Rh4AG007400

Type 1 membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
OG0005349
Physical Location & Seq
Reverse (-)
1322026 .. 1326642
4617 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG007400.1

Sequence Viewer

Length: 867 bp
ATGGATTCGCTCGCACGCTTCGTCTGCTTCTATCTGCTCACAGTTACCTCCTTCTTCTTCTCGCAAGCTAGGGCCCAAGGTACTGCTTCCGTCTTCTTTATCGATAGCTCCACTCATCAATTTCTTCGCAGCAACGATGTCGTCAAGCCTGACTCAATGTCGCTACCGGAATTCAGTGCTGCCGTGTCTGTCTTGCTTGGATTTGCGCCGCCTGCTTTACTCTCAGCTGCTGGTTCATCTAAGTTAAATGAGGTTCTTGTGCCCAATCCATTTAATAGACCTCGCGCTGTTTTCGTGCTGGAAGTCAGAGGAATTGCTGATCCTACTCTTGTTGTCAAACAAAATTCCATGTTTAAAAGTGCTTATGAAACCAAGATTGACCTTGGCTTGAAGAAAGCTGAGATTGAGCTTCCTGATGAAAGTGAAGTATCTGTGTTTTCTTTGGATGAGCAATCGGCAGACTATAATGACAATGAAATCAGCAATTTTGCCTCTTGGATGGGCGGATCATATGTTCCTGATACATTGGAAGCGCTAAACGGAGAGTTGGCCATCCCCTTGGCCAATGGTGATCAGTTGAAGCTTCATATGTCCAAGGAAGCAGACAGGAAATTCATTACTAGCCTTTTGGTGCTTATCCGCAATTTTAGAAGGGCAATGGAGTTGCATGAAGATTTGTTGCATAGTATCCACAGTCCAGCTGAGCTATTAACAGGCAGTTTTGATGGCATCAAGGTTTTAGAAGAGCAGTATGGATCTGACGGTGTTGCTCAACATGGAATGGAAGTGCTAGTTGCTGTAATGACTAAGATATTTGATTTACTCGAACATGCATACAAAGGTAATATACATTTTTATTTTGGGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04614 map04614
Pfam Domains
Protein Families
No domains found.

Protein Analysis

288

Amino Acids

31.84

Weight (kDa)

4.95

Isoelectric Point (pI)

33.77

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7794 PF25070 28 - 283 1.7e-115 Domain of unknown function (DUF7794)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 285
AciI CCGC 3 cut(s) 209, 504, 640
AclWI GGATC 3 cut(s) 314, 514, 763
AcoI YGGCCR 2 cut(s) 549, 561
AcsI RAATTY 3 cut(s) 170, 343, 611
AfaI GTAC 1 cut(s) 82
AfeI AGCGCT 1 cut(s) 534
AgsI TTSAA 2 cut(s) 391, 580
AhdI GACNNNNNGTC 1 cut(s) 157
AloI GAACNNNNNNTCC 2 cut(s) 498, 530
AluBI AGCT 8 cut(s) 68, 108, 227, 398, 409, 583, 701, 706
AluI AGCT 8 cut(s) 68, 108, 227, 398, 409, 583, 701, 706
AlwI GGATC 3 cut(s) 314, 514, 763
AlwNI CAGNNNCTG 1 cut(s) 230
Aor51HI AGCGCT 1 cut(s) 534
AoxI GGCC 3 cut(s) 72, 549, 561
ApaI GGGCCC 1 cut(s) 76
ApeKI GCWGC 3 cut(s) 129, 179, 227
ApoI RAATTY 3 cut(s) 170, 343, 611
AspLEI GCGC 3 cut(s) 208, 287, 535
AspS9I GGNCC 2 cut(s) 72, 73
AsuHPI GGTGA 1 cut(s) 581
BaeGI GKGCMC 2 cut(s) 76, 264
BalI TGGCCA 2 cut(s) 551, 563
BanII GRGCYC 1 cut(s) 76
BbsI GAAGAC 1 cut(s) 85
BbvI GCAGC 3 cut(s) 141, 166, 214
BccI CCATC 3 cut(s) 493, 560, 719
BceAI ACGGC 1 cut(s) 167
BcgI CGANNNNNNTGC 2 cut(s) 121, 155
BciVI GTATCC 1 cut(s) 698
BclI TGATCA 1 cut(s) 571
BfaI CTAG 3 cut(s) 69, 621, 791
BfoI RGCGCY 1 cut(s) 536
BfuI GTATCC 1 cut(s) 698
BisI GCNGC 4 cut(s) 130, 180, 209, 228
BlpI GCTNAGC 1 cut(s) 702
BlsI GCNGC 4 cut(s) 131, 181, 210, 229
BmeRI GACNNNNNGTC 1 cut(s) 157
BmgT120I GGNCC 2 cut(s) 72, 73
BmiI GGNNCC 1 cut(s) 74
BmsI GCATC 1 cut(s) 738
BpiI GAAGAC 1 cut(s) 85
Bpu1102I GCTNAGC 1 cut(s) 702
Bsa29I ATCGAT 1 cut(s) 102
BsaJI CCNNGG 4 cut(s) 76, 382, 558, 594
BsaWI WCCGGW 1 cut(s) 166
Bse3DI GCAATG 1 cut(s) 663
BseCI ATCGAT 1 cut(s) 102
BseDI CCNNGG 4 cut(s) 76, 382, 558, 594
BseGI GGATG 3 cut(s) 451, 504, 552
BseMI GCAATG 1 cut(s) 663
BseMII CTCAG 3 cut(s) 237, 390, 693
BseSI GKGCMC 2 cut(s) 76, 264
BseXI GCAGC 3 cut(s) 141, 166, 214
Bsh1236I CGCG 1 cut(s) 285
BshFI GGCC 3 cut(s) 74, 551, 563
BshVI ATCGAT 1 cut(s) 102
BsiSI CCGG 1 cut(s) 167
BsnI GGCC 3 cut(s) 74, 551, 563
Bsp120I GGGCCC 1 cut(s) 72
Bsp1286I GDGCHC 2 cut(s) 76, 264
Bsp143I GATC 4 cut(s) 319, 506, 571, 755
Bsp1720I GCTNAGC 1 cut(s) 702
BspACI CCGC 3 cut(s) 209, 504, 640
BspANI GGCC 3 cut(s) 74, 551, 563
BspCNI CTCAG 3 cut(s) 236, 391, 694
BspDI ATCGAT 1 cut(s) 102
BspFNI CGCG 1 cut(s) 285
BspLI GGNNCC 1 cut(s) 74
BspPI GGATC 3 cut(s) 314, 514, 763
BspQI GCTCTTC 1 cut(s) 738
BsrDI GCAATG 1 cut(s) 663
BssECI CCNNGG 4 cut(s) 76, 382, 558, 594
BssMI GATC 4 cut(s) 319, 506, 571, 755
BssT1I CCWWGG 4 cut(s) 76, 382, 558, 594
Bst4CI ACNGT 3 cut(s) 43, 695, 764
Bst6I CTCTTC 1 cut(s) 738
BstC8I GCNNGC 4 cut(s) 12, 16, 66, 213
BstDEI CTNAG 5 cut(s) 223, 240, 399, 702, 807
BstF5I GGATG 3 cut(s) 451, 504, 552
BstFNI CGCG 1 cut(s) 285
BstH2I RGCGCY 1 cut(s) 536
BstHHI GCGC 3 cut(s) 208, 287, 535
BstKTI GATC 4 cut(s) 322, 509, 574, 758
BstMBI GATC 4 cut(s) 319, 506, 571, 755
BstMWI GCNNNNNNNGC 2 cut(s) 24, 212
BstNSI RCATGY 1 cut(s) 833
BstSLI GKGCMC 2 cut(s) 76, 264
BstUI CGCG 1 cut(s) 285
BstV1I GCAGC 3 cut(s) 141, 166, 214
BstV2I GAAGAC 1 cut(s) 85
BstX2I RGATCY 1 cut(s) 755
BstXI CCANNNNNNTGG 1 cut(s) 559
BstYI RGATCY 1 cut(s) 755
Bsu15I ATCGAT 1 cut(s) 102
BsuI GTATCC 1 cut(s) 698
BsuRI GGCC 3 cut(s) 74, 551, 563
BsuTUI ATCGAT 1 cut(s) 102
BtsCI GGATG 3 cut(s) 451, 504, 552
BtsIMutI CAGTG 1 cut(s) 181
Cac8I GCNNGC 4 cut(s) 12, 16, 66, 213
CaiI CAGNNNCTG 1 cut(s) 230
CfoI GCGC 3 cut(s) 208, 287, 535
Cfr13I GGNCC 2 cut(s) 72, 73
ClaI ATCGAT 1 cut(s) 102
Csp6I GTAC 1 cut(s) 81
CviAII CATG 4 cut(s) 349, 668, 776, 830
CviQI GTAC 1 cut(s) 81
DdeI CTNAG 5 cut(s) 223, 240, 399, 702, 807
DpnI GATC 4 cut(s) 321, 508, 573, 757
DpnII GATC 4 cut(s) 319, 506, 571, 755
DraI TTTAAA 1 cut(s) 355
DriI GACNNNNNGTC 1 cut(s) 157
EaeI YGGCCR 2 cut(s) 549, 561
Eam1104I CTCTTC 1 cut(s) 738
Eam1105I GACNNNNNGTC 1 cut(s) 157
EarI CTCTTC 1 cut(s) 738
EciI GGCGGA 1 cut(s) 519
Eco130I CCWWGG 4 cut(s) 76, 382, 558, 594
Eco24I GRGCYC 1 cut(s) 76
Eco47III AGCGCT 1 cut(s) 534
EcoO109I RGGNCCY 1 cut(s) 72
EcoRI GAATTC 1 cut(s) 170
EcoT14I CCWWGG 4 cut(s) 76, 382, 558, 594
EcoT22I ATGCAT 1 cut(s) 835
EcoT38I GRGCYC 1 cut(s) 76
ErhI CCWWGG 4 cut(s) 76, 382, 558, 594
FaeI CATG 4 cut(s) 352, 671, 779, 833
FatI CATG 4 cut(s) 348, 667, 775, 829
FauNDI CATATG 2 cut(s) 511, 588
FbaI TGATCA 1 cut(s) 571
Fnu4HI GCNGC 4 cut(s) 130, 180, 209, 228
FokI GGATG 3 cut(s) 458, 511, 539
FriOI GRGCYC 1 cut(s) 76
Fsp4HI GCNGC 4 cut(s) 130, 180, 209, 228
FspBI CTAG 3 cut(s) 69, 621, 791
GlaI GCGC 3 cut(s) 207, 286, 534
GluI GCNGC 4 cut(s) 130, 180, 209, 228
HaeII RGCGCY 1 cut(s) 536
HaeIII GGCC 3 cut(s) 74, 551, 563
HapII CCGG 1 cut(s) 167
HhaI GCGC 3 cut(s) 208, 287, 535
Hin1II CATG 4 cut(s) 352, 671, 779, 833
Hin6I GCGC 3 cut(s) 206, 285, 533
HinP1I GCGC 3 cut(s) 206, 285, 533
HindIII AAGCTT 1 cut(s) 581
HinfI GANTC 2 cut(s) 5, 152
HpaII CCGG 1 cut(s) 167
HphI GGTGA 1 cut(s) 581
Hpy188I TCNGA 2 cut(s) 308, 760
Hpy188III TCNNGA 2 cut(s) 413, 518
HpyAV CCTTC 2 cut(s) 61, 645
HpyCH4III ACNGT 3 cut(s) 43, 695, 764
HpyCH4V TGCA 3 cut(s) 667, 682, 833
HpyF10VI GCNNNNNNNGC 2 cut(s) 24, 212
HpyF3I CTNAG 5 cut(s) 223, 240, 399, 702, 807
Hsp92II CATG 4 cut(s) 352, 671, 779, 833
HspAI GCGC 3 cut(s) 206, 285, 533
Ksp22I TGATCA 1 cut(s) 571
Kzo9I GATC 4 cut(s) 319, 506, 571, 755
LguI GCTCTTC 1 cut(s) 738
LmnI GCTCC 1 cut(s) 113
Lsp1109I GCAGC 3 cut(s) 141, 166, 214
LweI GCATC 1 cut(s) 738
MaeI CTAG 3 cut(s) 69, 621, 791
MaeIII GTNAC 1 cut(s) 43
MalI GATC 4 cut(s) 321, 508, 573, 757
MboI GATC 4 cut(s) 319, 506, 571, 755
MboII GAAGA 7 cut(s) 46, 49, 85, 116, 403, 683, 755
MflI RGATCY 1 cut(s) 755
MhlI GDGCHC 2 cut(s) 76, 264
MlsI TGGCCA 2 cut(s) 551, 563
MluCI AATT 7 cut(s) 119, 170, 312, 343, 484, 611, 643
MluNI TGGCCA 2 cut(s) 551, 563
MlyI GAGTC 1 cut(s) 146
MnlI CCTC 5 cut(s) 58, 244, 291, 302, 502
Mox20I TGGCCA 2 cut(s) 551, 563
Mph1103I ATGCAT 1 cut(s) 835
MscI TGGCCA 2 cut(s) 551, 563
MseI TTAA 4 cut(s) 245, 273, 354, 710
Msp20I TGGCCA 2 cut(s) 551, 563
MspA1I CMGCKG 2 cut(s) 227, 701
MspI CCGG 1 cut(s) 167
MvnI CGCG 1 cut(s) 285
MwoI GCNNNNNNNGC 2 cut(s) 24, 212
NdeI CATATG 2 cut(s) 511, 588
NdeII GATC 4 cut(s) 319, 506, 571, 755
NlaIII CATG 4 cut(s) 352, 671, 779, 833
NlaIV GGNNCC 1 cut(s) 74
NsiI ATGCAT 1 cut(s) 835
NspI RCATGY 1 cut(s) 833
PciSI GCTCTTC 1 cut(s) 738
PcsI WCGNNNNNNNCGW 1 cut(s) 18
PfeI GAWTC 1 cut(s) 5
PkrI GCNGC 4 cut(s) 131, 181, 210, 229
PleI GAGTC 1 cut(s) 146
PpsI GAGTC 1 cut(s) 146
PspN4I GGNNCC 1 cut(s) 74
PspOMI GGGCCC 1 cut(s) 72
PspPI GGNCC 2 cut(s) 72, 73
PstNI CAGNNNCTG 1 cut(s) 230
PsuI RGATCY 1 cut(s) 755
PvuII CAGCTG 2 cut(s) 227, 701
RsaI GTAC 1 cut(s) 82
RsaNI GTAC 1 cut(s) 81
SapI GCTCTTC 1 cut(s) 738
SaqAI TTAA 4 cut(s) 245, 273, 354, 710
SatI GCNGC 4 cut(s) 130, 180, 209, 228
Sau3AI GATC 4 cut(s) 319, 506, 571, 755
Sau96I GGNCC 2 cut(s) 72, 73
SchI GAGTC 1 cut(s) 146
SduI GDGCHC 2 cut(s) 76, 264
SfaNI GCATC 1 cut(s) 738
Sse9I AATT 7 cut(s) 119, 170, 312, 343, 484, 611, 643
SsiI CCGC 3 cut(s) 209, 504, 640
SspMI CTAG 3 cut(s) 69, 621, 791
StyI CCWWGG 4 cut(s) 76, 382, 558, 594
TaaI ACNGT 3 cut(s) 43, 695, 764
TaqI TCGA 2 cut(s) 102, 825
TasI AATT 7 cut(s) 119, 170, 312, 343, 484, 611, 643
TauI GCSGC 1 cut(s) 211
TfiI GAWTC 1 cut(s) 5
Tru1I TTAA 4 cut(s) 245, 273, 354, 710
Tru9I TTAA 4 cut(s) 245, 273, 354, 710
TscAI CASTG 1 cut(s) 181
TseI GCWGC 3 cut(s) 129, 179, 227
TspDTI ATGAA 7 cut(s) 225, 381, 432, 489, 575, 604, 684
TspGWI ACGGA 2 cut(s) 79, 555
TspRI CASTG 1 cut(s) 181
XapI RAATTY 3 cut(s) 170, 343, 611
XceI RCATGY 1 cut(s) 833
XspI CTAG 3 cut(s) 69, 621, 791
Zsp2I ATGCAT 1 cut(s) 835
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.