Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0000883.1

Orthogroup ID

OG0014259

Physical Location & Seq

Genomic Coordinates Reverse (-)

31380 .. 31736

Gene Structure 357 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0000883.1_g000006.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 357 bp

atgttcaaactcagagacaatcccatcttaatcttgtatctttgcctcctcttgatccttacccatttctcaatctgcaatggggtgtcagttcttgacctcagtgcactcaaaggaagtgaaattgatgtcaaggttagggacttcataacagagccagagatggactcagagataagtagaagagtgctagcaatgcagaagaagtacataagctatgagacactgaggagggacttggttccttgtgcaaggccaggggcttcatactacaattgccatgctgtggccaacccttataatagaggctgtgaggttatcacaggatgtagaggtacacatgacatcaaaacttga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005911 GO:0007154 GO:0007165 GO:0007267 GO:0008150 GO:0009506 GO:0009966 GO:0009987 GO:0010469 GO:0010646 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030054 GO:0030545 GO:0035556 GO:0048018 GO:0048046 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RALF

Protein Analysis

118

Amino Acids

13.38

Weight (kDa)

8.23

Isoelectric Point (pI)

36.87

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0014259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23805 AT4G13950
fragaria_vesca	FvH4_4g13250
malus_domestica	MD04G1017300.v1.1 MD13G1281800.v1.1
prunus_persica	Prupe.1G165400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0413501
rosa_laevigata	RLG00000008215
rosa_multiflora	Rmu_sc0000883.1_g000006
rosa_roxburghii	Rroxscaffold_5G00357400
rosa_rugosa	Rorug04G0120700
rosa_samantha	Rh4AG180400 Rh4BG179700 Rh4CG191500 Rh4DG175700
rosa_wichuraiana	Rw4G015030 Rw4G015080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	300
AccB7I	CCANNNNNTGG	1 cut(s)	286
AclWI	GGATC	1 cut(s)	49
AcoI	YGGCCR	1 cut(s)	288
AfaI	GTAC	2 cut(s)	209, 337
AfiI	CCNNNNNNNGG	1 cut(s)	286
AgsI	TTSAA	1 cut(s)	7
AjnI	CCWGG	1 cut(s)	256
AluBI	AGCT	1 cut(s)	216
AluI	AGCT	1 cut(s)	216
Alw21I	GWGCWC	1 cut(s)	109
Alw26I	GTCTC	2 cut(s)	9, 215
Alw44I	GTGCAC	1 cut(s)	105
AlwI	GGATC	1 cut(s)	49
AoxI	GGCC	2 cut(s)	254, 288
ApaLI	GTGCAC	1 cut(s)	105
AsuNHI	GCTAGC	1 cut(s)	190
BaeGI	GKGCMC	1 cut(s)	109
BalI	TGGCCA	1 cut(s)	290
Bbv12I	GWGCWC	1 cut(s)	109
BccI	CCATC	2 cut(s)	32, 157
BciT130I	CCWGG	1 cut(s)	258
BcoDI	GTCTC	2 cut(s)	9, 215
BfaI	CTAG	1 cut(s)	191
Bme1390I	CCNGG	1 cut(s)	258
BmiI	GGNNCC	1 cut(s)	243
BmrFI	CCNGG	1 cut(s)	258
BmtI	GCTAGC	1 cut(s)	194
BplI	GAGNNNNNCTC	2 cut(s)	152, 184
BsaJI	CCNNGG	1 cut(s)	257
Bsc4I	CCNNNNNNNGG	1 cut(s)	286
Bse3DI	GCAATG	2 cut(s)	85, 201
BseBI	CCWGG	1 cut(s)	258
BseDI	CCNNGG	1 cut(s)	257
BseGI	GGATG	1 cut(s)	332
BseLI	CCNNNNNNNGG	1 cut(s)	286
BseMI	GCAATG	2 cut(s)	85, 201
BseMII	CTCAG	4 cut(s)	25, 115, 183, 218
BseRI	GAGGAG	2 cut(s)	38, 244
BseSI	GKGCMC	1 cut(s)	109
BshFI	GGCC	2 cut(s)	256, 290
BsiHKAI	GWGCWC	1 cut(s)	109
BslFI	GGGAC	2 cut(s)	155, 248
BslI	CCNNNNNNNGG	1 cut(s)	286
BsmAI	GTCTC	2 cut(s)	9, 215
BsmFI	GGGAC	2 cut(s)	155, 248
BsnI	GGCC	2 cut(s)	256, 290
Bsp1286I	GDGCHC	1 cut(s)	109
Bsp143I	GATC	1 cut(s)	54
BspANI	GGCC	2 cut(s)	256, 290
BspCNI	CTCAG	4 cut(s)	24, 114, 182, 219
BspLI	GGNNCC	1 cut(s)	243
BspOI	GCTAGC	1 cut(s)	194
BspPI	GGATC	1 cut(s)	49
BsrDI	GCAATG	2 cut(s)	85, 201
BssECI	CCNNGG	1 cut(s)	257
BssMI	GATC	1 cut(s)	54
Bst2UI	CCWGG	1 cut(s)	258
Bst6I	CTCTTC	1 cut(s)	178
BstC8I	GCNNGC	1 cut(s)	192
BstDEI	CTNAG	4 cut(s)	11, 101, 169, 227
BstF5I	GGATG	1 cut(s)	332
BstKTI	GATC	1 cut(s)	57
BstMAI	GTCTC	2 cut(s)	9, 215
BstMBI	GATC	1 cut(s)	54
BstMWI	GCNNNNNNNGC	1 cut(s)	196
BstNI	CCWGG	1 cut(s)	258
BstSCI	CCNGG	1 cut(s)	256
BstSLI	GKGCMC	1 cut(s)	109
BsuRI	GGCC	2 cut(s)	256, 290
BtsCI	GGATG	1 cut(s)	332
BtsIMutI	CAGTG	2 cut(s)	109, 224
Cac8I	GCNNGC	1 cut(s)	192
Csp6I	GTAC	2 cut(s)	208, 336
CviAII	CATG	2 cut(s)	281, 341
CviJI	RGCY	6 cut(s)	157, 216, 256, 263, 290, 309
CviKI_1	RGCY	6 cut(s)	157, 216, 256, 263, 290, 309
CviQI	GTAC	2 cut(s)	208, 336
DdeI	CTNAG	4 cut(s)	11, 101, 169, 227
DpnI	GATC	1 cut(s)	56
DpnII	GATC	1 cut(s)	54
EaeI	YGGCCR	1 cut(s)	288
Eam1104I	CTCTTC	1 cut(s)	178
EarI	CTCTTC	1 cut(s)	178
EcoRII	CCWGG	1 cut(s)	256
FaeI	CATG	2 cut(s)	284, 344
FaiI	YATR	7 cut(s)	149, 212, 219, 268, 282, 300, 342
FaqI	GGGAC	2 cut(s)	155, 248
FatI	CATG	2 cut(s)	280, 340
FokI	GGATG	1 cut(s)	339
FspBI	CTAG	1 cut(s)	191
HaeIII	GGCC	2 cut(s)	256, 290
Hin1II	CATG	2 cut(s)	284, 344
HinfI	GANTC	1 cut(s)	167
Hpy166II	GTNNAC	2 cut(s)	107, 338
Hpy188I	TCNGA	2 cut(s)	14, 172
Hpy188III	TCNNGA	2 cut(s)	52, 95
Hpy8I	GTNNAC	2 cut(s)	107, 338
HpyCH4V	TGCA	4 cut(s)	78, 107, 199, 251
HpyF10VI	GCNNNNNNNGC	1 cut(s)	196
HpyF3I	CTNAG	4 cut(s)	11, 101, 169, 227
Hsp92II	CATG	2 cut(s)	284, 344
Kzo9I	GATC	1 cut(s)	54
LpnPI	CCDG	4 cut(s)	171, 243, 270, 309
MaeI	CTAG	1 cut(s)	191
MalI	GATC	1 cut(s)	56
MboI	GATC	1 cut(s)	54
MboII	GAAGA	2 cut(s)	195, 214
MfeI	CAATTG	1 cut(s)	274
MhlI	GDGCHC	1 cut(s)	109
MlsI	TGGCCA	1 cut(s)	290
MluCI	AATT	2 cut(s)	123, 274
MluNI	TGGCCA	1 cut(s)	290
MlyI	GAGTC	1 cut(s)	161
MnlI	CCTC	8 cut(s)	56, 59, 110, 222, 225, 299, 307, 326
Mox20I	TGGCCA	1 cut(s)	290
MscI	TGGCCA	1 cut(s)	290
MseI	TTAA	1 cut(s)	29
Msp20I	TGGCCA	1 cut(s)	290
MspR9I	CCNGG	1 cut(s)	258
MunI	CAATTG	1 cut(s)	274
MvaI	CCWGG	1 cut(s)	258
MwoI	GCNNNNNNNGC	1 cut(s)	196
NdeII	GATC	1 cut(s)	54
NheI	GCTAGC	1 cut(s)	190
NlaIII	CATG	2 cut(s)	284, 344
NlaIV	GGNNCC	1 cut(s)	243
PflMI	CCANNNNNTGG	1 cut(s)	286
PleI	GAGTC	1 cut(s)	161
PpsI	GAGTC	1 cut(s)	161
PsiI	TTATAA	1 cut(s)	300
Psp6I	CCWGG	1 cut(s)	256
PspGI	CCWGG	1 cut(s)	256
PspN4I	GGNNCC	1 cut(s)	243
RsaI	GTAC	2 cut(s)	209, 337
RsaNI	GTAC	2 cut(s)	208, 336
SaqAI	TTAA	1 cut(s)	29
Sau3AI	GATC	1 cut(s)	54
SchI	GAGTC	1 cut(s)	161
ScrFI	CCNGG	1 cut(s)	258
SduI	GDGCHC	1 cut(s)	109
SetI	ASST	5 cut(s)	102, 138, 218, 318, 337
Sse9I	AATT	2 cut(s)	123, 274
SspMI	CTAG	1 cut(s)	191
StyD4I	CCNGG	1 cut(s)	256
TasI	AATT	2 cut(s)	123, 274
TatI	WGTACW	1 cut(s)	207
Tru1I	TTAA	1 cut(s)	29
Tru9I	TTAA	1 cut(s)	29
TscAI	CASTG	2 cut(s)	109, 231
TspDTI	ATGAA	2 cut(s)	136, 255
TspRI	CASTG	2 cut(s)	109, 231
Van91I	CCANNNNNTGG	1 cut(s)	286
VneI	GTGCAC	1 cut(s)	105
XspI	CTAG	1 cut(s)	191

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.