Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr4

Orthogroup ID

OG0005349

Physical Location & Seq

Genomic Coordinates Reverse (-)

463601 .. 471646

Gene Structure 8046 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom04g00500.5

Sequence Viewer

CDS Protein Promoter (2k)

Length: 771 bp

ATGTTCAGCAGTGCCTATAGTTCCAAGATTGACCTTCGCTCAAGCAAAGCTGACATCGAGCTTCCAGATGAAGGTGAAGTTTCTGTGTTTTCTTTGGATGAACAATCCACAGATTATACTGACAAAGACATTGGAGATTTTGCAGCTTGGATGAGTGGTTCATATGTTGTTGACACATTAGAACCACAAAATGGAGAGTTGAGCATCCCTTTGGCCAATGGCAACAACTTGAAGCTTCATATGTCAAAGGAATCAGATAGGATATTCACAACTAGCCTTCTGTCTCTCATCCGCAACTTTAAAAGGGCACAAGAGATGCATCAAGATTTGTCACACAACATCCATAGCCCAGCTGAGTTATTAACAGGCCGTTTTGATGGAATCAAGGTTTTGCAAGAGCAGTACGGAACTGATGGAGGTGCTCAACATGGAGTGGAGCTACTGCTTGCTACACTGTCCAAGATATTTGATTCACTTGAAAATGCATACAAAGGTCAAATTGTTGGAGCTATCCTTTTCAATGGAGTTGCACCTGTGGAGTCGGGAAAGATGTTGAATGTGATGTATACTAGTCGATCATATGCTCGTTTGTTGGCTGAAAAAGAAGGCCTGAATAATACAAAAATTGTGCAAGTGTTATTGGTTAGGCGTACACTTGCTTGGATCACAGGAATTATTCTTATCATTTCAACTCTTTTGGGGGTGTGCTTCCTTGTGAATATGCCAGTCACCAGGGATACGTTACTCTACTCTAACGTCAAGCTGGACTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

ko04614 map04614

Pfam Domains

Protein Families

No domains found.

Protein Analysis

257

Amino Acids

28.31

Weight (kDa)

5.17

Isoelectric Point (pI)

39.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0005349)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT3G24160
fragaria_vesca	FvH4_4g00480 FvH4_4g00480 FvH4_4g00480 FvH4_4g00480
malus_domestica	MD04G1005200.v1.1 MD04G1005300.v1.1 MD07G1287300.v1.1
prunus_persica	Prupe.1G005000_v2.0.a1 Prupe.1G005000_v2.0.a1 Prupe.1G005000_v2.0.a1 Prupe.1G005000_v2.0.a1 Prupe.1G005000_v2.0.a1
pyrus_communis	pycom04g00500
rosa_chinensis	RchiOBHm_Chr4g0385791 RchiOBHm_Chr4g0385911
rosa_laevigata	RLG00000010202
rosa_multiflora	Rmu_co8333427.1_g000001 Rmu_sc0007400.1_g000009 Rmu_sc0008728.1_g000001 Rmu_sc0024454.1_g000002
rosa_roxburghii	Rroxscaffold_5G00333510
rosa_rugosa	Rorug03G0302700 Rorug03G0302800
rosa_samantha	Rh4AG007400 Rh4BG005200 Rh4CG008000 Rh4DG006900
rosa_wichuraiana	Rw4G000330

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccB7I	CCANNNNNTGG	1 cut(s)	191
AccI	GTMKAC	1 cut(s)	566
AciI	CCGC	1 cut(s)	292
AclWI	GGATC	1 cut(s)	671
AcoI	YGGCCR	1 cut(s)	213
AfaI	GTAC	2 cut(s)	404, 652
AfiI	CCNNNNNNNGG	2 cut(s)	71, 191
AgsI	TTSAA	5 cut(s)	232, 479, 520, 556, 690
AhlI	ACTAGT	1 cut(s)	569
AjnI	CCWGG	1 cut(s)	731
AloI	GAACNNNNNNTCC	2 cut(s)	142, 174
AluBI	AGCT	8 cut(s)	50, 61, 146, 235, 353, 439, 509, 763
AluI	AGCT	8 cut(s)	50, 61, 146, 235, 353, 439, 509, 763
Alw21I	GWGCWC	1 cut(s)	424
Alw26I	GTCTC	1 cut(s)	288
AlwI	GGATC	1 cut(s)	671
AoxI	GGCC	3 cut(s)	213, 367, 607
ApeKI	GCWGC	1 cut(s)	143
AsuHPI	GGTGA	2 cut(s)	86, 721
BaeGI	GKGCMC	1 cut(s)	310
BalI	TGGCCA	1 cut(s)	215
Bbv12I	GWGCWC	1 cut(s)	424
BbvI	GCAGC	1 cut(s)	155
BccI	CCATC	2 cut(s)	371, 407
BceAI	ACGGC	1 cut(s)	354
BciT130I	CCWGG	1 cut(s)	733
BciVI	GTATCC	1 cut(s)	730
BcoDI	GTCTC	1 cut(s)	288
BcuI	ACTAGT	1 cut(s)	569
BfaI	CTAG	2 cut(s)	273, 570
BfmI	CTRYAG	1 cut(s)	16
BfuI	GTATCC	1 cut(s)	730
BisI	GCNGC	1 cut(s)	144
BlsI	GCNGC	1 cut(s)	145
Bme1390I	CCNGG	1 cut(s)	733
BmrFI	CCNGG	1 cut(s)	733
BmsI	GCATC	3 cut(s)	213, 306, 328
BpuEI	CTTGAG	1 cut(s)	25
BsaJI	CCNNGG	1 cut(s)	732
Bsc4I	CCNNNNNNNGG	2 cut(s)	71, 191
Bse1I	ACTGG	1 cut(s)	725
BseBI	CCWGG	1 cut(s)	733
BseDI	CCNNGG	1 cut(s)	732
BseGI	GGATG	5 cut(s)	103, 156, 204, 288, 339
BseLI	CCNNNNNNNGG	2 cut(s)	71, 191
BseMII	CTCAG	1 cut(s)	345
BseNI	ACTGG	1 cut(s)	725
BseSI	GKGCMC	1 cut(s)	310
BseXI	GCAGC	1 cut(s)	155
BseYI	CCCAGC	1 cut(s)	349
BshFI	GGCC	3 cut(s)	215, 369, 609
BsiHKAI	GWGCWC	1 cut(s)	424
BslI	CCNNNNNNNGG	2 cut(s)	71, 191
BsmAI	GTCTC	1 cut(s)	288
BsnI	GGCC	3 cut(s)	215, 369, 609
Bsp1286I	GDGCHC	2 cut(s)	310, 424
Bsp143I	GATC	2 cut(s)	575, 663
BspACI	CCGC	1 cut(s)	292
BspANI	GGCC	3 cut(s)	215, 369, 609
BspCNI	CTCAG	1 cut(s)	346
BspPI	GGATC	1 cut(s)	671
BsrI	ACTGG	1 cut(s)	725
BssECI	CCNNGG	1 cut(s)	732
BssMI	GATC	2 cut(s)	575, 663
BssNAI	GTATAC	1 cut(s)	567
Bst1107I	GTATAC	1 cut(s)	567
Bst2UI	CCWGG	1 cut(s)	733
Bst4CI	ACNGT	1 cut(s)	456
BstC8I	GCNNGC	1 cut(s)	447
BstDEI	CTNAG	1 cut(s)	354
BstF5I	GGATG	5 cut(s)	103, 156, 204, 288, 339
BstKTI	GATC	2 cut(s)	578, 666
BstMAI	GTCTC	1 cut(s)	288
BstMBI	GATC	2 cut(s)	575, 663
BstNI	CCWGG	1 cut(s)	733
BstSCI	CCNGG	1 cut(s)	731
BstSFI	CTRYAG	1 cut(s)	16
BstSLI	GKGCMC	1 cut(s)	310
BstV1I	GCAGC	1 cut(s)	155
BstZ17I	GTATAC	1 cut(s)	567
BsuI	GTATCC	1 cut(s)	730
BsuRI	GGCC	3 cut(s)	215, 369, 609
BtsCI	GGATG	5 cut(s)	103, 156, 204, 288, 339
BtsI	GCAGTG	1 cut(s)	16
BtsIMutI	CAGTG	2 cut(s)	16, 452
Cac8I	GCNNGC	1 cut(s)	447
Csp6I	GTAC	2 cut(s)	403, 651
CviAII	CATG	1 cut(s)	428
CviQI	GTAC	2 cut(s)	403, 651
DdeI	CTNAG	1 cut(s)	354
DpnI	GATC	2 cut(s)	577, 665
DpnII	GATC	2 cut(s)	575, 663
DraI	TTTAAA	1 cut(s)	301
EaeI	YGGCCR	1 cut(s)	213
Eco147I	AGGCCT	1 cut(s)	609
EcoRII	CCWGG	1 cut(s)	731
EcoT22I	ATGCAT	2 cut(s)	321, 487
FaeI	CATG	1 cut(s)	431
FatI	CATG	1 cut(s)	427
FauNDI	CATATG	3 cut(s)	163, 240, 580
FblI	GTMKAC	1 cut(s)	566
Fnu4HI	GCNGC	1 cut(s)	144
FokI	GGATG	5 cut(s)	110, 163, 191, 275, 326
Fsp4HI	GCNGC	1 cut(s)	144
FspBI	CTAG	2 cut(s)	273, 570
GluI	GCNGC	1 cut(s)	144
GsaI	CCCAGC	1 cut(s)	353
HaeIII	GGCC	3 cut(s)	215, 369, 609
Hin1II	CATG	1 cut(s)	431
HincII	GTYRAC	1 cut(s)	172
HindII	GTYRAC	1 cut(s)	172
HindIII	AAGCTT	1 cut(s)	233
HinfI	GANTC	4 cut(s)	251, 381, 470, 539
HphI	GGTGA	2 cut(s)	86, 721
Hpy166II	GTNNAC	3 cut(s)	172, 567, 653
Hpy188I	TCNGA	1 cut(s)	256
Hpy188III	TCNNGA	3 cut(s)	65, 323, 543
Hpy8I	GTNNAC	3 cut(s)	172, 567, 653
HpyAV	CCTTC	4 cut(s)	44, 65, 287, 599
HpyCH4III	ACNGT	1 cut(s)	456
HpyCH4IV	ACGT	2 cut(s)	740, 756
HpyCH4V	TGCA	6 cut(s)	143, 319, 394, 485, 530, 631
HpyF3I	CTNAG	1 cut(s)	354
HpySE526I	ACGT	2 cut(s)	740, 756
Hsp92II	CATG	1 cut(s)	431
Kzo9I	GATC	2 cut(s)	575, 663
LmnI	GCTCC	2 cut(s)	436, 506
Lsp1109I	GCAGC	1 cut(s)	155
LweI	GCATC	3 cut(s)	213, 306, 328
MaeI	CTAG	2 cut(s)	273, 570
MaeII	ACGT	2 cut(s)	740, 756
MaeIII	GTNAC	3 cut(s)	330, 727, 741
MalI	GATC	2 cut(s)	577, 665
MboI	GATC	2 cut(s)	575, 663
MhlI	GDGCHC	2 cut(s)	310, 424
MlsI	TGGCCA	1 cut(s)	215
MluCI	AATT	3 cut(s)	498, 624, 672
MluNI	TGGCCA	1 cut(s)	215
MlyI	GAGTC	1 cut(s)	548
MmeI	TCCRAC	1 cut(s)	484
MnlI	CCTC	1 cut(s)	410
Mox20I	TGGCCA	1 cut(s)	215
Mph1103I	ATGCAT	2 cut(s)	321, 487
MscI	TGGCCA	1 cut(s)	215
MseI	TTAA	2 cut(s)	300, 362
Msp20I	TGGCCA	1 cut(s)	215
MspA1I	CMGCKG	1 cut(s)	353
MspR9I	CCNGG	1 cut(s)	733
MvaI	CCWGG	1 cut(s)	733
NdeI	CATATG	3 cut(s)	163, 240, 580
NdeII	GATC	2 cut(s)	575, 663
NlaIII	CATG	1 cut(s)	431
NmuCI	GTSAC	2 cut(s)	330, 727
NsiI	ATGCAT	2 cut(s)	321, 487
PceI	AGGCCT	1 cut(s)	609
PfeI	GAWTC	3 cut(s)	251, 381, 470
PflMI	CCANNNNNTGG	1 cut(s)	191
PkrI	GCNGC	1 cut(s)	145
PleI	GAGTC	1 cut(s)	547
PpsI	GAGTC	1 cut(s)	547
Psp6I	CCWGG	1 cut(s)	731
PspFI	CCCAGC	1 cut(s)	349
PspGI	CCWGG	1 cut(s)	731
PvuII	CAGCTG	1 cut(s)	353
RsaI	GTAC	2 cut(s)	404, 652
RsaNI	GTAC	2 cut(s)	403, 651
SaqAI	TTAA	2 cut(s)	300, 362
SatI	GCNGC	1 cut(s)	144
Sau3AI	GATC	2 cut(s)	575, 663
SchI	GAGTC	1 cut(s)	548
ScrFI	CCNGG	1 cut(s)	733
SduI	GDGCHC	2 cut(s)	310, 424
SfaNI	GCATC	3 cut(s)	213, 306, 328
SfcI	CTRYAG	1 cut(s)	16
SmlI	CTYRAG	1 cut(s)	40
SmoI	CTYRAG	1 cut(s)	40
SpeI	ACTAGT	1 cut(s)	569
Sse9I	AATT	3 cut(s)	498, 624, 672
SseBI	AGGCCT	1 cut(s)	609
SsiI	CCGC	1 cut(s)	292
SspMI	CTAG	2 cut(s)	273, 570
StuI	AGGCCT	1 cut(s)	609
StyD4I	CCNGG	1 cut(s)	731
TaaI	ACNGT	1 cut(s)	456
TaiI	ACGT	2 cut(s)	743, 759
TaqI	TCGA	2 cut(s)	57, 574
TasI	AATT	3 cut(s)	498, 624, 672
TfiI	GAWTC	3 cut(s)	251, 381, 470
Tru1I	TTAA	2 cut(s)	300, 362
Tru9I	TTAA	2 cut(s)	300, 362
TscAI	CASTG	2 cut(s)	16, 459
TseFI	GTSAC	2 cut(s)	330, 727
TseI	GCWGC	1 cut(s)	143
Tsp45I	GTSAC	2 cut(s)	330, 727
TspDTI	ATGAA	4 cut(s)	84, 114, 150, 227
TspGWI	ACGGA	1 cut(s)	420
TspRI	CASTG	2 cut(s)	16, 459
Van91I	CCANNNNNTGG	1 cut(s)	191
XmiI	GTMKAC	1 cut(s)	566
XspI	CTAG	2 cut(s)	273, 570
Zsp2I	ATGCAT	2 cut(s)	321, 487

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.