Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000005

Orthogroup ID

OG0014259

Physical Location & Seq

Genomic Coordinates Forward (+)

37015065 .. 37015529

Gene Structure 465 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_5G00357400.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 465 bp

ATGGCTGATGTCCCAAGGCCCTTTATGAGCCATCCAACCACCCAGAATCCCACTCTCCCAGTCCCAAAAACAAAAACACAAAGAAGCCCCAACACAGAGAACATCAAAATGTCCAAACTCAGAGACAATCCCATCTTAATCTTGTATCTTGGCCTCCTCTTAATCCTTACCCATTTCTCAATCTGCAATGGGGCGTCAGTTCTTGACCTCAGTGCACTCAAAGGAAGTGAAATTGATGTCAAGGTTGGGGACTTCATAACAGAGCCAGAGATGGACTCAGAGATAAGTAGAAGAGTGCTAGCAATGCAGAAGAGGTACATAAGCTATGAGACACTGAGGAGGGACTTGGTTCCTTGTGCAAGGCCAGGGGCTTCATACTACAATTGCCATGCTGTGGCCAACCCTTATAATAGAGGCTGTGAGGTCATCACAGGATGTAGAGGTACACATGACATCAAAACTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005911 GO:0007154 GO:0007165 GO:0007267 GO:0008150 GO:0009506 GO:0009966 GO:0009987 GO:0010469 GO:0010646 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030054 GO:0030545 GO:0035556 GO:0048018 GO:0048046 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RALF

Protein Analysis

154

Amino Acids

17.22

Weight (kDa)

8.85

Isoelectric Point (pI)

53.28

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RALF	PF05498	88 - 148	1.1e-26	Rapid ALkalinization Factor (RALF)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

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Publication-ready

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Orthologous Genes (Group: OG0014259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23805 AT4G13950
fragaria_vesca	FvH4_4g13250
malus_domestica	MD04G1017300.v1.1 MD13G1281800.v1.1
prunus_persica	Prupe.1G165400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0413501
rosa_laevigata	RLG00000008215
rosa_multiflora	Rmu_sc0000883.1_g000006
rosa_roxburghii	Rroxscaffold_5G00357400
rosa_rugosa	Rorug04G0120700
rosa_samantha	Rh4AG180400 Rh4BG179700 Rh4CG191500 Rh4DG175700
rosa_wichuraiana	Rw4G015030 Rw4G015080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	408
AccB7I	CCANNNNNTGG	1 cut(s)	394
AcoI	YGGCCR	1 cut(s)	396
AcyI	GRCGYC	1 cut(s)	194
AfaI	GTAC	2 cut(s)	317, 445
AfiI	CCNNNNNNNGG	1 cut(s)	394
AjnI	CCWGG	1 cut(s)	364
AluBI	AGCT	1 cut(s)	324
AluI	AGCT	1 cut(s)	324
Alw21I	GWGCWC	1 cut(s)	217
Alw26I	GTCTC	2 cut(s)	117, 323
Alw44I	GTGCAC	1 cut(s)	213
AoxI	GGCC	4 cut(s)	17, 151, 362, 396
ApaLI	GTGCAC	1 cut(s)	213
AspS9I	GGNCC	1 cut(s)	18
AsuNHI	GCTAGC	1 cut(s)	298
BaeGI	GKGCMC	1 cut(s)	217
BalI	TGGCCA	1 cut(s)	398
Bbv12I	GWGCWC	1 cut(s)	217
BccI	CCATC	3 cut(s)	39, 140, 265
BciT130I	CCWGG	1 cut(s)	366
BcoDI	GTCTC	2 cut(s)	117, 323
BfaI	CTAG	1 cut(s)	299
Bme1390I	CCNGG	1 cut(s)	366
BmgT120I	GGNCC	1 cut(s)	18
BmiI	GGNNCC	1 cut(s)	351
BmrFI	CCNGG	1 cut(s)	366
BmrI	ACTGGG	1 cut(s)	53
BmtI	GCTAGC	1 cut(s)	302
BmuI	ACTGGG	1 cut(s)	53
BplI	GAGNNNNNCTC	2 cut(s)	260, 292
BsaHI	GRCGYC	1 cut(s)	194
BsaJI	CCNNGG	2 cut(s)	14, 365
Bsc4I	CCNNNNNNNGG	1 cut(s)	394
Bse1I	ACTGG	1 cut(s)	59
Bse3DI	GCAATG	2 cut(s)	193, 309
BseBI	CCWGG	1 cut(s)	366
BseDI	CCNNGG	2 cut(s)	14, 365
BseGI	GGATG	2 cut(s)	31, 440
BseLI	CCNNNNNNNGG	1 cut(s)	394
BseMI	GCAATG	2 cut(s)	193, 309
BseMII	CTCAG	4 cut(s)	133, 223, 291, 326
BseNI	ACTGG	1 cut(s)	59
BseRI	GAGGAG	2 cut(s)	146, 352
BseSI	GKGCMC	1 cut(s)	217
BshFI	GGCC	4 cut(s)	19, 153, 364, 398
BsiHKAI	GWGCWC	1 cut(s)	217
BslFI	GGGAC	3 cut(s)	47, 263, 356
BslI	CCNNNNNNNGG	1 cut(s)	394
BsmAI	GTCTC	2 cut(s)	117, 323
BsmFI	GGGAC	3 cut(s)	47, 263, 356
BsnI	GGCC	4 cut(s)	19, 153, 364, 398
Bsp1286I	GDGCHC	1 cut(s)	217
BspANI	GGCC	4 cut(s)	19, 153, 364, 398
BspCNI	CTCAG	4 cut(s)	132, 222, 290, 327
BspLI	GGNNCC	1 cut(s)	351
BspOI	GCTAGC	1 cut(s)	302
BsrDI	GCAATG	2 cut(s)	193, 309
BsrI	ACTGG	1 cut(s)	59
BssECI	CCNNGG	2 cut(s)	14, 365
BssNI	GRCGYC	1 cut(s)	194
BssT1I	CCWWGG	1 cut(s)	14
Bst2UI	CCWGG	1 cut(s)	366
Bst6I	CTCTTC	2 cut(s)	286, 305
BstACI	GRCGYC	1 cut(s)	194
BstC8I	GCNNGC	1 cut(s)	300
BstDEI	CTNAG	4 cut(s)	119, 209, 277, 335
BstF5I	GGATG	2 cut(s)	31, 440
BstMAI	GTCTC	2 cut(s)	117, 323
BstMWI	GCNNNNNNNGC	1 cut(s)	304
BstNI	CCWGG	1 cut(s)	366
BstSCI	CCNGG	1 cut(s)	364
BstSLI	GKGCMC	1 cut(s)	217
BsuRI	GGCC	4 cut(s)	19, 153, 364, 398
BtsCI	GGATG	2 cut(s)	31, 440
BtsIMutI	CAGTG	2 cut(s)	217, 332
Cac8I	GCNNGC	1 cut(s)	300
Cfr13I	GGNCC	1 cut(s)	18
CseI	GACGC	1 cut(s)	183
Csp6I	GTAC	2 cut(s)	316, 444
CviAII	CATG	2 cut(s)	389, 449
CviQI	GTAC	2 cut(s)	316, 444
DdeI	CTNAG	4 cut(s)	119, 209, 277, 335
EaeI	YGGCCR	1 cut(s)	396
Eam1104I	CTCTTC	2 cut(s)	286, 305
EarI	CTCTTC	2 cut(s)	286, 305
Eco130I	CCWWGG	1 cut(s)	14
EcoO109I	RGGNCCY	1 cut(s)	18
EcoRII	CCWGG	1 cut(s)	364
EcoT14I	CCWWGG	1 cut(s)	14
ErhI	CCWWGG	1 cut(s)	14
FaeI	CATG	2 cut(s)	392, 452
FaiI	YATR	8 cut(s)	26, 257, 320, 327, 376, 390, 408, 450
FaqI	GGGAC	3 cut(s)	47, 263, 356
FatI	CATG	2 cut(s)	388, 448
FokI	GGATG	2 cut(s)	18, 447
FspBI	CTAG	1 cut(s)	299
HaeIII	GGCC	4 cut(s)	19, 153, 364, 398
HgaI	GACGC	1 cut(s)	183
Hin1I	GRCGYC	1 cut(s)	194
Hin1II	CATG	2 cut(s)	392, 452
HinfI	GANTC	2 cut(s)	46, 275
Hpy166II	GTNNAC	2 cut(s)	215, 446
Hpy188I	TCNGA	2 cut(s)	122, 280
Hpy188III	TCNNGA	1 cut(s)	203
Hpy8I	GTNNAC	2 cut(s)	215, 446
HpyCH4V	TGCA	4 cut(s)	186, 215, 307, 359
HpyF10VI	GCNNNNNNNGC	1 cut(s)	304
HpyF3I	CTNAG	4 cut(s)	119, 209, 277, 335
Hsp92I	GRCGYC	1 cut(s)	194
Hsp92II	CATG	2 cut(s)	392, 452
LpnPI	CCDG	6 cut(s)	56, 72, 279, 351, 378, 417
MaeI	CTAG	1 cut(s)	299
MboII	GAAGA	2 cut(s)	303, 322
MfeI	CAATTG	1 cut(s)	382
MhlI	GDGCHC	1 cut(s)	217
MlsI	TGGCCA	1 cut(s)	398
MluCI	AATT	2 cut(s)	231, 382
MluNI	TGGCCA	1 cut(s)	398
MlyI	GAGTC	1 cut(s)	269
MmeI	TCCRAC	1 cut(s)	59
MnlI	CCTC	9 cut(s)	164, 167, 218, 306, 330, 333, 407, 415, 434
Mox20I	TGGCCA	1 cut(s)	398
MscI	TGGCCA	1 cut(s)	398
MseI	TTAA	2 cut(s)	137, 161
MslI	CAYNNNNRTG	1 cut(s)	107
Msp20I	TGGCCA	1 cut(s)	398
MspR9I	CCNGG	1 cut(s)	366
MunI	CAATTG	1 cut(s)	382
MvaI	CCWGG	1 cut(s)	366
MwoI	GCNNNNNNNGC	1 cut(s)	304
NheI	GCTAGC	1 cut(s)	298
NlaIII	CATG	2 cut(s)	392, 452
NlaIV	GGNNCC	1 cut(s)	351
PfeI	GAWTC	1 cut(s)	46
PflMI	CCANNNNNTGG	1 cut(s)	394
PleI	GAGTC	1 cut(s)	269
PpsI	GAGTC	1 cut(s)	269
PsiI	TTATAA	1 cut(s)	408
Psp6I	CCWGG	1 cut(s)	364
PspGI	CCWGG	1 cut(s)	364
PspN4I	GGNNCC	1 cut(s)	351
PspPI	GGNCC	1 cut(s)	18
RsaI	GTAC	2 cut(s)	317, 445
RsaNI	GTAC	2 cut(s)	316, 444
RseI	CAYNNNNRTG	1 cut(s)	107
SaqAI	TTAA	2 cut(s)	137, 161
Sau96I	GGNCC	1 cut(s)	18
SchI	GAGTC	1 cut(s)	269
ScrFI	CCNGG	1 cut(s)	366
SduI	GDGCHC	1 cut(s)	217
SetI	ASST	6 cut(s)	210, 246, 317, 326, 426, 445
SmiMI	CAYNNNNRTG	1 cut(s)	107
Sse9I	AATT	2 cut(s)	231, 382
SspMI	CTAG	1 cut(s)	299
StyD4I	CCNGG	1 cut(s)	364
StyI	CCWWGG	1 cut(s)	14
TasI	AATT	2 cut(s)	231, 382
TfiI	GAWTC	1 cut(s)	46
Tru1I	TTAA	2 cut(s)	137, 161
Tru9I	TTAA	2 cut(s)	137, 161
TscAI	CASTG	2 cut(s)	217, 339
TspDTI	ATGAA	2 cut(s)	244, 363
TspRI	CASTG	2 cut(s)	217, 339
Van91I	CCANNNNNTGG	1 cut(s)	394
VneI	GTGCAC	1 cut(s)	213
XspI	CTAG	1 cut(s)	299

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.