Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0014259

Physical Location & Seq

Genomic Coordinates Forward (+)

8586359 .. 8587271

Gene Structure 913 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

AT3G23805.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

ATGTCTAGATCCTTAGCTCTCGTTTACTTATCCTTACTTTGTCTTCAAACCCATCTCTCAATCTCCGTCACAGTTCCGATTCCGTCGGTAAACGGCGAAATCGACGCAATGCTGAACCGGAACGGCGTAATCGGAGAGGAAGAAGGAGAGGAGATGATGCCATCGGAGATAAGTCGGAGAGTAATGATGATGCGGAAACAGTACATAAGCTACGAAACTTTAAGGAGAGATATGGTTCCTTGTCAGAAACCAGGTGCTTCTTATTACGCTTGTCGCTCTGGTCAGGCTAATGCTTACAACAGAGGATGTAGTGTCATTACTAGGTGTGCTAGAGACACTAACGACATCAAGACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005911 GO:0007154 GO:0007165 GO:0007267 GO:0008150 GO:0009506 GO:0009966 GO:0009987 GO:0010469 GO:0010646 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030054 GO:0030545 GO:0035556 GO:0048018 GO:0048046 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RALF

Protein Analysis

118

Amino Acids

13.24

Weight (kDa)

8.32

Isoelectric Point (pI)

58.01

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RALF	PF05498	50 - 111	1.5e-27	Rapid ALkalinization Factor (RALF)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Image

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Orthologous Genes (Group: OG0014259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23805 AT4G13950
fragaria_vesca	FvH4_4g13250
malus_domestica	MD04G1017300.v1.1 MD13G1281800.v1.1
prunus_persica	Prupe.1G165400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0413501
rosa_laevigata	RLG00000008215
rosa_multiflora	Rmu_sc0000883.1_g000006
rosa_roxburghii	Rroxscaffold_5G00357400
rosa_rugosa	Rorug04G0120700
rosa_samantha	Rh4AG180400 Rh4BG179700 Rh4CG191500 Rh4DG175700
rosa_wichuraiana	Rw4G015030 Rw4G015080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AciI	CCGC	1 cut(s)	193
AclWI	GGATC	1 cut(s)	3
AfaI	GTAC	1 cut(s)	203
AgsI	TTSAA	1 cut(s)	47
AjnI	CCWGG	1 cut(s)	250
AluBI	AGCT	2 cut(s)	17, 210
AluI	AGCT	2 cut(s)	17, 210
Alw26I	GTCTC	1 cut(s)	327
AlwI	GGATC	1 cut(s)	3
BbsI	GAAGAC	1 cut(s)	35
BccI	CCATC	2 cut(s)	60, 169
BceAI	ACGGC	2 cut(s)	109, 139
BciT130I	CCWGG	1 cut(s)	252
BcoDI	GTCTC	1 cut(s)	327
BfaI	CTAG	3 cut(s)	6, 321, 330
Bme1390I	CCNGG	1 cut(s)	252
BmiI	GGNNCC	1 cut(s)	237
BmrFI	CCNGG	1 cut(s)	252
BmsI	GCATC	2 cut(s)	147, 180
BpiI	GAAGAC	1 cut(s)	35
Bpu10I	CCTNAGC	1 cut(s)	13
BsaWI	WCCGGW	1 cut(s)	117
Bse3DI	GCAATG	1 cut(s)	114
BseBI	CCWGG	1 cut(s)	252
BseGI	GGATG	1 cut(s)	311
BseMI	GCAATG	1 cut(s)	114
BseRI	GAGGAG	1 cut(s)	164
BsiSI	CCGG	1 cut(s)	118
BsmAI	GTCTC	1 cut(s)	327
Bsp143I	GATC	1 cut(s)	8
BspACI	CCGC	1 cut(s)	193
BspLI	GGNNCC	1 cut(s)	237
BspPI	GGATC	1 cut(s)	3
BsrDI	GCAATG	1 cut(s)	114
BssMI	GATC	1 cut(s)	8
Bst2UI	CCWGG	1 cut(s)	252
Bst4CI	ACNGT	2 cut(s)	73, 201
BstDEI	CTNAG	1 cut(s)	13
BstF5I	GGATG	1 cut(s)	311
BstKTI	GATC	1 cut(s)	11
BstMAI	GTCTC	1 cut(s)	327
BstMBI	GATC	1 cut(s)	8
BstNI	CCWGG	1 cut(s)	252
BstSCI	CCNGG	1 cut(s)	250
BstV2I	GAAGAC	1 cut(s)	35
BstX2I	RGATCY	1 cut(s)	8
BstYI	RGATCY	1 cut(s)	8
BtsCI	GGATG	1 cut(s)	311
CseI	GACGC	1 cut(s)	113
CsiI	ACCWGGT	1 cut(s)	250
Csp6I	GTAC	1 cut(s)	202
CviJI	RGCY	3 cut(s)	17, 210, 287
CviKI_1	RGCY	3 cut(s)	17, 210, 287
CviQI	GTAC	1 cut(s)	202
DdeI	CTNAG	1 cut(s)	13
DpnI	GATC	1 cut(s)	10
DpnII	GATC	1 cut(s)	8
EcoRII	CCWGG	1 cut(s)	250
FaiI	YATR	2 cut(s)	206, 233
FokI	GGATG	1 cut(s)	318
FspBI	CTAG	3 cut(s)	6, 321, 330
HapII	CCGG	1 cut(s)	118
HgaI	GACGC	1 cut(s)	113
HinfI	GANTC	1 cut(s)	79
HpaII	CCGG	1 cut(s)	118
Hpy166II	GTNNAC	2 cut(s)	25, 91
Hpy188I	TCNGA	5 cut(s)	78, 134, 166, 177, 246
Hpy188III	TCNNGA	2 cut(s)	6, 349
Hpy8I	GTNNAC	2 cut(s)	25, 91
Hpy99I	CGWCG	2 cut(s)	88, 107
HpyAV	CCTTC	1 cut(s)	137
HpyCH4III	ACNGT	2 cut(s)	73, 201
HpyF3I	CTNAG	1 cut(s)	13
Kzo9I	GATC	1 cut(s)	8
LpnPI	CCDG	5 cut(s)	131, 237, 264, 264, 269
LweI	GCATC	2 cut(s)	147, 180
MabI	ACCWGGT	1 cut(s)	250
MaeI	CTAG	3 cut(s)	6, 321, 330
MaeIII	GTNAC	1 cut(s)	67
MalI	GATC	1 cut(s)	10
MboI	GATC	1 cut(s)	8
MboII	GAAGA	2 cut(s)	35, 152
MflI	RGATCY	1 cut(s)	8
MmeI	TCCRAC	1 cut(s)	155
MnlI	CCTC	3 cut(s)	130, 142, 296
MseI	TTAA	1 cut(s)	221
MspI	CCGG	1 cut(s)	118
MspR9I	CCNGG	1 cut(s)	252
MvaI	CCWGG	1 cut(s)	252
NdeII	GATC	1 cut(s)	8
NlaIV	GGNNCC	1 cut(s)	237
NmuCI	GTSAC	1 cut(s)	67
PcsI	WCGNNNNNNNCGW	1 cut(s)	99
PfeI	GAWTC	1 cut(s)	79
Psp6I	CCWGG	1 cut(s)	250
PspGI	CCWGG	1 cut(s)	250
PspN4I	GGNNCC	1 cut(s)	237
PsuI	RGATCY	1 cut(s)	8
RsaI	GTAC	1 cut(s)	203
RsaNI	GTAC	1 cut(s)	202
SaqAI	TTAA	1 cut(s)	221
Sau3AI	GATC	1 cut(s)	8
ScrFI	CCNGG	1 cut(s)	252
SetI	ASST	4 cut(s)	19, 212, 256, 326
SexAI	ACCWGGT	1 cut(s)	250
SfaNI	GCATC	2 cut(s)	147, 180
SsiI	CCGC	1 cut(s)	193
SspMI	CTAG	3 cut(s)	6, 321, 330
StyD4I	CCNGG	1 cut(s)	250
TaaI	ACNGT	2 cut(s)	73, 201
TaqI	TCGA	1 cut(s)	102
TatI	WGTACW	1 cut(s)	201
TfiI	GAWTC	1 cut(s)	79
Tru1I	TTAA	1 cut(s)	221
Tru9I	TTAA	1 cut(s)	221
TseFI	GTSAC	1 cut(s)	67
Tsp45I	GTSAC	1 cut(s)	67
TspGWI	ACGGA	2 cut(s)	55, 72
XbaI	TCTAGA	1 cut(s)	5
XspI	CTAG	3 cut(s)	6, 321, 330

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.