Rapid ALkalinization Factor (RALF)
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT3G23805 AT4G13950 |
| fragaria_vesca | FvH4_4g13250 |
| malus_domestica | MD04G1017300.v1.1 MD13G1281800.v1.1 |
| prunus_persica | Prupe.1G165400_v2.0.a1 |
| rosa_chinensis | RchiOBHm_Chr4g0413501 |
| rosa_laevigata | RLG00000008215 |
| rosa_multiflora | Rmu_sc0000883.1_g000006 |
| rosa_roxburghii | Rroxscaffold_5G00357400 |
| rosa_rugosa | Rorug04G0120700 |
| rosa_samantha | Rh4AG180400 Rh4BG179700 Rh4CG191500 Rh4DG175700 |
| rosa_wichuraiana | Rw4G015030 Rw4G015080 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 1 cut(s) | 323 |
| AclWI | GGATC | 1 cut(s) | 52 |
| AfaI | GTAC | 1 cut(s) | 242 |
| AjnI | CCWGG | 1 cut(s) | 289 |
| AluBI | AGCT | 3 cut(s) | 95, 146, 249 |
| AluI | AGCT | 3 cut(s) | 95, 146, 249 |
| Alw26I | GTCTC | 1 cut(s) | 248 |
| AlwI | GGATC | 1 cut(s) | 52 |
| AoxI | GGCC | 1 cut(s) | 153 |
| AspS9I | GGNCC | 1 cut(s) | 153 |
| BbsI | GAAGAC | 1 cut(s) | 22 |
| BccI | CCATC | 1 cut(s) | 125 |
| BciT130I | CCWGG | 1 cut(s) | 291 |
| BcoDI | GTCTC | 1 cut(s) | 248 |
| BfaI | CTAG | 1 cut(s) | 224 |
| BisI | GCNGC | 1 cut(s) | 324 |
| BlsI | GCNGC | 1 cut(s) | 325 |
| Bme1390I | CCNGG | 1 cut(s) | 291 |
| BmgT120I | GGNCC | 1 cut(s) | 153 |
| BmiI | GGNNCC | 1 cut(s) | 276 |
| BmrFI | CCNGG | 1 cut(s) | 291 |
| BpiI | GAAGAC | 1 cut(s) | 22 |
| BsaJI | CCNNGG | 1 cut(s) | 290 |
| Bse3DI | GCAATG | 2 cut(s) | 88, 234 |
| BseBI | CCWGG | 1 cut(s) | 291 |
| BseDI | CCNNGG | 1 cut(s) | 290 |
| BseMI | GCAATG | 2 cut(s) | 88, 234 |
| BseMII | CTCAG | 1 cut(s) | 251 |
| BseRI | GAGGAG | 1 cut(s) | 277 |
| BshFI | GGCC | 1 cut(s) | 155 |
| BslFI | GGGAC | 1 cut(s) | 281 |
| BsmAI | GTCTC | 1 cut(s) | 248 |
| BsmFI | GGGAC | 1 cut(s) | 281 |
| BsnI | GGCC | 1 cut(s) | 155 |
| Bsp143I | GATC | 2 cut(s) | 57, 207 |
| BspACI | CCGC | 1 cut(s) | 323 |
| BspANI | GGCC | 1 cut(s) | 155 |
| BspCNI | CTCAG | 1 cut(s) | 252 |
| BspLI | GGNNCC | 1 cut(s) | 276 |
| BspPI | GGATC | 1 cut(s) | 52 |
| BsrDI | GCAATG | 2 cut(s) | 88, 234 |
| BssECI | CCNNGG | 1 cut(s) | 290 |
| BssMI | GATC | 2 cut(s) | 57, 207 |
| Bst2UI | CCWGG | 1 cut(s) | 291 |
| Bst4CI | ACNGT | 1 cut(s) | 338 |
| BstC8I | GCNNGC | 1 cut(s) | 157 |
| BstDEI | CTNAG | 1 cut(s) | 260 |
| BstKTI | GATC | 2 cut(s) | 60, 210 |
| BstMAI | GTCTC | 1 cut(s) | 248 |
| BstMBI | GATC | 2 cut(s) | 57, 207 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 152, 323 |
| BstNI | CCWGG | 1 cut(s) | 291 |
| BstSCI | CCNGG | 1 cut(s) | 289 |
| BstV2I | GAAGAC | 1 cut(s) | 22 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 170 |
| BsuRI | GGCC | 1 cut(s) | 155 |
| BtsIMutI | CAGTG | 2 cut(s) | 110, 257 |
| Cac8I | GCNNGC | 1 cut(s) | 157 |
| Cfr13I | GGNCC | 1 cut(s) | 153 |
| Csp6I | GTAC | 1 cut(s) | 241 |
| CviAII | CATG | 3 cut(s) | 28, 279, 314 |
| CviJI | RGCY | 7 cut(s) | 95, 146, 155, 190, 249, 296, 345 |
| CviKI_1 | RGCY | 7 cut(s) | 95, 146, 155, 190, 249, 296, 345 |
| CviQI | GTAC | 1 cut(s) | 241 |
| DdeI | CTNAG | 1 cut(s) | 260 |
| DpnI | GATC | 2 cut(s) | 59, 209 |
| DpnII | GATC | 2 cut(s) | 57, 207 |
| EcoO109I | RGGNCCY | 1 cut(s) | 153 |
| EcoRII | CCWGG | 1 cut(s) | 289 |
| FaeI | CATG | 3 cut(s) | 31, 282, 317 |
| FaiI | YATR | 8 cut(s) | 29, 63, 137, 245, 252, 280, 301, 315 |
| FaqI | GGGAC | 1 cut(s) | 281 |
| FatI | CATG | 3 cut(s) | 27, 278, 313 |
| Fnu4HI | GCNGC | 1 cut(s) | 324 |
| Fsp4HI | GCNGC | 1 cut(s) | 324 |
| FspBI | CTAG | 1 cut(s) | 224 |
| GluI | GCNGC | 1 cut(s) | 324 |
| HaeIII | GGCC | 1 cut(s) | 155 |
| Hin1II | CATG | 3 cut(s) | 31, 282, 317 |
| HinfI | GANTC | 1 cut(s) | 200 |
| Hpy188I | TCNGA | 1 cut(s) | 205 |
| HpyAV | CCTTC | 1 cut(s) | 144 |
| HpyCH4III | ACNGT | 1 cut(s) | 338 |
| HpyCH4V | TGCA | 4 cut(s) | 81, 159, 232, 368 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 152, 323 |
| HpyF3I | CTNAG | 1 cut(s) | 260 |
| Hsp92II | CATG | 3 cut(s) | 31, 282, 317 |
| Kzo9I | GATC | 2 cut(s) | 57, 207 |
| LmnI | GCTCC | 1 cut(s) | 143 |
| LpnPI | CCDG | 9 cut(s) | 25, 52, 132, 169, 176, 199, 204, 276, 303 |
| MaeI | CTAG | 1 cut(s) | 224 |
| MalI | GATC | 2 cut(s) | 59, 209 |
| MboI | GATC | 2 cut(s) | 57, 207 |
| MboII | GAAGA | 3 cut(s) | 27, 178, 247 |
| MfeI | CAATTG | 1 cut(s) | 307 |
| MluCI | AATT | 3 cut(s) | 106, 126, 307 |
| MlyI | GAGTC | 1 cut(s) | 209 |
| MnlI | CCTC | 7 cut(s) | 59, 113, 255, 258, 335, 343, 365 |
| MspR9I | CCNGG | 1 cut(s) | 291 |
| MunI | CAATTG | 1 cut(s) | 307 |
| MvaI | CCWGG | 1 cut(s) | 291 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 152, 323 |
| NdeII | GATC | 2 cut(s) | 57, 207 |
| NlaIII | CATG | 3 cut(s) | 31, 282, 317 |
| NlaIV | GGNNCC | 1 cut(s) | 276 |
| PkrI | GCNGC | 1 cut(s) | 325 |
| PleI | GAGTC | 1 cut(s) | 208 |
| PpsI | GAGTC | 1 cut(s) | 208 |
| Psp6I | CCWGG | 1 cut(s) | 289 |
| PspGI | CCWGG | 1 cut(s) | 289 |
| PspN4I | GGNNCC | 1 cut(s) | 276 |
| PspPI | GGNCC | 1 cut(s) | 153 |
| RsaI | GTAC | 1 cut(s) | 242 |
| RsaNI | GTAC | 1 cut(s) | 241 |
| SatI | GCNGC | 1 cut(s) | 324 |
| Sau3AI | GATC | 2 cut(s) | 57, 207 |
| Sau96I | GGNCC | 1 cut(s) | 153 |
| SchI | GAGTC | 1 cut(s) | 209 |
| ScrFI | CCNGG | 1 cut(s) | 291 |
| SetI | ASST | 6 cut(s) | 97, 105, 148, 251, 354, 376 |
| Sse9I | AATT | 3 cut(s) | 106, 126, 307 |
| SsiI | CCGC | 1 cut(s) | 323 |
| SspMI | CTAG | 1 cut(s) | 224 |
| StyD4I | CCNGG | 1 cut(s) | 289 |
| TaaI | ACNGT | 1 cut(s) | 338 |
| TasI | AATT | 3 cut(s) | 106, 126, 307 |
| TatI | WGTACW | 1 cut(s) | 240 |
| TauI | GCSGC | 1 cut(s) | 326 |
| TscAI | CASTG | 2 cut(s) | 117, 264 |
| TspDTI | ATGAA | 1 cut(s) | 288 |
| TspRI | CASTG | 2 cut(s) | 117, 264 |
| XspI | CTAG | 1 cut(s) | 224 |