RchiOBHm_Chr4g0385911

Type 1 membrane protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
4
OG0005349
Physical Location & Seq
Reverse (-)
1548597 .. 1552926
4330 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ35931

Sequence Viewer

Length: 1122 bp
ATGGATTCGCTCGCACGATTCGTCTGCTTCTATCTGCTCACAGTTTCCTCCTTCTTCTTCTTCTCGCAAGCTAGGGCCCAAGGTACTGCTTCCGTCTTCTTTATCGATAGCTCCACTCATCAATTTCTTCGCAGCAACGATGTAGTCGAGCCTGACTCAATGTCGCTGCCGGAAGTCAGTGCCGCCGTGTCTGTCTTGCTTGGATTTGCGCCGCCTGCTTCACTCTCAGCTGCTGGTTCATCTAAGTTAAATGAGGTTCTTGAGCCCAATCCATTTAATAGACCTCGCGCTGTTTTCGTGCTCGAAGTCAGAGGAATTGCTGATCCTACTCTTGTTGTCAAACAAAATTCCATGTTTAAAAGTGCTTATGAAACCAAGATTGACCTTGGCTTGAAGAAAGTTGAGATTGAGCTTCCTGATGAAAGTGAAGTATCTGTGTTTTCTTTGGATGAGCAATCAGCAGACTATAATGACAATGAAATCAGCAATTTTGCCTCTTGGATGGGCGGATCATATGTTCCTGATACATTGGAAGCGCTAAACGGAGAGTTGGCCATCCCCTTGGCCAATGGTGATCAGTTGAAGCTTCATATGTCCAAGGAAGCAGACAGAAAATTCATTACTAGCCATTTGGCGCTCATCCACAATTTTAGAAGGGCAATGGAGTTGCATGAAGATTTGTTGCATAGTATCCACAGCCCAGCTGAGCTATTAACAGGCAGTTTTGATGGCATCAAGGTTTTAGAAGAGCAGTATGGATCTGACGGTGTTGCTCAACATGGAATGGAAGTGCTAGTTGCTGTAATGACTAAGATATTTGATTTACTCGAACATGCATACAAAGGTCAAATTGTTGGAGCTATCCTCTTTGATGGAGTAGCACCTGTTGAATCAGGGAAGATGTTGAATGTGGTGTTTACCAGTCGACCATCTGCTCGTTGGCTGGCAGAAACAAAGACCCCAACAAATACAACTGTTGTGGAAGTGCTATTGGTTAGAAAAACAATTGCTTGGATCACAGGAATTATCCTTCTCATTGCAACTCTCTTAGGGGTATACTTCCTTCTGAATATGCCAATCACCAGGGATACGTTACTGTACTCTAATGTCAAGCTGGACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko04614 map04614
Pfam Domains
Protein Families
No domains found.

Protein Analysis

373

Amino Acids

41.05

Weight (kDa)

4.99

Isoelectric Point (pI)

33.9

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF7794 PF25070 29 - 291 1.5e-119 Domain of unknown function (DUF7794)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccI GTMKAC 2 cut(s) 925, 1056
AccII CGCG 1 cut(s) 288
AciI CCGC 3 cut(s) 183, 212, 507
AclWI GGATC 4 cut(s) 317, 517, 766, 1022
AcoI YGGCCR 2 cut(s) 552, 564
AcsI RAATTY 2 cut(s) 346, 614
AfaI GTAC 2 cut(s) 85, 1100
AfeI AGCGCT 1 cut(s) 537
AgsI TTSAA 4 cut(s) 394, 583, 890, 907
AhdI GACNNNNNGTC 1 cut(s) 160
AjnI CCWGG 1 cut(s) 1082
AloI GAACNNNNNNTCC 2 cut(s) 501, 533
AluBI AGCT 9 cut(s) 71, 111, 230, 412, 586, 704, 709, 860, 1114
AluI AGCT 9 cut(s) 71, 111, 230, 412, 586, 704, 709, 860, 1114
Alw21I GWGCWC 1 cut(s) 303
AlwI GGATC 4 cut(s) 317, 517, 766, 1022
AlwNI CAGNNNCTG 1 cut(s) 233
Aor51HI AGCGCT 1 cut(s) 537
AoxI GGCC 3 cut(s) 75, 552, 564
ApaI GGGCCC 1 cut(s) 79
ApeKI GCWGC 3 cut(s) 132, 166, 230
ApoI RAATTY 2 cut(s) 346, 614
AspLEI GCGC 4 cut(s) 211, 290, 538, 637
AspS9I GGNCC 2 cut(s) 75, 76
AsuHPI GGTGA 2 cut(s) 584, 1072
BaeGI GKGCMC 1 cut(s) 79
BalI TGGCCA 2 cut(s) 554, 566
BanII GRGCYC 2 cut(s) 79, 267
BarI GAAGNNNNNNTAC 2 cut(s) 1047, 1079
BbsI GAAGAC 1 cut(s) 88
Bbv12I GWGCWC 1 cut(s) 303
BbvI GCAGC 3 cut(s) 144, 153, 217
BccI CCATC 5 cut(s) 496, 563, 722, 866, 937
BceAI ACGGC 1 cut(s) 170
BcgI CGANNNNNNTGC 2 cut(s) 6, 40
BciT130I CCWGG 1 cut(s) 1084
BciVI GTATCC 2 cut(s) 701, 1081
BclI TGATCA 1 cut(s) 574
BfaI CTAG 4 cut(s) 72, 624, 794, 1120
BfoI RGCGCY 2 cut(s) 539, 638
BfuI GTATCC 2 cut(s) 701, 1081
BisI GCNGC 5 cut(s) 133, 167, 183, 212, 231
BlpI GCTNAGC 1 cut(s) 705
BlsI GCNGC 5 cut(s) 134, 168, 184, 213, 232
Bme1390I CCNGG 1 cut(s) 1084
BmeRI GACNNNNNGTC 1 cut(s) 160
BmgT120I GGNCC 2 cut(s) 75, 76
BmiI GGNNCC 1 cut(s) 77
BmrFI CCNGG 1 cut(s) 1084
BmsI GCATC 1 cut(s) 741
BpiI GAAGAC 1 cut(s) 88
BplI GAGNNNNNCTC 4 cut(s) 140, 172, 849, 881
Bpu1102I GCTNAGC 1 cut(s) 705
BpuEI CTTGAG 1 cut(s) 281
Bsa29I ATCGAT 1 cut(s) 105
BsaJI CCNNGG 5 cut(s) 79, 385, 561, 597, 1083
Bse1I ACTGG 1 cut(s) 921
Bse3DI GCAATG 2 cut(s) 666, 1035
BseBI CCWGG 1 cut(s) 1084
BseCI ATCGAT 1 cut(s) 105
BseDI CCNNGG 5 cut(s) 79, 385, 561, 597, 1083
BseGI GGATG 4 cut(s) 454, 507, 555, 639
BseMI GCAATG 2 cut(s) 666, 1035
BseMII CTCAG 2 cut(s) 240, 696
BseNI ACTGG 1 cut(s) 921
BseSI GKGCMC 1 cut(s) 79
BseXI GCAGC 3 cut(s) 144, 153, 217
BseYI CCCAGC 1 cut(s) 700
Bsh1236I CGCG 1 cut(s) 288
BshFI GGCC 3 cut(s) 77, 554, 566
BshVI ATCGAT 1 cut(s) 105
BsiHKAI GWGCWC 1 cut(s) 303
BsiSI CCGG 1 cut(s) 170
BsnI GGCC 3 cut(s) 77, 554, 566
Bsp120I GGGCCC 1 cut(s) 75
Bsp1286I GDGCHC 3 cut(s) 79, 267, 303
Bsp143I GATC 5 cut(s) 322, 509, 574, 758, 1014
Bsp1720I GCTNAGC 1 cut(s) 705
BspACI CCGC 3 cut(s) 183, 212, 507
BspANI GGCC 3 cut(s) 77, 554, 566
BspCNI CTCAG 2 cut(s) 239, 697
BspDI ATCGAT 1 cut(s) 105
BspFNI CGCG 1 cut(s) 288
BspLI GGNNCC 1 cut(s) 77
BspPI GGATC 4 cut(s) 317, 517, 766, 1022
BspQI GCTCTTC 1 cut(s) 741
BsrDI GCAATG 2 cut(s) 666, 1035
BsrI ACTGG 1 cut(s) 921
BssECI CCNNGG 5 cut(s) 79, 385, 561, 597, 1083
BssMI GATC 5 cut(s) 322, 509, 574, 758, 1014
BssNAI GTATAC 1 cut(s) 1057
BssT1I CCWWGG 4 cut(s) 79, 385, 561, 597
Bst1107I GTATAC 1 cut(s) 1057
Bst2UI CCWGG 1 cut(s) 1084
Bst4CI ACNGT 4 cut(s) 43, 767, 976, 1098
Bst6I CTCTTC 1 cut(s) 741
BstC8I GCNNGC 4 cut(s) 12, 69, 216, 945
BstDEI CTNAG 5 cut(s) 226, 243, 705, 810, 1048
BstF5I GGATG 4 cut(s) 454, 507, 555, 639
BstFNI CGCG 1 cut(s) 288
BstH2I RGCGCY 2 cut(s) 539, 638
BstHHI GCGC 4 cut(s) 211, 290, 538, 637
BstKTI GATC 5 cut(s) 325, 512, 577, 761, 1017
BstMBI GATC 5 cut(s) 322, 509, 574, 758, 1014
BstMWI GCNNNNNNNGC 1 cut(s) 215
BstNI CCWGG 1 cut(s) 1084
BstNSI RCATGY 1 cut(s) 836
BstSCI CCNGG 1 cut(s) 1082
BstSLI GKGCMC 1 cut(s) 79
BstUI CGCG 1 cut(s) 288
BstV1I GCAGC 3 cut(s) 144, 153, 217
BstV2I GAAGAC 1 cut(s) 88
BstX2I RGATCY 1 cut(s) 758
BstXI CCANNNNNNTGG 1 cut(s) 562
BstYI RGATCY 1 cut(s) 758
BstZ17I GTATAC 1 cut(s) 1057
Bsu15I ATCGAT 1 cut(s) 105
BsuI GTATCC 2 cut(s) 701, 1081
BsuRI GGCC 3 cut(s) 77, 554, 566
BsuTUI ATCGAT 1 cut(s) 105
BtsCI GGATG 4 cut(s) 454, 507, 555, 639
BtsIMutI CAGTG 1 cut(s) 184
Cac8I GCNNGC 4 cut(s) 12, 69, 216, 945
CaiI CAGNNNCTG 1 cut(s) 233
CfoI GCGC 4 cut(s) 211, 290, 538, 637
Cfr13I GGNCC 2 cut(s) 75, 76
ClaI ATCGAT 1 cut(s) 105
Csp6I GTAC 2 cut(s) 84, 1099
CspCI CAANNNNNGTGG 2 cut(s) 960, 995
CviAII CATG 4 cut(s) 352, 671, 779, 833
CviQI GTAC 2 cut(s) 84, 1099
DdeI CTNAG 5 cut(s) 226, 243, 705, 810, 1048
DpnI GATC 5 cut(s) 324, 511, 576, 760, 1016
DpnII GATC 5 cut(s) 322, 509, 574, 758, 1014
DraI TTTAAA 1 cut(s) 358
DriI GACNNNNNGTC 1 cut(s) 160
EaeI YGGCCR 2 cut(s) 552, 564
Eam1104I CTCTTC 1 cut(s) 741
Eam1105I GACNNNNNGTC 1 cut(s) 160
EarI CTCTTC 1 cut(s) 741
EciI GGCGGA 1 cut(s) 522
Eco130I CCWWGG 4 cut(s) 79, 385, 561, 597
Eco24I GRGCYC 2 cut(s) 79, 267
Eco47III AGCGCT 1 cut(s) 537
EcoO109I RGGNCCY 1 cut(s) 75
EcoRII CCWGG 1 cut(s) 1082
EcoT14I CCWWGG 4 cut(s) 79, 385, 561, 597
EcoT22I ATGCAT 1 cut(s) 838
EcoT38I GRGCYC 2 cut(s) 79, 267
ErhI CCWWGG 4 cut(s) 79, 385, 561, 597
FaeI CATG 4 cut(s) 355, 674, 782, 836
FatI CATG 4 cut(s) 351, 670, 778, 832
FauNDI CATATG 2 cut(s) 514, 591
FbaI TGATCA 1 cut(s) 574
FblI GTMKAC 2 cut(s) 925, 1056
Fnu4HI GCNGC 5 cut(s) 133, 167, 183, 212, 231
FokI GGATG 4 cut(s) 461, 514, 542, 626
FriOI GRGCYC 2 cut(s) 79, 267
Fsp4HI GCNGC 5 cut(s) 133, 167, 183, 212, 231
FspBI CTAG 4 cut(s) 72, 624, 794, 1120
GlaI GCGC 4 cut(s) 210, 289, 537, 636
GluI GCNGC 5 cut(s) 133, 167, 183, 212, 231
GsaI CCCAGC 1 cut(s) 704
HaeII RGCGCY 2 cut(s) 539, 638
HaeIII GGCC 3 cut(s) 77, 554, 566
HapII CCGG 1 cut(s) 170
HhaI GCGC 4 cut(s) 211, 290, 538, 637
Hin1II CATG 4 cut(s) 355, 674, 782, 836
Hin6I GCGC 4 cut(s) 209, 288, 536, 635
HinP1I GCGC 4 cut(s) 209, 288, 536, 635
HincII GTYRAC 1 cut(s) 926
HindII GTYRAC 1 cut(s) 926
HindIII AAGCTT 1 cut(s) 584
HinfI GANTC 4 cut(s) 5, 18, 155, 890
HpaII CCGG 1 cut(s) 170
HphI GGTGA 2 cut(s) 584, 1072
Hpy166II GTNNAC 3 cut(s) 918, 926, 1057
Hpy188I TCNGA 3 cut(s) 311, 763, 1068
Hpy188III TCNNGA 3 cut(s) 260, 416, 521
Hpy8I GTNNAC 3 cut(s) 918, 926, 1057
HpyAV CCTTC 4 cut(s) 61, 648, 1040, 1073
HpyCH4III ACNGT 4 cut(s) 43, 767, 976, 1098
HpyCH4IV ACGT 1 cut(s) 1091
HpyCH4V TGCA 4 cut(s) 670, 685, 836, 1040
HpyF10VI GCNNNNNNNGC 1 cut(s) 215
HpyF3I CTNAG 5 cut(s) 226, 243, 705, 810, 1048
HpySE526I ACGT 1 cut(s) 1091
Hsp92II CATG 4 cut(s) 355, 674, 782, 836
HspAI GCGC 4 cut(s) 209, 288, 536, 635
Ksp22I TGATCA 1 cut(s) 574
Kzo9I GATC 5 cut(s) 322, 509, 574, 758, 1014
LguI GCTCTTC 1 cut(s) 741
LmnI GCTCC 2 cut(s) 116, 857
Lsp1109I GCAGC 3 cut(s) 144, 153, 217
LweI GCATC 1 cut(s) 741
MaeI CTAG 4 cut(s) 72, 624, 794, 1120
MaeII ACGT 1 cut(s) 1091
MaeIII GTNAC 1 cut(s) 1092
MalI GATC 5 cut(s) 324, 511, 576, 760, 1016
MboI GATC 5 cut(s) 322, 509, 574, 758, 1014
MboII GAAGA 9 cut(s) 46, 49, 52, 88, 119, 406, 686, 758, 910
MfeI CAATTG 1 cut(s) 1005
MflI RGATCY 1 cut(s) 758
MhlI GDGCHC 3 cut(s) 79, 267, 303
MlsI TGGCCA 2 cut(s) 554, 566
MluCI AATT 9 cut(s) 122, 315, 346, 487, 614, 646, 849, 1005, 1023
MluNI TGGCCA 2 cut(s) 554, 566
MlyI GAGTC 1 cut(s) 149
MmeI TCCRAC 1 cut(s) 835
MnlI CCTC 6 cut(s) 58, 247, 294, 305, 505, 875
Mox20I TGGCCA 2 cut(s) 554, 566
Mph1103I ATGCAT 1 cut(s) 838
MscI TGGCCA 2 cut(s) 554, 566
MseI TTAA 4 cut(s) 248, 276, 357, 713
Msp20I TGGCCA 2 cut(s) 554, 566
MspA1I CMGCKG 2 cut(s) 230, 704
MspI CCGG 1 cut(s) 170
MspR9I CCNGG 1 cut(s) 1084
MunI CAATTG 1 cut(s) 1005
MvaI CCWGG 1 cut(s) 1084
MvnI CGCG 1 cut(s) 288
MwoI GCNNNNNNNGC 1 cut(s) 215
NdeI CATATG 2 cut(s) 514, 591
NdeII GATC 5 cut(s) 322, 509, 574, 758, 1014
NlaIII CATG 4 cut(s) 355, 674, 782, 836
NlaIV GGNNCC 1 cut(s) 77
NsiI ATGCAT 1 cut(s) 838
NspI RCATGY 1 cut(s) 836
PciSI GCTCTTC 1 cut(s) 741
PcsI WCGNNNNNNNCGW 2 cut(s) 18, 144
PfeI GAWTC 3 cut(s) 5, 18, 890
PkrI GCNGC 5 cut(s) 134, 168, 184, 213, 232
PleI GAGTC 1 cut(s) 149
PpsI GAGTC 1 cut(s) 149
Psp6I CCWGG 1 cut(s) 1082
PspFI CCCAGC 1 cut(s) 700
PspGI CCWGG 1 cut(s) 1082
PspN4I GGNNCC 1 cut(s) 77
PspOMI GGGCCC 1 cut(s) 75
PspPI GGNCC 2 cut(s) 75, 76
PstNI CAGNNNCTG 1 cut(s) 233
PsuI RGATCY 1 cut(s) 758
PvuII CAGCTG 2 cut(s) 230, 704
RsaI GTAC 2 cut(s) 85, 1100
RsaNI GTAC 2 cut(s) 84, 1099
SalI GTCGAC 1 cut(s) 924
SapI GCTCTTC 1 cut(s) 741
SaqAI TTAA 4 cut(s) 248, 276, 357, 713
SatI GCNGC 5 cut(s) 133, 167, 183, 212, 231
Sau3AI GATC 5 cut(s) 322, 509, 574, 758, 1014
Sau96I GGNCC 2 cut(s) 75, 76
SchI GAGTC 1 cut(s) 149
ScrFI CCNGG 1 cut(s) 1084
SduI GDGCHC 3 cut(s) 79, 267, 303
SfaNI GCATC 1 cut(s) 741
SmlI CTYRAG 1 cut(s) 260
SmoI CTYRAG 1 cut(s) 260
Sse9I AATT 9 cut(s) 122, 315, 346, 487, 614, 646, 849, 1005, 1023
SsiI CCGC 3 cut(s) 183, 212, 507
SspMI CTAG 4 cut(s) 72, 624, 794, 1120
StyD4I CCNGG 1 cut(s) 1082
StyI CCWWGG 4 cut(s) 79, 385, 561, 597
TaaI ACNGT 4 cut(s) 43, 767, 976, 1098
TaiI ACGT 1 cut(s) 1094
TaqI TCGA 5 cut(s) 105, 147, 303, 828, 925
TasI AATT 9 cut(s) 122, 315, 346, 487, 614, 646, 849, 1005, 1023
TatI WGTACW 1 cut(s) 1098
TauI GCSGC 2 cut(s) 185, 214
TfiI GAWTC 3 cut(s) 5, 18, 890
Tru1I TTAA 4 cut(s) 248, 276, 357, 713
Tru9I TTAA 4 cut(s) 248, 276, 357, 713
TscAI CASTG 1 cut(s) 184
TseI GCWGC 3 cut(s) 132, 166, 230
TspDTI ATGAA 7 cut(s) 228, 384, 435, 492, 578, 607, 687
TspGWI ACGGA 2 cut(s) 82, 558
TspRI CASTG 1 cut(s) 184
XapI RAATTY 2 cut(s) 346, 614
XceI RCATGY 1 cut(s) 836
XcmI CCANNNNNNNNNTGG 1 cut(s) 936
XmiI GTMKAC 2 cut(s) 925, 1056
XspI CTAG 4 cut(s) 72, 624, 794, 1120
Zsp2I ATGCAT 1 cut(s) 838
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.