 856, 2022
SfcI	CTRYAG	1 cut(s)	1792
SmiMI	CAYNNNNRTG	8 cut(s)	446, 843, 1229, 1292, 1314, 1320, 1623, 1986
SmlI	CTYRAG	1 cut(s)	364
SmoI	CTYRAG	1 cut(s)	364
SpeI	ACTAGT	1 cut(s)	1195
SphI	GCATGC	1 cut(s)	1564
Sse9I	AATT	3 cut(s)	1631, 2040, 2124
SsiI	CCGC	4 cut(s)	405, 1161, 1739, 1835
SspI	AATATT	1 cut(s)	1659
SspMI	CTAG	4 cut(s)	512, 783, 1196, 1557
StyD4I	CCNGG	4 cut(s)	66, 218, 671, 1477
StyI	CCWWGG	4 cut(s)	250, 270, 1141, 1872
TaaI	ACNGT	6 cut(s)	560, 626, 682, 914, 1701, 1988
TaiI	ACGT	4 cut(s)	431, 648, 958, 1683
TaqI	TCGA	8 cut(s)	489, 642, 897, 983, 1519, 1757, 2044, 2179
TaqII	GACCGA	1 cut(s)	519
TasI	AATT	3 cut(s)	1631, 2040, 2124
TatI	WGTACW	1 cut(s)	914
TauI	GCSGC	1 cut(s)	1742
TfiI	GAWTC	3 cut(s)	767, 965, 1844
Tru1I	TTAA	4 cut(s)	588, 822, 1227, 1809
Tru9I	TTAA	4 cut(s)	588, 822, 1227, 1809
TscAI	CASTG	3 cut(s)	631, 687, 1993
TseFI	GTSAC	1 cut(s)	1979
TseI	GCWGC	5 cut(s)	1135, 1496, 1604, 1718, 1794
Tsp45I	GTSAC	1 cut(s)	1979
TspGWI	ACGGA	1 cut(s)	370
TspRI	CASTG	3 cut(s)	631, 687, 1993
Van91I	CCANNNNNTGG	3 cut(s)	219, 271, 975
VneI	GTGCAC	1 cut(s)	474
XbaI	TCTAGA	1 cut(s)	511
XceI	RCATGY	3 cut(s)	904, 1207, 1564
XcmI	CCANNNNNNNNNTGG	2 cut(s)	1794, 2159
XmiI	GTMKAC	3 cut(s)	425, 1179, 1425
XmnI	GAANNNNTTC	1 cut(s)	638
XspI	CTAG	4 cut(s)	512, 783, 1196, 1557
Zsp2I	ATGCAT	2 cut(s)	1306, 1566

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.