AT3G24160

Type 1 membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
3
OG0005349
Physical Location & Seq
Forward (+)
8726056 .. 8729427
3372 bp
Loading structure...
UTR
Exon/CDS
Intron
AT3G24160.1

Sequence Viewer

Length: 1095 bp
ATGAAAGCTTTCTACGTATTCGTTGTTGCTCTTCTTCTCACCTTGAATTATAGGGGAGAAGCAAGTGGTTCTGTTTTCTTCATTGATGGATCCAACAATCAATATCTTCGTCCACGATCATCCAGTGAGGCACTTCCCATGTCGCCTGTTGAAATATCTGCAGCAGTGTCTGCCTTGTTGGGTTTTGCACCTTCAGCAACTTTGACAGCTGATGGCTCATCCAAGTTGAACAAGATTCTAAAACCTAATCCATTTGAGAGGCCTCGCGCTGCTTTTGTGCTAGAAATCGCTGGAGCTGATGATATGCTTTTGGAAACCTCCCCTAGTCATTCTTTCTTGGGCAATGCCATAAGGAGCAGTATTAAGTCTGATTCGTACAAAGCTGATACTGAACTTCCAGACAATGAAGTGGTTGTTGTGTCTGTCAATGAACCCTCCTCTGATGTGACTGACAAGGACATTAATGATTTTGCATCTTGGTTGGGTGGATCATATGTTGCTGGAGCTGAACCATCGTCTGGATTGTTGAGTATCCCTCTGGCTGGGGGTGCTAATGTGGAGTTCAATTTGGAAAAGGAAGCAGAGAGGAAATTTGCATTGAACCTTTTGGGTCTATATCAGAATATCAGACAGGCAGTCAGCGTTTATGACGATTTATCTCATGGTATTGACAGAACTGCCGAATTAACGGTTGGACGCTTTGGTGGTATCGATGCTTTAGCACAGGAGTATGGACAAGGTATGGCTAAGCAAGGGATGGATGTATTACTTTCCACATTATCAAAGCTATTCAATCTGTTGGAGACATCTCATAAAGGCCAAATTGTTGGGGTTATCGTCCTTGATGAGAGAGTAAACCAAGAATCAGAAAATCTTTTGAACTTTGGGTCTTCCCGTTCATCTGCACGCTCAATGGTGGAAGTGGAGGGAATTCCAAGTGCAGCCATTATCGCTGAGGTTATACTTGTTAGGCTGACTCTTGCATGGTTGACTGGAATCATTCTTCTCATTGCAACTATCCTTGGGGTATACTTCCTTATGAACATGCCTTTGACGAAGGATACTCTTCTATATTCAAATGTAAAGCTCGACTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04614 map04614
Pfam Domains
Protein Families
No domains found.

Protein Analysis

364

Amino Acids

39.13

Weight (kDa)

4.75

Isoelectric Point (pI)

35.18

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7794 PF25070 22 - 282 1.6e-96 Domain of unknown function (DUF7794)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 518
AccI GTMKAC 1 cut(s) 1029
AccII CGCG 1 cut(s) 267
AclWI GGATC 3 cut(s) 84, 97, 496
AcsI RAATTY 2 cut(s) 590, 930
AcuI CTGAAG 1 cut(s) 177
AfaI GTAC 1 cut(s) 377
AfiI CCNNNNNNNGG 2 cut(s) 518, 542
AgsI TTSAA 8 cut(s) 46, 152, 229, 565, 601, 793, 880, 1077
AhdI GACNNNNNGTC 1 cut(s) 635
AjuI GAANNNNNNNTTGG 2 cut(s) 675, 707
AluBI AGCT 7 cut(s) 8, 209, 296, 383, 506, 787, 1087
AluI AGCT 7 cut(s) 8, 209, 296, 383, 506, 787, 1087
Alw26I GTCTC 1 cut(s) 797
AlwI GGATC 3 cut(s) 84, 97, 496
AlwNI CAGNNNCTG 1 cut(s) 170
AoxI GGCC 2 cut(s) 260, 817
ApeKI GCWGC 3 cut(s) 161, 269, 941
ApoI RAATTY 2 cut(s) 590, 930
AseI ATTAAT 1 cut(s) 462
Asp700I GAANNNNTTC 1 cut(s) 8
AspLEI GCGC 1 cut(s) 269
AsuHPI GGTGA 1 cut(s) 31
BamHI GGATCC 1 cut(s) 89
BbsI GAAGAC 1 cut(s) 882
BbvCI CCTCAGC 1 cut(s) 954
BbvI GCAGC 3 cut(s) 173, 256, 953
BccI CCATC 4 cut(s) 80, 206, 520, 751
BciVI GTATCC 2 cut(s) 542, 1054
BcoDI GTCTC 1 cut(s) 797
BfaI CTAG 2 cut(s) 281, 324
BfmI CTRYAG 1 cut(s) 159
BfuI GTATCC 2 cut(s) 542, 1054
BisI GCNGC 3 cut(s) 162, 270, 942
BlpI GCTNAGC 1 cut(s) 747
BlsI GCNGC 3 cut(s) 163, 271, 943
BmeRI GACNNNNNGTC 1 cut(s) 635
BmiI GGNNCC 1 cut(s) 91
BmsI GCATC 2 cut(s) 482, 703
BpiI GAAGAC 1 cut(s) 882
BplI GAGNNNNNCTC 2 cut(s) 520, 552
BpmI CTGGAG 2 cut(s) 312, 522
Bpu10I CCTNAGC 1 cut(s) 954
Bpu1102I GCTNAGC 1 cut(s) 747
Bsa29I ATCGAT 1 cut(s) 711
BsaAI YACGTR 1 cut(s) 16
BsaJI CCNNGG 1 cut(s) 1021
Bsc4I CCNNNNNNNGG 2 cut(s) 518, 542
Bse1I ACTGG 2 cut(s) 123, 997
Bse3DI GCAATG 2 cut(s) 349, 1008
BseCI ATCGAT 1 cut(s) 711
BseDI CCNNGG 1 cut(s) 1021
BseGI GGATG 4 cut(s) 119, 218, 762, 766
BseLI CCNNNNNNNGG 2 cut(s) 518, 542
BseMI GCAATG 2 cut(s) 349, 1008
BseMII CTCAG 1 cut(s) 945
BseNI ACTGG 2 cut(s) 123, 997
BseRI GAGGAG 1 cut(s) 427
BseXI GCAGC 3 cut(s) 173, 256, 953
BseYI CCCAGC 1 cut(s) 542
BsgI GTGCAG 2 cut(s) 888, 960
Bsh1236I CGCG 1 cut(s) 267
BshFI GGCC 2 cut(s) 262, 819
BshVI ATCGAT 1 cut(s) 711
BslI CCNNNNNNNGG 2 cut(s) 518, 542
BsmAI GTCTC 1 cut(s) 797
BsnI GGCC 2 cut(s) 262, 819
Bsp143I GATC 3 cut(s) 89, 116, 488
Bsp1720I GCTNAGC 1 cut(s) 747
BspANI GGCC 2 cut(s) 262, 819
BspCNI CTCAG 1 cut(s) 946
BspDI ATCGAT 1 cut(s) 711
BspFNI CGCG 1 cut(s) 267
BspLI GGNNCC 1 cut(s) 91
BspMAI CTGCAG 1 cut(s) 163
BspPI GGATC 3 cut(s) 84, 97, 496
BspQI GCTCTTC 1 cut(s) 36
BsrDI GCAATG 2 cut(s) 349, 1008
BsrI ACTGG 2 cut(s) 123, 997
BssECI CCNNGG 1 cut(s) 1021
BssMI GATC 3 cut(s) 89, 116, 488
BssNAI GTATAC 1 cut(s) 1030
BssT1I CCWWGG 1 cut(s) 1021
Bst1107I GTATAC 1 cut(s) 1030
Bst4CI ACNGT 1 cut(s) 691
Bst6I CTCTTC 2 cut(s) 36, 1071
BstAPI GCANNNNNTGC 1 cut(s) 170
BstBAI YACGTR 1 cut(s) 16
BstC8I GCNNGC 1 cut(s) 907
BstDEI CTNAG 2 cut(s) 747, 954
BstF5I GGATG 4 cut(s) 119, 218, 762, 766
BstFNI CGCG 1 cut(s) 267
BstHHI GCGC 1 cut(s) 269
BstKTI GATC 3 cut(s) 92, 119, 491
BstMAI GTCTC 1 cut(s) 797
BstMBI GATC 3 cut(s) 89, 116, 488
BstMWI GCNNNNNNNGC 4 cut(s) 170, 194, 548, 950
BstNSI RCATGY 1 cut(s) 1048
BstSFI CTRYAG 1 cut(s) 159
BstSNI TACGTA 1 cut(s) 16
BstUI CGCG 1 cut(s) 267
BstV1I GCAGC 3 cut(s) 173, 256, 953
BstV2I GAAGAC 1 cut(s) 882
BstX2I RGATCY 1 cut(s) 89
BstXI CCANNNNNNTGG 1 cut(s) 827
BstYI RGATCY 1 cut(s) 89
BstZ17I GTATAC 1 cut(s) 1030
Bsu15I ATCGAT 1 cut(s) 711
BsuI GTATCC 2 cut(s) 542, 1054
BsuRI GGCC 2 cut(s) 262, 819
BsuTUI ATCGAT 1 cut(s) 711
BtsCI GGATG 4 cut(s) 119, 218, 762, 766
BtsI GCAGTG 1 cut(s) 171
BtsIMutI CAGTG 2 cut(s) 130, 171
Cac8I GCNNGC 1 cut(s) 907
CaiI CAGNNNCTG 1 cut(s) 170
CfoI GCGC 1 cut(s) 269
ClaI ATCGAT 1 cut(s) 711
CseI GACGC 1 cut(s) 705
Csp6I GTAC 1 cut(s) 376
CviAII CATG 4 cut(s) 139, 662, 984, 1045
CviQI GTAC 1 cut(s) 376
DdeI CTNAG 2 cut(s) 747, 954
DpnI GATC 3 cut(s) 91, 118, 490
DpnII GATC 3 cut(s) 89, 116, 488
DriI GACNNNNNGTC 1 cut(s) 635
Eam1104I CTCTTC 2 cut(s) 36, 1071
Eam1105I GACNNNNNGTC 1 cut(s) 635
EarI CTCTTC 2 cut(s) 36, 1071
Eco105I TACGTA 1 cut(s) 16
Eco130I CCWWGG 1 cut(s) 1021
Eco147I AGGCCT 1 cut(s) 262
Eco57I CTGAAG 1 cut(s) 177
EcoRI GAATTC 1 cut(s) 930
EcoT14I CCWWGG 1 cut(s) 1021
ErhI CCWWGG 1 cut(s) 1021
FaeI CATG 4 cut(s) 142, 665, 987, 1048
FatI CATG 4 cut(s) 138, 661, 983, 1044
FauNDI CATATG 1 cut(s) 493
FblI GTMKAC 1 cut(s) 1029
Fnu4HI GCNGC 3 cut(s) 162, 270, 942
FokI GGATG 4 cut(s) 106, 205, 769, 773
Fsp4HI GCNGC 3 cut(s) 162, 270, 942
FspBI CTAG 2 cut(s) 281, 324
GlaI GCGC 1 cut(s) 268
GluI GCNGC 3 cut(s) 162, 270, 942
GsaI CCCAGC 1 cut(s) 546
GsuI CTGGAG 2 cut(s) 312, 522
HaeIII GGCC 2 cut(s) 262, 819
HgaI GACGC 1 cut(s) 705
HhaI GCGC 1 cut(s) 269
Hin1II CATG 4 cut(s) 142, 665, 987, 1048
Hin6I GCGC 1 cut(s) 267
HinP1I GCGC 1 cut(s) 267
HincII GTYRAC 1 cut(s) 990
HindII GTYRAC 1 cut(s) 990
HindIII AAGCTT 1 cut(s) 6
HinfI GANTC 5 cut(s) 235, 371, 863, 976, 996
HphI GGTGA 1 cut(s) 31
Hpy166II GTNNAC 4 cut(s) 113, 856, 990, 1030
Hpy188I TCNGA 5 cut(s) 370, 442, 621, 629, 868
Hpy188III TCNNGA 2 cut(s) 398, 519
Hpy8I GTNNAC 4 cut(s) 113, 856, 990, 1030
HpyAV CCTTC 2 cut(s) 201, 1051
HpyCH4III ACNGT 1 cut(s) 691
HpyCH4IV ACGT 1 cut(s) 15
HpyCH4V TGCA 8 cut(s) 161, 188, 473, 596, 905, 941, 983, 1013
HpyF10VI GCNNNNNNNGC 4 cut(s) 170, 194, 548, 950
HpyF3I CTNAG 2 cut(s) 747, 954
HpySE526I ACGT 1 cut(s) 15
Hsp92II CATG 4 cut(s) 142, 665, 987, 1048
HspAI GCGC 1 cut(s) 267
Kzo9I GATC 3 cut(s) 89, 116, 488
LguI GCTCTTC 1 cut(s) 36
LmnI GCTCC 3 cut(s) 293, 354, 503
Lsp1109I GCAGC 3 cut(s) 173, 256, 953
LweI GCATC 2 cut(s) 482, 703
MaeI CTAG 2 cut(s) 281, 324
MaeII ACGT 1 cut(s) 15
MaeIII GTNAC 1 cut(s) 445
MalI GATC 3 cut(s) 91, 118, 490
MboI GATC 3 cut(s) 89, 116, 488
MboII GAAGA 7 cut(s) 23, 26, 70, 98, 882, 995, 1058
MflI RGATCY 1 cut(s) 89
MluCI AATT 6 cut(s) 46, 565, 590, 683, 822, 930
MlyI GAGTC 1 cut(s) 970
MmeI TCCRAC 3 cut(s) 117, 673, 780
MroXI GAANNNNTTC 1 cut(s) 8
MseI TTAA 3 cut(s) 363, 462, 686
MspA1I CMGCKG 1 cut(s) 209
MvnI CGCG 1 cut(s) 267
MwoI GCNNNNNNNGC 4 cut(s) 170, 194, 548, 950
NdeI CATATG 1 cut(s) 493
NdeII GATC 3 cut(s) 89, 116, 488
NlaIII CATG 4 cut(s) 142, 665, 987, 1048
NlaIV GGNNCC 1 cut(s) 91
NmuCI GTSAC 1 cut(s) 445
NspI RCATGY 1 cut(s) 1048
PceI AGGCCT 1 cut(s) 262
PciSI GCTCTTC 1 cut(s) 36
PdmI GAANNNNTTC 1 cut(s) 8
PfeI GAWTC 4 cut(s) 235, 371, 863, 996
PflMI CCANNNNNTGG 1 cut(s) 518
PkrI GCNGC 3 cut(s) 163, 271, 943
PleI GAGTC 1 cut(s) 970
PpsI GAGTC 1 cut(s) 970
Ppu21I YACGTR 1 cut(s) 16
PshBI ATTAAT 1 cut(s) 462
PspFI CCCAGC 1 cut(s) 542
PspN4I GGNNCC 1 cut(s) 91
PstI CTGCAG 1 cut(s) 163
PstNI CAGNNNCTG 1 cut(s) 170
PsuI RGATCY 1 cut(s) 89
PvuII CAGCTG 1 cut(s) 209
RsaI GTAC 1 cut(s) 377
RsaNI GTAC 1 cut(s) 376
SapI GCTCTTC 1 cut(s) 36
SaqAI TTAA 3 cut(s) 363, 462, 686
SatI GCNGC 3 cut(s) 162, 270, 942
Sau3AI GATC 3 cut(s) 89, 116, 488
SchI GAGTC 1 cut(s) 970
SfaNI GCATC 2 cut(s) 482, 703
SfcI CTRYAG 1 cut(s) 159
SnaBI TACGTA 1 cut(s) 16
Sse9I AATT 6 cut(s) 46, 565, 590, 683, 822, 930
SseBI AGGCCT 1 cut(s) 262
SspMI CTAG 2 cut(s) 281, 324
StuI AGGCCT 1 cut(s) 262
StyI CCWWGG 1 cut(s) 1021
TaaI ACNGT 1 cut(s) 691
TaiI ACGT 1 cut(s) 18
TaqI TCGA 2 cut(s) 711, 1089
TasI AATT 6 cut(s) 46, 565, 590, 683, 822, 930
TfiI GAWTC 4 cut(s) 235, 371, 863, 996
Tru1I TTAA 3 cut(s) 363, 462, 686
Tru9I TTAA 3 cut(s) 363, 462, 686
TscAI CASTG 2 cut(s) 130, 171
TseFI GTSAC 1 cut(s) 445
TseI GCWGC 3 cut(s) 161, 269, 941
Tsp45I GTSAC 1 cut(s) 445
TspDTI ATGAA 6 cut(s) 17, 70, 420, 444, 888, 1055
TspRI CASTG 2 cut(s) 130, 171
Van91I CCANNNNNTGG 1 cut(s) 518
VspI ATTAAT 1 cut(s) 462
XapI RAATTY 2 cut(s) 590, 930
XceI RCATGY 1 cut(s) 1048
XmiI GTMKAC 1 cut(s) 1029
XmnI GAANNNNTTC 1 cut(s) 8
XspI CTAG 2 cut(s) 281, 324
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.