Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0014259

Physical Location & Seq

Genomic Coordinates Reverse (-)

19143770 .. 19144021

Gene Structure 252 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0120700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 252 bp

ATGGCTTGCAGGGTGGCAATGGACTATGTTATTAGTCATCATCTTCATCCGGTCATTTTTGAGACGGACTGCTTGCTGTTAAAGCAGCAGCTATGTCAAAGTGATGGGCATAATTTCTCTATACTTGGTCGGATTTATGATGATGTTAGGGAAGTTCTGGGGGCCTTGCCTAATTTGAGGATTGAGTATGCCCGGAGGGAGACCAACAGAGCTTCACATCTTCTGGCAGCTTATGCATCTGCCAATGACTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0003674 GO:0005102 GO:0005179 GO:0005488 GO:0005515 GO:0005575 GO:0005576 GO:0005911 GO:0007154 GO:0007165 GO:0007267 GO:0008150 GO:0009506 GO:0009966 GO:0009987 GO:0010469 GO:0010646 GO:0019722 GO:0019932 GO:0023051 GO:0023052 GO:0030054 GO:0030545 GO:0035556 GO:0048018 GO:0048046 GO:0048583 GO:0050789 GO:0050794 GO:0050896 GO:0051716 GO:0055044 GO:0065007 GO:0065009 GO:0098772

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

RALF

Protein Analysis

83

Amino Acids

9.44

Weight (kDa)

6.16

Isoelectric Point (pI)

55.41

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
RVT_3	PF13456	2 - 79	1.6e-11	Reverse transcriptase-like

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

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Orthologous Genes (Group: OG0014259)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G23805 AT4G13950
fragaria_vesca	FvH4_4g13250
malus_domestica	MD04G1017300.v1.1 MD13G1281800.v1.1
prunus_persica	Prupe.1G165400_v2.0.a1
rosa_chinensis	RchiOBHm_Chr4g0413501
rosa_laevigata	RLG00000008215
rosa_multiflora	Rmu_sc0000883.1_g000006
rosa_roxburghii	Rroxscaffold_5G00357400
rosa_rugosa	Rorug04G0120700
rosa_samantha	Rh4AG180400 Rh4BG179700 Rh4CG191500 Rh4DG175700
rosa_wichuraiana	Rw4G015030 Rw4G015080

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AluBI	AGCT	3 cut(s)	91, 212, 230
AluI	AGCT	3 cut(s)	91, 212, 230
Alw26I	GTCTC	2 cut(s)	56, 194
AoxI	GGCC	1 cut(s)	162
ApeKI	GCWGC	3 cut(s)	85, 88, 227
AspS9I	GGNCC	1 cut(s)	162
AsuC2I	CCSGG	1 cut(s)	193
BbvI	GCAGC	3 cut(s)	97, 100, 239
BccI	CCATC	1 cut(s)	98
BcnI	CCSGG	1 cut(s)	193
BcoDI	GTCTC	2 cut(s)	56, 194
BfaI	CTAG	1 cut(s)	250
BisI	GCNGC	3 cut(s)	86, 89, 228
BlsI	GCNGC	3 cut(s)	87, 90, 229
Bme1390I	CCNGG	1 cut(s)	193
BmgT120I	GGNCC	1 cut(s)	162
BmiI	GGNNCC	1 cut(s)	163
BmrFI	CCNGG	1 cut(s)	193
BmsI	GCATC	1 cut(s)	245
BpuMI	CCSGG	1 cut(s)	193
BsaI	GGTCTC	1 cut(s)	194
BsaWI	WCCGGW	1 cut(s)	49
Bse3DI	GCAATG	1 cut(s)	24
BseGI	GGATG	1 cut(s)	46
BseMI	GCAATG	1 cut(s)	24
BseXI	GCAGC	3 cut(s)	97, 100, 239
BshFI	GGCC	1 cut(s)	164
BsiSI	CCGG	2 cut(s)	50, 193
BsmAI	GTCTC	2 cut(s)	56, 194
BsmBI	CGTCTC	1 cut(s)	56
BsnI	GGCC	1 cut(s)	164
Bso31I	GGTCTC	1 cut(s)	194
BspANI	GGCC	1 cut(s)	164
BspLI	GGNNCC	1 cut(s)	163
BspTNI	GGTCTC	1 cut(s)	194
BsrDI	GCAATG	1 cut(s)	24
BstAPI	GCANNNNNTGC	1 cut(s)	233
BstC8I	GCNNGC	2 cut(s)	7, 74
BstF5I	GGATG	1 cut(s)	46
BstMAI	GTCTC	2 cut(s)	56, 194
BstMWI	GCNNNNNNNGC	2 cut(s)	82, 233
BstSCI	CCNGG	1 cut(s)	191
BstV1I	GCAGC	3 cut(s)	97, 100, 239
BsuRI	GGCC	1 cut(s)	164
BtsCI	GGATG	1 cut(s)	46
Cac8I	GCNNGC	2 cut(s)	7, 74
Cfr13I	GGNCC	1 cut(s)	162
CviJI	RGCY	5 cut(s)	5, 91, 164, 212, 230
CviKI_1	RGCY	5 cut(s)	5, 91, 164, 212, 230
Eco31I	GGTCTC	1 cut(s)	194
EcoO109I	RGGNCCY	1 cut(s)	162
EcoT22I	ATGCAT	1 cut(s)	238
Esp3I	CGTCTC	1 cut(s)	56
FaiI	YATR	7 cut(s)	27, 94, 111, 122, 138, 189, 234
Fnu4HI	GCNGC	3 cut(s)	86, 89, 228
FokI	GGATG	1 cut(s)	33
Fsp4HI	GCNGC	3 cut(s)	86, 89, 228
FspBI	CTAG	1 cut(s)	250
GluI	GCNGC	3 cut(s)	86, 89, 228
HaeIII	GGCC	1 cut(s)	164
HapII	CCGG	2 cut(s)	50, 193
HpaII	CCGG	2 cut(s)	50, 193
Hpy188I	TCNGA	1 cut(s)	132
HpyCH4V	TGCA	2 cut(s)	9, 236
HpyF10VI	GCNNNNNNNGC	2 cut(s)	82, 233
LpnPI	CCDG	4 cut(s)	63, 143, 206, 209
Lsp1109I	GCAGC	3 cut(s)	97, 100, 239
LweI	GCATC	1 cut(s)	245
MaeI	CTAG	1 cut(s)	250
MboII	GAAGA	2 cut(s)	35, 212
MluCI	AATT	2 cut(s)	112, 172
MmeI	TCCRAC	1 cut(s)	110
MnlI	CCTC	2 cut(s)	171, 189
Mph1103I	ATGCAT	1 cut(s)	238
MseI	TTAA	1 cut(s)	80
MspI	CCGG	2 cut(s)	50, 193
MspR9I	CCNGG	1 cut(s)	193
MwoI	GCNNNNNNNGC	2 cut(s)	82, 233
NciI	CCSGG	1 cut(s)	193
NlaIV	GGNNCC	1 cut(s)	163
NsiI	ATGCAT	1 cut(s)	238
PkrI	GCNGC	3 cut(s)	87, 90, 229
PspN4I	GGNNCC	1 cut(s)	163
PspPI	GGNCC	1 cut(s)	162
SaqAI	TTAA	1 cut(s)	80
SatI	GCNGC	3 cut(s)	86, 89, 228
Sau96I	GGNCC	1 cut(s)	162
ScrFI	CCNGG	1 cut(s)	193
SetI	ASST	3 cut(s)	93, 214, 232
SfaNI	GCATC	1 cut(s)	245
Sse9I	AATT	2 cut(s)	112, 172
SspMI	CTAG	1 cut(s)	250
StyD4I	CCNGG	1 cut(s)	191
TasI	AATT	2 cut(s)	112, 172
Tru1I	TTAA	1 cut(s)	80
Tru9I	TTAA	1 cut(s)	80
TseI	GCWGC	3 cut(s)	85, 88, 227
TspDTI	ATGAA	1 cut(s)	35
TspGWI	ACGGA	1 cut(s)	80
XspI	CTAG	1 cut(s)	250
Zsp2I	ATGCAT	1 cut(s)	238

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.